메뉴 건너뛰기




Volumn 10, Issue 1, 2014, Pages

Zinc Finger Transcription Factors Displaced SREBP Proteins as the Major Sterol Regulators during Saccharomycotina Evolution

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; CANDIDA ALBICANS; DNA-BINDING PROTEINS; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; PROMOTER REGIONS, GENETIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; STEROL REGULATORY ELEMENT BINDING PROTEINS; STEROLS; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; YARROWIA; ZINC FINGERS;

EID: 84893791019     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004076     Document Type: Article
Times cited : (51)

References (95)
  • 1
    • 84866992765 scopus 로고    scopus 로고
    • Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification
    • Baker CR, Booth LN, Sorrells TR, Johnson AD, (2012) Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification. Cell 151: 80-95.
    • (2012) Cell , vol.151 , pp. 80-95
    • Baker, C.R.1    Booth, L.N.2    Sorrells, T.R.3    Johnson, A.D.4
  • 2
    • 18844374522 scopus 로고    scopus 로고
    • Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast
    • Tanay A, Regev A, Shamir R, (2005) Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast. Proc Natl Acad Sci U S A 102: 7203-7208.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 7203-7208
    • Tanay, A.1    Regev, A.2    Shamir, R.3
  • 3
    • 84885647005 scopus 로고    scopus 로고
    • Following gene duplication, paralog interference constrains transcriptional circuit evolution
    • Baker CR, Hanson-Smith V, Johnson AD, (2013) Following gene duplication, paralog interference constrains transcriptional circuit evolution. Science 342: 104-108.
    • (2013) Science , vol.342 , pp. 104-108
    • Baker, C.R.1    Hanson-Smith, V.2    Johnson, A.D.3
  • 4
    • 77958190479 scopus 로고    scopus 로고
    • Dramatic changes in transcription factor binding over evolutionary time
    • Weirauch MT, Hughes TR, (2010) Dramatic changes in transcription factor binding over evolutionary time. Genome Biol 11: 122.
    • (2010) Genome Biol , vol.11 , pp. 122
    • Weirauch, M.T.1    Hughes, T.R.2
  • 6
    • 33749173831 scopus 로고    scopus 로고
    • Evolution of alternative transcriptional circuits with identical logic
    • Tsong AE, Tuch BB, Li H, Johnson AD, (2006) Evolution of alternative transcriptional circuits with identical logic. Nature 443: 415-420.
    • (2006) Nature , vol.443 , pp. 415-420
    • Tsong, A.E.1    Tuch, B.B.2    Li, H.3    Johnson, A.D.4
  • 7
    • 34250204870 scopus 로고    scopus 로고
    • Transcriptional rewiring of fungal galactose-metabolism circuitry
    • Martchenko M, Levitin A, Hogues H, Nantel A, Whiteway M, (2007) Transcriptional rewiring of fungal galactose-metabolism circuitry. Curr Biol 17: 1007-1013.
    • (2007) Curr Biol , vol.17 , pp. 1007-1013
    • Martchenko, M.1    Levitin, A.2    Hogues, H.3    Nantel, A.4    Whiteway, M.5
  • 8
    • 40649126603 scopus 로고    scopus 로고
    • Transcription factor substitution during the evolution of fungal ribosome regulation
    • Hogues H, Lavoie H, Sellam A, Mangos M, Roemer T, et al. (2008) Transcription factor substitution during the evolution of fungal ribosome regulation. Mol Cell 29: 552-562.
    • (2008) Mol Cell , vol.29 , pp. 552-562
    • Hogues, H.1    Lavoie, H.2    Sellam, A.3    Mangos, M.4    Roemer, T.5
  • 9
    • 84868280094 scopus 로고    scopus 로고
    • A functional selection model explains evolutionary robustness despite plasticity in regulatory networks
    • Habib N, Wapinski I, Margalit H, Regev A, Friedman N, (2012) A functional selection model explains evolutionary robustness despite plasticity in regulatory networks. Mol Syst Biol 8: 619.
    • (2012) Mol Syst Biol , vol.8 , pp. 619
    • Habib, N.1    Wapinski, I.2    Margalit, H.3    Regev, A.4    Friedman, N.5
  • 10
    • 77649296829 scopus 로고    scopus 로고
    • Sterol regulatory element binding proteins in fungi: hypoxic transcription factors linked to pathogenesis
    • Bien CM, Espenshade PJ, (2010) Sterol regulatory element binding proteins in fungi: hypoxic transcription factors linked to pathogenesis. Eukaryot Cell 9: 352-359.
    • (2010) Eukaryot Cell , vol.9 , pp. 352-359
    • Bien, C.M.1    Espenshade, P.J.2
  • 11
    • 84884522638 scopus 로고    scopus 로고
    • Hypoxia and gene expression in eukaryotic microbes
    • Butler G, (2013) Hypoxia and gene expression in eukaryotic microbes. Ann Rev Microbiol 67: 291-312.
    • (2013) Ann Rev Microbiol , vol.67 , pp. 291-312
    • Butler, G.1
  • 12
    • 58349092088 scopus 로고    scopus 로고
    • Responses to hypoxia in fungal pathogens
    • Ernst JF, Tielker D, (2008) Responses to hypoxia in fungal pathogens. Cell Microbiol 11: 183-190.
    • (2008) Cell Microbiol , vol.11 , pp. 183-190
    • Ernst, J.F.1    Tielker, D.2
  • 13
    • 0036251153 scopus 로고    scopus 로고
    • SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver
    • Horton JD, Goldstein JL, Brown MS, (2002) SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver. J Clin Invest 109: 1125-1131.
    • (2002) J Clin Invest , vol.109 , pp. 1125-1131
    • Horton, J.D.1    Goldstein, J.L.2    Brown, M.S.3
  • 14
    • 0036671360 scopus 로고    scopus 로고
    • Cholesterol addition to ER membranes alters conformation of SCAP, the SREBP escort protein that regulates cholesterol metabolism
    • Brown AJ, Sun L, Feramisco JD, Brown MS, Goldstein JL, (2002) Cholesterol addition to ER membranes alters conformation of SCAP, the SREBP escort protein that regulates cholesterol metabolism. Mol Cell 10: 237-245.
    • (2002) Mol Cell , vol.10 , pp. 237-245
    • Brown, A.J.1    Sun, L.2    Feramisco, J.D.3    Brown, M.S.4    Goldstein, J.L.5
  • 15
    • 34249848111 scopus 로고    scopus 로고
    • Sterol-regulated transport of SREBPs from endoplasmic reticulum to Golgi: oxysterols block transport by binding to Insig
    • Radhakrishnan A, Ikeda Y, Kwon HJ, Brown MS, Goldstein JL, (2007) Sterol-regulated transport of SREBPs from endoplasmic reticulum to Golgi: oxysterols block transport by binding to Insig. Proc Natl Acad Sci U S A 104: 6511-6518.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 6511-6518
    • Radhakrishnan, A.1    Ikeda, Y.2    Kwon, H.J.3    Brown, M.S.4    Goldstein, J.L.5
  • 16
    • 39849102805 scopus 로고    scopus 로고
    • Regulation of sterol synthesis in eukaryotes
    • Espenshade PJ, Hughes AL, (2007) Regulation of sterol synthesis in eukaryotes. Annu Rev Genet 41: 401-427.
    • (2007) Annu Rev Genet , vol.41 , pp. 401-427
    • Espenshade, P.J.1    Hughes, A.L.2
  • 17
    • 56449097008 scopus 로고    scopus 로고
    • Insig regulates HMG-CoA reductase by controlling enzyme phosphorylation in fission yeast
    • Burg JS, Powell DW, Chai R, Hughes AL, Link AJ, et al. (2008) Insig regulates HMG-CoA reductase by controlling enzyme phosphorylation in fission yeast. Cell Metab 8: 522-531.
    • (2008) Cell Metab , vol.8 , pp. 522-531
    • Burg, J.S.1    Powell, D.W.2    Chai, R.3    Hughes, A.L.4    Link, A.J.5
  • 18
    • 72449173927 scopus 로고    scopus 로고
    • Conservation of the sterol regulatory element-binding protein pathway and its pathobiological importance in Cryptococcus neoformans
    • Chang YC, Ingavale SS, Bien C, Espenshade P, Kwon-Chung KJ, (2009) Conservation of the sterol regulatory element-binding protein pathway and its pathobiological importance in Cryptococcus neoformans. Eukaryot Cell 8: 1770-1779.
    • (2009) Eukaryot Cell , vol.8 , pp. 1770-1779
    • Chang, Y.C.1    Ingavale, S.S.2    Bien, C.3    Espenshade, P.4    Kwon-Chung, K.J.5
  • 19
    • 33847335459 scopus 로고    scopus 로고
    • A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans
    • Chun CD, Liu OW, Madhani HD, (2007) A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans. PLoS Pathog 3: e22.
    • (2007) PLoS Pathog , vol.3
    • Chun, C.D.1    Liu, O.W.2    Madhani, H.D.3
  • 20
    • 84855288996 scopus 로고    scopus 로고
    • Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase
    • Stewart EV, Lloyd SJ, Burg JS, Nwosu CC, Lintner RE, et al. (2012) Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase. J Biol Chem 287: 672-681.
    • (2012) J Biol Chem , vol.287 , pp. 672-681
    • Stewart, E.V.1    Lloyd, S.J.2    Burg, J.S.3    Nwosu, C.C.4    Lintner, R.E.5
  • 21
    • 79954525510 scopus 로고    scopus 로고
    • Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex
    • Stewart EV, Nwosu CC, Tong Z, Roguev A, Cummins TD, et al. (2011) Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Mol Cell 42: 160-171.
    • (2011) Mol Cell , vol.42 , pp. 160-171
    • Stewart, E.V.1    Nwosu, C.C.2    Tong, Z.3    Roguev, A.4    Cummins, T.D.5
  • 22
    • 84870421349 scopus 로고    scopus 로고
    • Dsc orthologs are required for hypoxia adaptation, triazole drug responses and fungal virulence in Aspergillus fumigatus
    • Willger SD, Cornish EJ, Chung D, Fleming BA, Lehmann MM, et al. (2012) Dsc orthologs are required for hypoxia adaptation, triazole drug responses and fungal virulence in Aspergillus fumigatus. Eukaryot Cell pp. 1557-1567.
    • (2012) Eukaryot Cell , pp. 1557-1567
    • Willger, S.D.1    Cornish, E.J.2    Chung, D.3    Fleming, B.A.4    Lehmann, M.M.5
  • 23
    • 44349091967 scopus 로고    scopus 로고
    • Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member
    • Hughes BT, Espenshade PJ, (2008) Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member. EMBO J 27: 1491-1501.
    • (2008) EMBO J , vol.27 , pp. 1491-1501
    • Hughes, B.T.1    Espenshade, P.J.2
  • 24
    • 58749108297 scopus 로고    scopus 로고
    • Oxygen-dependent binding of Nro1 to the prolyl hydroxylase Ofd1 regulates SREBP degradation in yeast
    • Lee CY, Stewart EV, Hughes BT, Espenshade PJ, (2009) Oxygen-dependent binding of Nro1 to the prolyl hydroxylase Ofd1 regulates SREBP degradation in yeast. EMBO J 28: 135-143.
    • (2009) EMBO J , vol.28 , pp. 135-143
    • Lee, C.Y.1    Stewart, E.V.2    Hughes, B.T.3    Espenshade, P.J.4
  • 25
    • 82455172129 scopus 로고    scopus 로고
    • Regulation of the Sre1 hypoxic transcription factor by oxygen-dependent control of DNA binding
    • Lee CY, Yeh TL, Hughes BT, Espenshade PJ, (2011) Regulation of the Sre1 hypoxic transcription factor by oxygen-dependent control of DNA binding. Mol Cell 44: 225-234.
    • (2011) Mol Cell , vol.44 , pp. 225-234
    • Lee, C.Y.1    Yeh, T.L.2    Hughes, B.T.3    Espenshade, P.J.4
  • 26
    • 0034811675 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factor Cph2 regulates hyphal development in Candida albicans partly via TEC1
    • Lane S, Zhou S, Pan T, Dai Q, Liu H, (2001) The basic helix-loop-helix transcription factor Cph2 regulates hyphal development in Candida albicans partly via TEC1. Mol Cell Biol 21: 6418-6428.
    • (2001) Mol Cell Biol , vol.21 , pp. 6418-6428
    • Lane, S.1    Zhou, S.2    Pan, T.3    Dai, Q.4    Liu, H.5
  • 27
    • 84055223912 scopus 로고    scopus 로고
    • Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis
    • Guida A, Lindstadt C, Maguire SL, Ding C, Higgins DG, et al. (2011) Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis. BMC Genomics 12: 628.
    • (2011) BMC Genomics , vol.12 , pp. 628
    • Guida, A.1    Lindstadt, C.2    Maguire, S.L.3    Ding, C.4    Higgins, D.G.5
  • 28
    • 53449091592 scopus 로고    scopus 로고
    • Candida albicans UPC2 is transcriptionally induced in response to antifungal drugs and anaerobicity through Upc2p-dependent and -independent mechanisms
    • Hoot SJ, Oliver BG, White TC, (2008) Candida albicans UPC2 is transcriptionally induced in response to antifungal drugs and anaerobicity through Upc2p-dependent and-independent mechanisms. Microbiology 154: 2748-2756.
    • (2008) Microbiology , vol.154 , pp. 2748-2756
    • Hoot, S.J.1    Oliver, B.G.2    White, T.C.3
  • 30
    • 0034810736 scopus 로고    scopus 로고
    • Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae
    • Vik A, Rine J, (2001) Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae. Mol Cell Biol 21: 6395-6405.
    • (2001) Mol Cell Biol , vol.21 , pp. 6395-6405
    • Vik, A.1    Rine, J.2
  • 31
    • 84876866643 scopus 로고    scopus 로고
    • Comparison of sterol import under aerobic and anaerobic conditions in three fungal species: Candida albicans, Candida glabrata and Saccharomyces cerevisiae
    • Zavrel M, Hoot SJ, White TC, (2013) Comparison of sterol import under aerobic and anaerobic conditions in three fungal species: Candida albicans, Candida glabrata and Saccharomyces cerevisiae. Eukaryot Cell 12: 725-38.
    • (2013) Eukaryot Cell , vol.12 , pp. 725-738
    • Zavrel, M.1    Hoot, S.J.2    White, T.C.3
  • 32
    • 0029045375 scopus 로고
    • The CUG codon is decoded in vivo as serine and not leucine in Candida albicans
    • Santos MA, Tuite MF, (1995) The CUG codon is decoded in vivo as serine and not leucine in Candida albicans. Nucleic Acids Res 23: 1481-1486.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1481-1486
    • Santos, M.A.1    Tuite, M.F.2
  • 33
    • 33845452848 scopus 로고    scopus 로고
    • A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
    • Fitzpatrick DA, Logue ME, Stajich JE, Butler G, (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol 6: 99.
    • (2006) BMC Evol Biol , vol.6 , pp. 99
    • Fitzpatrick, D.A.1    Logue, M.E.2    Stajich, J.E.3    Butler, G.4
  • 34
    • 84867632249 scopus 로고    scopus 로고
    • Yarrowia lipolytica
    • Nicaud JM, (2012) Yarrowia lipolytica. Yeast 29: 409-418.
    • (2012) Yeast , vol.29 , pp. 409-418
    • Nicaud, J.M.1
  • 35
    • 0032524465 scopus 로고    scopus 로고
    • Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution
    • Parraga A, Bellsolell L, Ferre-D'Amare AR, Burley SK, (1998) Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure 6: 661-672.
    • (1998) Structure , vol.6 , pp. 661-672
    • Parraga, A.1    Bellsolell, L.2    Ferre-D'Amare, A.R.3    Burley, S.K.4
  • 36
    • 0028963743 scopus 로고
    • Dual DNA binding specificity of ADD1/SREBP1 controlled by a single amino acid in the basic helix-loop-helix domain
    • Kim JB, Spotts GD, Halvorsen YD, Shih HM, Ellenberger T, et al. (1995) Dual DNA binding specificity of ADD1/SREBP1 controlled by a single amino acid in the basic helix-loop-helix domain. Mol Cell Biol 15: 2582-2588.
    • (1995) Mol Cell Biol , vol.15 , pp. 2582-2588
    • Kim, J.B.1    Spotts, G.D.2    Halvorsen, Y.D.3    Shih, H.M.4    Ellenberger, T.5
  • 37
    • 0028948313 scopus 로고
    • The GCR1 requirement for yeast glycolytic gene expression is suppressed by dominant mutations in the SGC1 gene, which encodes a novel basic-helix-loop-helix protein
    • Nishi K, Park CS, Pepper AE, Eichinger G, Innis MA, et al. (1995) The GCR1 requirement for yeast glycolytic gene expression is suppressed by dominant mutations in the SGC1 gene, which encodes a novel basic-helix-loop-helix protein. Mol Cell Biol 15: 2646-2653.
    • (1995) Mol Cell Biol , vol.15 , pp. 2646-2653
    • Nishi, K.1    Park, C.S.2    Pepper, A.E.3    Eichinger, G.4    Innis, M.A.5
  • 38
    • 0033434003 scopus 로고    scopus 로고
    • The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae
    • Sato T, Lopez MC, Sugioka S, Jigami Y, Baker HV, et al. (1999) The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae. FEBS Lett 463: 307-311.
    • (1999) FEBS Lett , vol.463 , pp. 307-311
    • Sato, T.1    Lopez, M.C.2    Sugioka, S.3    Jigami, Y.4    Baker, H.V.5
  • 39
    • 71549164363 scopus 로고    scopus 로고
    • Transcriptional regulation of carbohydrate metabolism in the human pathogen Candida albicans
    • Askew C, Sellam A, Epp E, Hogues H, Mullick A, et al. (2009) Transcriptional regulation of carbohydrate metabolism in the human pathogen Candida albicans. PLoS Pathog 5: e1000612.
    • (2009) PLoS Pathog , vol.5
    • Askew, C.1    Sellam, A.2    Epp, E.3    Hogues, H.4    Mullick, A.5
  • 40
    • 79955744051 scopus 로고    scopus 로고
    • Contribution of the glycolytic flux and hypoxia adaptation to efficient biofilm formation by Candida albicans
    • Bonhomme J, Chauvel M, Goyard S, Roux P, Rossignol T, et al. (2011) Contribution of the glycolytic flux and hypoxia adaptation to efficient biofilm formation by Candida albicans. Mol Microbiol 80: 995-1013.
    • (2011) Mol Microbiol , vol.80 , pp. 995-1013
    • Bonhomme, J.1    Chauvel, M.2    Goyard, S.3    Roux, P.4    Rossignol, T.5
  • 42
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe KH, Shields DC, (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 43
    • 17644401005 scopus 로고    scopus 로고
    • SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast
    • Hughes AL, Todd BL, Espenshade PJ, (2005) SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 120: 831-842.
    • (2005) Cell , vol.120 , pp. 831-842
    • Hughes, A.L.1    Todd, B.L.2    Espenshade, P.J.3
  • 45
    • 13844316993 scopus 로고    scopus 로고
    • Strains and strategies for large-scale gene deletion studies of the diploid human fungal pathogen Candida albicans
    • Noble SM, Johnson AD, (2005) Strains and strategies for large-scale gene deletion studies of the diploid human fungal pathogen Candida albicans. Eukaryot Cell 4: 298-309.
    • (2005) Eukaryot Cell , vol.4 , pp. 298-309
    • Noble, S.M.1    Johnson, A.D.2
  • 46
    • 0028287703 scopus 로고
    • Multiple-copy integration in the yeast Yarrowia lipolytica
    • Le Dall MT, Nicaud JM, Gaillardin C, (1994) Multiple-copy integration in the yeast Yarrowia lipolytica. Curr Genet 26: 38-44.
    • (1994) Curr Genet , vol.26 , pp. 38-44
    • Le Dall, M.T.1    Nicaud, J.M.2    Gaillardin, C.3
  • 47
    • 0037077236 scopus 로고    scopus 로고
    • New regulators of drug sensitivity in the family of yeast zinc cluster proteins
    • Akache B, Turcotte B, (2002) New regulators of drug sensitivity in the family of yeast zinc cluster proteins. J Biol Chem 277: 21254-21260.
    • (2002) J Biol Chem , vol.277 , pp. 21254-21260
    • Akache, B.1    Turcotte, B.2
  • 48
    • 18244396070 scopus 로고    scopus 로고
    • Candida albicans zinc cluster protein Upc2p confers resistance to antifungal drugs and is an activator of ergosterol biosynthetic genes
    • MacPherson S, Akache B, Weber S, De Deken X, Raymond M, et al. (2005) Candida albicans zinc cluster protein Upc2p confers resistance to antifungal drugs and is an activator of ergosterol biosynthetic genes. Antimicrob Agents Chemother 49: 1745-1752.
    • (2005) Antimicrob Agents Chemother , vol.49 , pp. 1745-1752
    • MacPherson, S.1    Akache, B.2    Weber, S.3    De Deken, X.4    Raymond, M.5
  • 49
    • 11144308844 scopus 로고    scopus 로고
    • Role of Candida albicans transcription factor Upc2p in drug resistance and sterol metabolism
    • Silver PM, Oliver BG, White TC, (2004) Role of Candida albicans transcription factor Upc2p in drug resistance and sterol metabolism. Eukaryot Cell 3: 1391-1397.
    • (2004) Eukaryot Cell , vol.3 , pp. 1391-1397
    • Silver, P.M.1    Oliver, B.G.2    White, T.C.3
  • 50
    • 57149083070 scopus 로고    scopus 로고
    • A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus
    • Willger SD, Puttikamonkul S, Kim KH, Burritt JB, Grahl N, et al. (2008) A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus. PLoS Pathog 4: e1000200.
    • (2008) PLoS Pathog , vol.4
    • Willger, S.D.1    Puttikamonkul, S.2    Kim, K.H.3    Burritt, J.B.4    Grahl, N.5
  • 51
    • 84855278233 scopus 로고    scopus 로고
    • SREBP coordinates iron and ergosterol homeostasis to mediate triazole drug and hypoxia responses in the human fungal pathogen Aspergillus fumigatus
    • Blatzer M, Barker BM, Willger SD, Beckmann N, Blosser SJ, et al. (2011) SREBP coordinates iron and ergosterol homeostasis to mediate triazole drug and hypoxia responses in the human fungal pathogen Aspergillus fumigatus. PLoS Genet 7: e1002374.
    • (2011) PLoS Genet , vol.7
    • Blatzer, M.1    Barker, B.M.2    Willger, S.D.3    Beckmann, N.4    Blosser, S.J.5
  • 52
    • 0030925208 scopus 로고    scopus 로고
    • Physiology and genetics of the dimorphic fungus Yarrowia lipolytica
    • Barth G, Gaillardin C, (1997) Physiology and genetics of the dimorphic fungus Yarrowia lipolytica. FEMS Microbiol Rev 19: 219-237.
    • (1997) FEMS Microbiol Rev , vol.19 , pp. 219-237
    • Barth, G.1    Gaillardin, C.2
  • 53
    • 3042521076 scopus 로고    scopus 로고
    • The distinct morphogenic states of Candida albicans
    • Sudbery P, Gow N, Berman J, (2004) The distinct morphogenic states of Candida albicans. Trends Microbiol 12: 317-324.
    • (2004) Trends Microbiol , vol.12 , pp. 317-324
    • Sudbery, P.1    Gow, N.2    Berman, J.3
  • 54
    • 17844362176 scopus 로고    scopus 로고
    • Ashbya gossypii: a model for fungal developmental biology
    • Wendland J, Walther A, (2005) Ashbya gossypii: a model for fungal developmental biology. Nat Rev Microbiol 3: 421-429.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 421-429
    • Wendland, J.1    Walther, A.2
  • 55
    • 84863784491 scopus 로고    scopus 로고
    • Identification of dimorphism-involved genes of Yarrowia lipolytica by means of microarray analysis
    • Morales-Vargas AT, Dominguez A, Ruiz-Herrera J, (2012) Identification of dimorphism-involved genes of Yarrowia lipolytica by means of microarray analysis. Res Microbiol 163: 378-387.
    • (2012) Res Microbiol , vol.163 , pp. 378-387
    • Morales-Vargas, A.T.1    Dominguez, A.2    Ruiz-Herrera, J.3
  • 56
    • 0035204542 scopus 로고    scopus 로고
    • Factors affecting the morphogenetic switch in Yarrowia lipolytica
    • Perez-Campo FM, Dominguez A, (2001) Factors affecting the morphogenetic switch in Yarrowia lipolytica. Curr Microbiol 43: 429-433.
    • (2001) Curr Microbiol , vol.43 , pp. 429-433
    • Perez-Campo, F.M.1    Dominguez, A.2
  • 57
    • 0036431538 scopus 로고    scopus 로고
    • Different effectors of dimorphism in Yarrowia lipolytica
    • Ruiz-Herrera J, Sentandreu R, (2002) Different effectors of dimorphism in Yarrowia lipolytica. Arch Microbiol 178: 477-483.
    • (2002) Arch Microbiol , vol.178 , pp. 477-483
    • Ruiz-Herrera, J.1    Sentandreu, R.2
  • 58
    • 1842337420 scopus 로고    scopus 로고
    • HOY1, a homeo gene required for hyphal formation in Yarrowia lipolytica
    • Torres-Guzman JC, Dominguez A, (1997) HOY1, a homeo gene required for hyphal formation in Yarrowia lipolytica. Mol Cell Biol 17: 6283-6293.
    • (1997) Mol Cell Biol , vol.17 , pp. 6283-6293
    • Torres-Guzman, J.C.1    Dominguez, A.2
  • 59
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 60
    • 33748852396 scopus 로고    scopus 로고
    • Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae
    • Lai LC, Kosorukoff AL, Burke PV, Kwast KE, (2006) Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae. Eukaryot Cell 5: 1468-1489.
    • (2006) Eukaryot Cell , vol.5 , pp. 1468-1489
    • Lai, L.C.1    Kosorukoff, A.L.2    Burke, P.V.3    Kwast, K.E.4
  • 61
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 62
    • 36148950640 scopus 로고    scopus 로고
    • Proteomic analysis reveals metabolic changes during yeast to hypha transition in Yarrowia lipolytica
    • Morin M, Monteoliva L, Insenser M, Gil C, Dominguez A, (2007) Proteomic analysis reveals metabolic changes during yeast to hypha transition in Yarrowia lipolytica. J Mass Spec 42: 1453-1462.
    • (2007) J Mass Spec , vol.42 , pp. 1453-1462
    • Morin, M.1    Monteoliva, L.2    Insenser, M.3    Gil, C.4    Dominguez, A.5
  • 63
    • 38749112941 scopus 로고    scopus 로고
    • Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast
    • Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, et al. (2008) Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell 19: 352-367.
    • (2008) Mol Biol Cell , vol.19 , pp. 352-367
    • Brauer, M.J.1    Huttenhower, C.2    Airoldi, E.M.3    Rosenstein, R.4    Matese, J.C.5
  • 65
    • 33645222762 scopus 로고    scopus 로고
    • Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast
    • Todd BL, Stewart EV, Burg JS, Hughes AL, Espenshade PJ, (2006) Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast. Mol Cell Biol 26: 2817-2831.
    • (2006) Mol Cell Biol , vol.26 , pp. 2817-2831
    • Todd, B.L.1    Stewart, E.V.2    Burg, J.S.3    Hughes, A.L.4    Espenshade, P.J.5
  • 67
    • 78650639493 scopus 로고    scopus 로고
    • Transcription factors CgUPC2A and CgUPC2B regulate ergosterol biosynthetic genes in Candida glabrata
    • Nagi M, Nakayama H, Tanabe K, Bard M, Aoyama T, et al. (2011) Transcription factors CgUPC2A and CgUPC2B regulate ergosterol biosynthetic genes in Candida glabrata. Genes Cells 16: 80-89.
    • (2011) Genes Cells , vol.16 , pp. 80-89
    • Nagi, M.1    Nakayama, H.2    Tanabe, K.3    Bard, M.4    Aoyama, T.5
  • 68
    • 47049100076 scopus 로고    scopus 로고
    • Genomewide location analysis of Candida albicans Upc2p, a regulator of sterol metabolism and azole drug resistance
    • Znaidi S, Weber S, Al-Abdin OZ, Bomme P, Saidane S, et al. (2008) Genomewide location analysis of Candida albicans Upc2p, a regulator of sterol metabolism and azole drug resistance. Eukaryot Cell 7: 836-847.
    • (2008) Eukaryot Cell , vol.7 , pp. 836-847
    • Znaidi, S.1    Weber, S.2    Al-Abdin, O.Z.3    Bomme, P.4    Saidane, S.5
  • 69
    • 0037031860 scopus 로고    scopus 로고
    • Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast
    • Wilcox LJ, Balderes DA, Wharton B, Tinkelenberg AH, Rao G, et al. (2002) Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast. J Biol Chem 277: 32466-32472.
    • (2002) J Biol Chem , vol.277 , pp. 32466-32472
    • Wilcox, L.J.1    Balderes, D.A.2    Wharton, B.3    Tinkelenberg, A.H.4    Rao, G.5
  • 70
    • 36448942928 scopus 로고    scopus 로고
    • The Candida glabrata putative sterol transporter gene CgAUS1 protects cells against azoles in the presence of serum
    • Nakayama H, Tanabe K, Bard M, Hodgson W, Wu S, et al. (2007) The Candida glabrata putative sterol transporter gene CgAUS1 protects cells against azoles in the presence of serum. The Journal of antimicrobial chemotherapy 60: 1264-1272.
    • (2007) The Journal of Antimicrobial Chemotherapy , vol.60 , pp. 1264-1272
    • Nakayama, H.1    Tanabe, K.2    Bard, M.3    Hodgson, W.4    Wu, S.5
  • 71
    • 78650886911 scopus 로고    scopus 로고
    • The role of ABC proteins Aus1p and Pdr11p in the uptake of external sterols in yeast: dehydroergosterol fluorescence study
    • Kohut P, Wustner D, Hronska L, Kuchler K, Hapala I, et al. (2011) The role of ABC proteins Aus1p and Pdr11p in the uptake of external sterols in yeast: dehydroergosterol fluorescence study. Biochem Biophys Res Commun 404: 233-238.
    • (2011) Biochem Biophys Res Commun , vol.404 , pp. 233-238
    • Kohut, P.1    Wustner, D.2    Hronska, L.3    Kuchler, K.4    Hapala, I.5
  • 72
    • 0028837586 scopus 로고
    • Isolation and characterization of the Saccharomyces cerevisiae SUT1 gene involved in sterol uptake
    • Bourot S, Karst F, (1995) Isolation and characterization of the Saccharomyces cerevisiae SUT1 gene involved in sterol uptake. Gene 165: 97-102.
    • (1995) Gene , vol.165 , pp. 97-102
    • Bourot, S.1    Karst, F.2
  • 73
    • 0036135461 scopus 로고    scopus 로고
    • Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response
    • Kwast KE, Lai LC, Menda N, James DT III, Aref S, et al. (2002) Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response. J Bacteriol 184: 250-265.
    • (2002) J Bacteriol , vol.184 , pp. 250-265
    • Kwast, K.E.1    Lai, L.C.2    Menda, N.3    James III, D.T.4    Aref, S.5
  • 74
    • 84856569061 scopus 로고    scopus 로고
    • Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter
    • Barker BM, Kroll K, Vodisch M, Mazurie A, Kniemeyer O, et al. (2012) Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter. BMC Genomics 13: 62.
    • (2012) BMC Genomics , vol.13 , pp. 62
    • Barker, B.M.1    Kroll, K.2    Vodisch, M.3    Mazurie, A.4    Kniemeyer, O.5
  • 75
    • 33645453927 scopus 로고    scopus 로고
    • Transcriptional response of the obligatory aerobe Trichoderma reesei to hypoxia and transient anoxia: implications for energy production and survival in the absence of oxygen
    • Bonaccorsi ED, Ferreira AJ, Chambergo FS, Ramos AS, Mantovani MC, et al. (2006) Transcriptional response of the obligatory aerobe Trichoderma reesei to hypoxia and transient anoxia: implications for energy production and survival in the absence of oxygen. Biochemistry (Mosc) 45: 3912-3924.
    • (2006) Biochemistry (Mosc) , vol.45 , pp. 3912-3924
    • Bonaccorsi, E.D.1    Ferreira, A.J.2    Chambergo, F.S.3    Ramos, A.S.4    Mantovani, M.C.5
  • 76
    • 0031762569 scopus 로고    scopus 로고
    • Regulators of pseudohyphal differentiation in Saccharomyces cerevisiae identified through multicopy suppressor analysis in ammonium permease mutant strains
    • Lorenz MC, Heitman J, (1998) Regulators of pseudohyphal differentiation in Saccharomyces cerevisiae identified through multicopy suppressor analysis in ammonium permease mutant strains. Genetics 150: 1443-1457.
    • (1998) Genetics , vol.150 , pp. 1443-1457
    • Lorenz, M.C.1    Heitman, J.2
  • 77
    • 0035204231 scopus 로고    scopus 로고
    • Transcriptional control of dimorphism in Candida albicans
    • Liu H, (2001) Transcriptional control of dimorphism in Candida albicans. Curr Opin Microbiol 4: 728-735.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 728-735
    • Liu, H.1
  • 78
    • 0035966045 scopus 로고    scopus 로고
    • DNA array studies demonstrate convergent regulation of virulence factors by Cph1, Cph2, and Efg1 in Candida albicans
    • Lane S, Birse C, Zhou S, Matson R, Liu H, (2001) DNA array studies demonstrate convergent regulation of virulence factors by Cph1, Cph2, and Efg1 in Candida albicans. J Biol Chem 276: 48988-48996.
    • (2001) J Biol Chem , vol.276 , pp. 48988-48996
    • Lane, S.1    Birse, C.2    Zhou, S.3    Matson, R.4    Liu, H.5
  • 79
    • 0035031144 scopus 로고    scopus 로고
    • Tagging morphogenetic genes by insertional mutagenesis in the yeast Yarrowia lipolytica
    • Richard M, Quijano RR, Bezzate S, Bordon-Pallier F, Gaillardin C, (2001) Tagging morphogenetic genes by insertional mutagenesis in the yeast Yarrowia lipolytica. J Bacteriol 183: 3098-3107.
    • (2001) J Bacteriol , vol.183 , pp. 3098-3107
    • Richard, M.1    Quijano, R.R.2    Bezzate, S.3    Bordon-Pallier, F.4    Gaillardin, C.5
  • 81
    • 34547883873 scopus 로고    scopus 로고
    • The regulatory subunit of protein kinase A promotes hyphal growth and plays an essential role in Yarrowia lipolytica
    • Cervantes-Chavez JA, Ruiz-Herrera J, (2007) The regulatory subunit of protein kinase A promotes hyphal growth and plays an essential role in Yarrowia lipolytica. FEMS Yeast Res 7: 929-940.
    • (2007) FEMS Yeast Res , vol.7 , pp. 929-940
    • Cervantes-Chavez, J.A.1    Ruiz-Herrera, J.2
  • 82
    • 33745910845 scopus 로고    scopus 로고
    • STE11 disruption reveals the central role of a MAPK pathway in dimorphism and mating in Yarrowia lipolytica
    • Cervantes-Chavez JA, Ruiz-Herrera J, (2006) STE11 disruption reveals the central role of a MAPK pathway in dimorphism and mating in Yarrowia lipolytica. FEMS Yeast Res 6: 801-815.
    • (2006) FEMS Yeast Res , vol.6 , pp. 801-815
    • Cervantes-Chavez, J.A.1    Ruiz-Herrera, J.2
  • 83
    • 84872416693 scopus 로고    scopus 로고
    • The TEA/ATTS transcription factor YlTec1p represses the yeast-to-hypha transition in the dimorphic yeast Yarrowia lipolytica
    • Zhao XF, Li M, Li YQ, Chen XD, Gao XD, (2013) The TEA/ATTS transcription factor YlTec1p represses the yeast-to-hypha transition in the dimorphic yeast Yarrowia lipolytica. FEMS Yeast Res 13: 50-61.
    • (2013) FEMS Yeast Res , vol.13 , pp. 50-61
    • Zhao, X.F.1    Li, M.2    Li, Y.Q.3    Chen, X.D.4    Gao, X.D.5
  • 85
    • 80052608871 scopus 로고    scopus 로고
    • Engineering polyhydroxyalkanoate content and monomer composition in the oleaginous yeast Yarrowia lipolytica by modifying the ss-oxidation multifunctional protein
    • Haddouche R, Poirier Y, Delessert S, Sabirova J, Pagot Y, et al. (2011) Engineering polyhydroxyalkanoate content and monomer composition in the oleaginous yeast Yarrowia lipolytica by modifying the ss-oxidation multifunctional protein. Appl Microbiol Biotechnol 91: 1327-1340.
    • (2011) Appl Microbiol Biotechnol , vol.91 , pp. 1327-1340
    • Haddouche, R.1    Poirier, Y.2    Delessert, S.3    Sabirova, J.4    Pagot, Y.5
  • 86
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 88
    • 84884701615 scopus 로고    scopus 로고
    • The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis
    • Connolly LA, Riccombeni A, Grozer Z, Holland LM, Lynch DB, et al. (2013) The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis. Mol Microbiol 90: 36-53.
    • (2013) Mol Microbiol , vol.90 , pp. 36-53
    • Connolly, L.A.1    Riccombeni, A.2    Grozer, Z.3    Holland, L.M.4    Lynch, D.B.5
  • 89
    • 57749121616 scopus 로고    scopus 로고
    • A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
    • Badis G, Chan ET, van Bakel H, Pena-Castillo L, Tillo D, et al. (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32: 878-887.
    • (2008) Mol Cell , vol.32 , pp. 878-887
    • Badis, G.1    Chan, E.T.2    van Bakel, H.3    Pena-Castillo, L.4    Tillo, D.5
  • 90
    • 75549083247 scopus 로고    scopus 로고
    • JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
    • Portales-Casamar E, Thongjuea S, Kwon AT, Arenillas D, Zhao X, et al. (2010) JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res 38: D105-110.
    • (2010) Nucleic Acids Res , vol.38
    • Portales-Casamar, E.1    Thongjuea, S.2    Kwon, A.T.3    Arenillas, D.4    Zhao, X.5
  • 91
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O, (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 92
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar RC, (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 94
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL, (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.