-
1
-
-
0342506826
-
Intracellular kinetics of a growing virus: A genetically structured simulations for the bacteriophage T7
-
doi:10.1002/(SICI)1097-0290(19970720)55:2〈375::AID-BIT15〉3.0. CO;2-G
-
Endy, D., Kong, D. & Yin, J. 1997 Intracellular kinetics of a growing virus: a genetically structured simulations for the bacteriophage T7. Biotechnol. Bioeng. 55, 375-389. (doi:10.1002/(SICI)1097-0290(19970720)55: 2〈375::AID-BIT15〉3.0.CO;2-G)
-
(1997)
Biotechnol. Bioeng.
, vol.55
, pp. 375-389
-
-
Endy, D.1
Kong, D.2
Yin, J.3
-
2
-
-
0036208888
-
Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico
-
doi:10.1128/JB.184.7.1888-1894.2002
-
You, L., Suthers, P. F. & Yin, J. 2002 Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico. J. Bacteriol. 184, 1888-1894. (doi:10.1128/JB.184.7.1888-1894.2002)
-
(2002)
J. Bacteriol.
, vol.184
, pp. 1888-1894
-
-
You, L.1
Suthers, P.F.2
Yin, J.3
-
3
-
-
0033034676
-
Quantitative intracellular kinetics of HIV type 1
-
doi:10.1089/088922299311457
-
Reddy, B. & Yin, J. 1999 Quantitative intracellular kinetics of HIV type 1. AIDS Res. Hum. Retrovirus 15, 273-283. (doi:10.1089/088922299311457)
-
(1999)
AIDS Res. Hum. Retrovirus
, vol.15
, pp. 273-283
-
-
Reddy, B.1
Yin, J.2
-
4
-
-
33846081516
-
Mathematical modeling of subgenomic hepatitis C virus replication in Huh-7 cells
-
doi:10.1128/JVI.01304-06
-
Dahari, H., Ribeiro, R. M., Rice, C. M. & Perelson, A. S. 2007 Mathematical modeling of subgenomic hepatitis C virus replication in Huh-7 cells. J. Virol. 81, 750-760. (doi:10.1128/JVI.01304-06)
-
(2007)
J. Virol.
, vol.81
, pp. 750-760
-
-
Dahari, H.1
Ribeiro, R.M.2
Rice, C.M.3
Perelson, A.S.4
-
5
-
-
6344270264
-
Structured model of influenza virus replication in MDCK cells
-
doi:10.1002/bit.20096
-
Sidorenko, Y. & Reichl, U. 2004 Structured model of influenza virus replication in MDCK cells. Biotech. Bioeng. 88, 1-14. (doi:10.1002/bit.20096)
-
(2004)
Biotech. Bioeng.
, vol.88
, pp. 1-14
-
-
Sidorenko, Y.1
Reichl, U.2
-
6
-
-
33749350509
-
Model-based design of growth-attenuated viruses
-
doi:10.1371/journal.pcbi.0020116
-
Lim, K., Lang, V., Tam, T. & Yin, J. 2006 Model-based design of growth-attenuated viruses. PLoS Comput. Biol. 2, e116. (doi:10.1371/journal. pcbi.0020116)
-
(2006)
PLoS Comput. Biol.
, vol.2
-
-
Lim, K.1
Lang, V.2
Tam, T.3
Yin, J.4
-
7
-
-
85050209693
-
The molecular quasispecies
-
doi:10.1002/9780470141243.ch4
-
Eigen, M., McCaskill, J. & Schuster, P. 1989 The molecular quasispecies. Adv. Chem. Phys. 75, 149-263. (doi:10.1002/9780470141243.ch4)
-
(1989)
Adv. Chem. Phys.
, vol.75
, pp. 149-263
-
-
Eigen, M.1
McCaskill, J.2
Schuster, P.3
-
8
-
-
0037235172
-
Levels of selection in positive-strand virus dynamics
-
doi:10.1046/j.1420-9101.2003.00481.x
-
Krakauer, D. & Komarova, N. 2003 Levels of selection in positive-strand virus dynamics. J. Evol. Biol. 16, 64-73. (doi:10.1046/j.1420- 9101.2003.00481.x)
-
(2003)
J. Evol. Biol.
, vol.16
, pp. 64-73
-
-
Krakauer, D.1
Komarova, N.2
-
9
-
-
0036400749
-
Stochastic vs. deterministic modeling of intracellular viral kinetics
-
doi:10.1006/jtbi.2002.3078
-
Srivastava, R., You, L., Summers, J. & Yin, J. 2002 Stochastic vs. deterministic modeling of intracellular viral kinetics. J. Theor. Biol. 218, 309-321. (doi:10.1006/jtbi.2002.3078)
-
(2002)
J. Theor. Biol.
, vol.218
, pp. 309-321
-
-
Srivastava, R.1
You, L.2
Summers, J.3
Yin, J.4
-
10
-
-
1142277236
-
Bifurcation in a generic model of intracellular viral kinetics
-
doi:10.1088/0305-4470/37/5/L03
-
Zhdanov, V. P. 2004 Bifurcation in a generic model of intracellular viral kinetics. J. Phys. A Math. Gen. 37, L63-L66. (doi:10.1088/0305-4470/37/5/L03)
-
(2004)
J. Phys. A Math. Gen.
, vol.37
-
-
Zhdanov, V.P.1
-
11
-
-
0017806301
-
Nucleotide sequence heterogeneity of an RNA phage population
-
doi:10.1016/0092-8674(78)90223-4
-
Domingo, E., Sabo, D., Taniguchi, T. & Weissmann, C. 1978 Nucleotide sequence heterogeneity of an RNA phage population. Cell 13, 735-744. (doi:10.1016/0092-8674(78)90223-4)
-
(1978)
Cell
, vol.13
, pp. 735-744
-
-
Domingo, E.1
Sabo, D.2
Taniguchi, T.3
Weissmann, C.4
-
13
-
-
0002130413
-
Mutation rates and rapid evolution of RNA viruses
-
(ed. S. Morse) New York, NY: Raven Press
-
Domingo, E. & Holland, J. J. (eds) 1994 Mutation rates and rapid evolution of RNA viruses. In The evolutionary biology of RNA viruses (ed. S. Morse), pp. 161-183. New York, NY: Raven Press.
-
(1994)
The Evolutionary Biology of RNA Viruses
, pp. 161-183
-
-
Domingo, E.1
Holland, J.J.2
-
14
-
-
77956826336
-
Viral mutation rates
-
doi:10.1128/JVI.00694-10
-
Sanjuán, R., Nebot, M. R., Chirico, N., Mansky, L. M. & Belshaw, R. 2010 Viral mutation rates. J. Virol. 84, 9733-9748. (doi:10.1128/JVI.00694-10)
-
(2010)
J. Virol.
, vol.84
, pp. 9733-9748
-
-
Sanjuán, R.1
Nebot, M.R.2
Chirico, N.3
Mansky, L.M.4
Belshaw, R.5
-
15
-
-
33645910535
-
Viral evolution
-
doi:10.1016/j.plrev.2005.11.002
-
Manrubia, S. C. & Lázaro, E. 2006 Viral evolution. Phys. Live Rev. 3, 65-91. (doi:10.1016/j.plrev.2005.11.002)
-
(2006)
Phys. Live Rev.
, vol.3
, pp. 65-91
-
-
Manrubia, S.C.1
Lázaro, E.2
-
16
-
-
70450172874
-
Replication mode and landscape topology differentially affect RNA virus mutational load and robustness
-
doi:10.1128/JVI.00767-09
-
Sardanyés, J., Solé, R. V. & Elena, S. F. 2009 Replication mode and landscape topology differentially affect RNA virus mutational load and robustness. J. Virol. 83, 12 579-12 589. (doi:10.1128/JVI.00767-09)
-
(2009)
J. Virol.
, vol.83
, pp. 12579-12589
-
-
Sardanyés, J.1
Solé, R.V.2
Elena, S.F.3
-
17
-
-
77649199866
-
The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses
-
doi:10.1098/rspb.2009.1247
-
Thébaud, G., Chadouef, J., Morelli, M. J., McCauley, J. W. & Haydon, D. T. 2010 The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proc. R. Soc. B 277, 809-817. (doi:10.1098/rspb.2009.1247)
-
(2010)
Proc. R. Soc. B
, vol.277
, pp. 809-817
-
-
Thébaud, G.1
Chadouef, J.2
Morelli, M.J.3
McCauley, J.W.4
Haydon, D.T.5
-
18
-
-
79960130276
-
Dynamics of a plant RNA virus intracellular accumulation: Stamping machine versus geometric replication
-
doi:10.1534/genetics.111.129114
-
Martínez, F., Sardanyés, J., Elena, S. F. & Daròs, J. A. 2011 Dynamics of a plant RNA virus intracellular accumulation: stamping machine versus geometric replication. Genetics 188, 637-646. (doi:10.1534/genetics.111.129114)
-
(2011)
Genetics
, vol.188
, pp. 637-646
-
-
Martínez, F.1
Sardanyés, J.2
Elena, S.F.3
Daròs, J.A.4
-
19
-
-
0013953238
-
An analysis of the clone size distribution of φX174 mutants and recombinants
-
doi:10.1016/S0042-6822(66) 81004-8
-
Denhardt, D. & Silver, R. B. 1966 An analysis of the clone size distribution of φX174 mutants and recombinants. Virology 30, 10-19. (doi:10.1016/S0042-6822(66) 81004-8)
-
(1966)
Virology
, vol.30
, pp. 10-19
-
-
Denhardt, D.1
Silver, R.B.2
-
20
-
-
76949126150
-
The frequency distribution of spontaneous bacteriophage mutants as evidence for the exponential rate of phage production
-
Luria, S. E. 1951 The frequency distribution of spontaneous bacteriophage mutants as evidence for the exponential rate of phage production. Cold Spring Harbor Symp. Quant. Biol. 16, 463-470.
-
(1951)
Cold Spring Harbor Symp. Quant. Biol.
, vol.16
, pp. 463-470
-
-
Luria, S.E.1
-
21
-
-
0036118218
-
Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage F6
-
doi:10.1128/JVI.76.7.3276-3281.2002
-
Chao, L., Rang, C. U. & Wong, L. E. 2002 Distribution of spontaneous mutants and inferences about the replication mode of the RNA bacteriophage F6. J. Virol. 76, 3276-3281. (doi:10.1128/JVI.76.7.3276-3281.2002)
-
(2002)
J. Virol.
, vol.76
, pp. 3276-3281
-
-
Chao, L.1
Rang, C.U.2
Wong, L.E.3
-
24
-
-
33645800999
-
Mechanisms of genetic robustness in RNA viruses
-
doi:10.1038/sj.embor.7400636
-
Elena, S. F., Carrasco, P., Daròs, J. A. & Sanjuán, R. 2006 Mechanisms of genetic robustness in RNA viruses. EMBO Rep. 7, 168-173. (doi:10.1038/sj.embor.7400636)
-
(2006)
EMBO Rep.
, vol.7
, pp. 168-173
-
-
Elena, S.F.1
Carrasco, P.2
Daròs, J.A.3
Sanjuán, R.4
-
25
-
-
0034979415
-
Mutants of tobacco mosaic virus with temperature-sensitive coat proteins induces heat shock response in tobacco leaves
-
doi:10.1094/MPMI.2001.14.7.914
-
Jockusch, H., Wiegand, C., Mersch, B. & Rajes, D. 2001 Mutants of tobacco mosaic virus with temperature-sensitive coat proteins induces heat shock response in tobacco leaves. Mol. Plant Microbe Interact. 14, 914-917. (doi:10.1094/MPMI.2001.14.7.914)
-
(2001)
Mol. Plant Microbe Interact.
, vol.14
, pp. 914-917
-
-
Jockusch, H.1
Wiegand, C.2
Mersch, B.3
Rajes, D.4
-
26
-
-
0000829918
-
Error thresholds for molecular quasispecies as phase transitions: From simple landscapes to spinglass models
-
doi:10.1103/PhysRevA.45.6038
-
Tarazona, P. 1992 Error thresholds for molecular quasispecies as phase transitions: from simple landscapes to spinglass models. Phys. Rev. A 45, 6038-6049. (doi:10.1103/PhysRevA.45.6038)
-
(1992)
Phys. Rev. A
, vol.45
, pp. 6038-6049
-
-
Tarazona, P.1
-
27
-
-
65549128054
-
Phase diagram for the eigen quasispecies theory with a truncated fitness landscape
-
doi:10.1103/PhysRevE.79.041905
-
Saakian, D. B., Biebricher, C. K. & Hu, C.-K. 2009 Phase diagram for the eigen quasispecies theory with a truncated fitness landscape. Phys. Rev. E 79, 041905. (doi:10.1103/PhysRevE.79.041905)
-
(2009)
Phys. Rev. E
, vol.79
, pp. 041905
-
-
Saakian, D.B.1
Biebricher, C.K.2
Hu, C.-K.3
-
28
-
-
77954623766
-
Error threshold in RNA quasispecies models with complementation
-
doi:10.1016/j.jtbi.2010.05.018
-
Sardanyés, J. & Elena, S. F. 2010 Error threshold in RNA quasispecies models with complementation. J. Theor. Biol. 265, 278-286. (doi:10.1016/j.jtbi.2010.05.018)
-
(2010)
J. Theor. Biol.
, vol.265
, pp. 278-286
-
-
Sardanyés, J.1
Elena, S.F.2
-
29
-
-
78650847135
-
Optimal viral strategies for bypassing RNA silencing
-
doi:10.1098/rsif.2010.0264
-
Rodrigo, G., Carrera, J., Jaramillo, A. & Elena, S. F. 2011 Optimal viral strategies for bypassing RNA silencing. J.R. Soc. Interface 8, 257-268. (doi:10.1098/rsif.2010.0264)
-
(2011)
J.R. Soc. Interface
, vol.8
, pp. 257-268
-
-
Rodrigo, G.1
Carrera, J.2
Jaramillo, A.3
Elena, S.F.4
|