메뉴 건너뛰기




Volumn 81, Issue 23, 2007, Pages 12979-12984

Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; VIRUS RNA;

EID: 36348963100     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.00524-07     Document Type: Article
Times cited : (158)

References (46)
  • 1
    • 0032377357 scopus 로고    scopus 로고
    • Approximate is better than "exact" for interval estimation of binomial proportions
    • Agresti, A., and B. A. Coull. 1998. Approximate is better than "exact" for interval estimation of binomial proportions. Am. Stat. 52:119-126.
    • (1998) Am. Stat , vol.52 , pp. 119-126
    • Agresti, A.1    Coull, B.A.2
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57:289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 33646901855 scopus 로고    scopus 로고
    • Crossing the line: Selection and evolution of virulence traits
    • Brown, N. F., M. E. Wickham, B. K. Coombes, and B. B. Finaly. 2006. Crossing the line: selection and evolution of virulence traits. PLoS Pathog. 2:e42.
    • (2006) PLoS Pathog , vol.2
    • Brown, N.F.1    Wickham, M.E.2    Coombes, B.K.3    Finaly, B.B.4
  • 5
    • 3142755598 scopus 로고    scopus 로고
    • Epistasis and its relationship to canalization in the RNA virus φ6
    • Burch, C. L., and L. Chao. 2004. Epistasis and its relationship to canalization in the RNA virus φ6. Genetics 167:559-567.
    • (2004) Genetics , vol.167 , pp. 559-567
    • Burch, C.L.1    Chao, L.2
  • 6
    • 0025244957 scopus 로고
    • Fitness of RNA virus decreased by Muller's ratchet
    • Chao, L. 1990. Fitness of RNA virus decreased by Muller's ratchet. Nature 348:454-455.
    • (1990) Nature , vol.348 , pp. 454-455
    • Chao, L.1
  • 7
    • 33846092128 scopus 로고    scopus 로고
    • A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments
    • Carrasco, P., J. A. Daròs, P. Agudelo-Romero, and S. F. Elena. 2007. A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments. J. Virol. Methods 139:181-188.
    • (2007) J. Virol. Methods , vol.139 , pp. 181-188
    • Carrasco, P.1    Daròs, J.A.2    Agudelo-Romero, P.3    Elena, S.F.4
  • 8
    • 0027509085 scopus 로고
    • Genetic bottleneck and population passages cause profound fitness differences in RNA viruses
    • Clarke, D. K., E. A. Duarte, A. Moya, S. F. Elena, E. Domingo, and J. J. Holland. 1993. Genetic bottleneck and population passages cause profound fitness differences in RNA viruses. J. Virol. 67:222-228.
    • (1993) J. Virol , vol.67 , pp. 222-228
    • Clarke, D.K.1    Duarte, E.A.2    Moya, A.3    Elena, S.F.4    Domingo, E.5    Holland, J.J.6
  • 9
    • 0036811120 scopus 로고    scopus 로고
    • Molecular basis of adaptive convergence in experimental populations of RNA viruses
    • Cuevas, J. M., S. F. Elena, and A. Moya. 2002. Molecular basis of adaptive convergence in experimental populations of RNA viruses. Genetics 162:533-542.
    • (2002) Genetics , vol.162 , pp. 533-542
    • Cuevas, J.M.1    Elena, S.F.2    Moya, A.3
  • 10
    • 34248359479 scopus 로고    scopus 로고
    • Fitness declines in Tobacco etch virus upon serial bottleneck passages
    • de la Iglesia. F., and S. F. Elena. 2007. Fitness declines in Tobacco etch virus upon serial bottleneck passages. J. Virol. 81:4941-4947.
    • (2007) J. Virol , vol.81 , pp. 4941-4947
    • de la Iglesia, F.1    Elena, S.F.2
  • 11
    • 0026448774 scopus 로고
    • Tagging of plant potyvirus replication and movement by insertion of beta-glucuronidase into the viral polyprotein
    • Dolja, V. V., H. J. McBride, and J. C. Carrington. 1992. Tagging of plant potyvirus replication and movement by insertion of beta-glucuronidase into the viral polyprotein. Proc. Natl. Acad. Sci. USA 89:10208-10212.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10208-10212
    • Dolja, V.V.1    McBride, H.J.2    Carrington, J.C.3
  • 12
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo, E., and J. J. Holland. 1997. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51:151-178.
    • (1997) Annu. Rev. Microbiol , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 13
    • 0034630910 scopus 로고    scopus 로고
    • Viruses at the edge of adaptation
    • Domingo, E. 2000. Viruses at the edge of adaptation. Virology 270:251-253.
    • (2000) Virology , vol.270 , pp. 251-253
    • Domingo, E.1
  • 16
    • 0032553467 scopus 로고    scopus 로고
    • Experimental evolution of parasites
    • Ebert, D. 1998. Experimental evolution of parasites. Science 282:1432-1435.
    • (1998) Science , vol.282 , pp. 1432-1435
    • Ebert, D.1
  • 17
    • 33645800999 scopus 로고    scopus 로고
    • Mechanisms of genetic robustness in RNA viruses
    • Elena, S. F., P. Carrasco, J. A. Daròs, and R. Sanjuán. 2006. Mechanisms of genetic robustness in RNA viruses. EMBO Rep. 7:168-173.
    • (2006) EMBO Rep , vol.7 , pp. 168-173
    • Elena, S.F.1    Carrasco, P.2    Daròs, J.A.3    Sanjuán, R.4
  • 18
    • 0032748221 scopus 로고    scopus 로고
    • Rate of deleterious mutation and the distribution of its effects on fitness in Vesicular stomatitis virus
    • Elena, S. F., and A. Moya. 1999. Rate of deleterious mutation and the distribution of its effects on fitness in Vesicular stomatitis virus. J. Evol. Biol. 12:1078-1088.
    • (1999) J. Evol. Biol , vol.12 , pp. 1078-1088
    • Elena, S.F.1    Moya, A.2
  • 19
    • 0004924695 scopus 로고
    • Infectivity titration with bacterial plant pathogens
    • Ercolani, G. L. 1984. Infectivity titration with bacterial plant pathogens. Annu. Rev. Phytopathol. 22:35-52.
    • (1984) Annu. Rev. Phytopathol , vol.22 , pp. 35-52
    • Ercolani, G.L.1
  • 20
    • 0034096064 scopus 로고    scopus 로고
    • Evolution of virulence in natural populations of the satellite RNA of Cucumber mosaic virus
    • Escriu, F., A. Fraile, and F. García-Arenal. 2000. Evolution of virulence in natural populations of the satellite RNA of Cucumber mosaic virus. Phytopathology 90:480-485.
    • (2000) Phytopathology , vol.90 , pp. 480-485
    • Escriu, F.1    Fraile, A.2    García-Arenal, F.3
  • 21
    • 0038613092 scopus 로고    scopus 로고
    • The evolution of virulence in a plant virus
    • Escriu, F., A. Fraile, and F. García-Arenal. 2003. The evolution of virulence in a plant virus. Evolution 57:755-765.
    • (2003) Evolution , vol.57 , pp. 755-765
    • Escriu, F.1    Fraile, A.2    García-Arenal, F.3
  • 22
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • Eyre-Walker, A., and P. D. Keightley. 2007. The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8:610-618.
    • (2007) Nat. Rev. Genet , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 23
    • 22544478419 scopus 로고    scopus 로고
    • The cost of replication fidelity in an RNA virus
    • Furió, V., A. Moya, and R. Sanjuán. 2005. The cost of replication fidelity in an RNA virus. Proc. Natl. Acad. Sci. USA 102:10233-10237.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 10233-10237
    • Furió, V.1    Moya, A.2    Sanjuán, R.3
  • 24
    • 11244303615 scopus 로고    scopus 로고
    • Fitness costs of mutations affecting the systemic acquired resistance pathway in Arabidopsis thaliana
    • Heidel, A. J., J. D. Clarke, J. Antonovics, and X. Dong. 2004. Fitness costs of mutations affecting the systemic acquired resistance pathway in Arabidopsis thaliana. Genetics 168:2197-2206.
    • (2004) Genetics , vol.168 , pp. 2197-2206
    • Heidel, A.J.1    Clarke, J.D.2    Antonovics, J.3    Dong, X.4
  • 25
    • 0035084187 scopus 로고    scopus 로고
    • The ecological concept of costs of induced systemic resistance (ISR)
    • Heil, M. 2001. The ecological concept of costs of induced systemic resistance (ISR). Eur. J. Plant Pathol. 107:137-146.
    • (2001) Eur. J. Plant Pathol , vol.107 , pp. 137-146
    • Heil, M.1
  • 26
    • 34247623284 scopus 로고    scopus 로고
    • Molecular basis for a lack of correlation between viral fitness and cell killing capacity
    • Herrera, M., J. García-Arriaza, N. Pariente, C. Escarmís, and E. Domingo. 2007. Molecular basis for a lack of correlation between viral fitness and cell killing capacity. PLoS Pathog. 3:e53.
    • (2007) PLoS Pathog , vol.3
    • Herrera, M.1    García-Arriaza, J.2    Pariente, N.3    Escarmís, C.4    Domingo, E.5
  • 27
    • 1242296549 scopus 로고    scopus 로고
    • Model selection in ecology and evolution
    • Johnson, J. B., and K. S. Omland. 2004. Model selection in ecology and evolution. Trends Ecol. Evol. 19:101-108.
    • (2004) Trends Ecol. Evol , vol.19 , pp. 101-108
    • Johnson, J.B.1    Omland, K.S.2
  • 28
    • 36349015490 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 29
    • 0037022396 scopus 로고    scopus 로고
    • Redundancy, antiredundancy, and the robustness of genomes
    • Krakauer, D. C., and J. B. Plotkin. 2002. Redundancy, antiredundancy, and the robustness of genomes. Proc. Natl. Acad. Sci. USA 99:1405-1409.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1405-1409
    • Krakauer, D.C.1    Plotkin, J.B.2
  • 30
    • 0141633021 scopus 로고    scopus 로고
    • Resistance of virus to extinction on bottleneck passages: Study of a decaying and fluctuating pattern of fitness loss
    • Lázaro, E., C. Escarmís, J. Pérez-Mercader, S. C. Manrubia, and E. Domingo. 2003. Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss. Proc. Natl. Acad. Sci. USA 100:10830-10835.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10830-10835
    • Lázaro, E.1    Escarmís, C.2    Pérez-Mercader, J.3    Manrubia, S.C.4    Domingo, E.5
  • 31
    • 0028162164 scopus 로고
    • The evolution of virulence in parasites and pathogens: Reconciliation between two competing hypothesis
    • Lenski, R. E., and R. M. May. 1994. The evolution of virulence in parasites and pathogens: reconciliation between two competing hypothesis. J. Theor. Biol. 169:253-265.
    • (1994) J. Theor. Biol , vol.169 , pp. 253-265
    • Lenski, R.E.1    May, R.M.2
  • 32
    • 0030115420 scopus 로고    scopus 로고
    • The evolution and maintenance of virulence in micropa'asites
    • Levin, B. R. 1996. The evolution and maintenance of virulence in micropa'asites. Emerg. Infect. Dis. 2:93-102.
    • (1996) Emerg. Infect. Dis , vol.2 , pp. 93-102
    • Levin, B.R.1
  • 33
    • 0025682946 scopus 로고
    • Mutation load and the survival of small populations
    • Lynch, M., and W. Gabriel. 1990. Mutation load and the survival of small populations. Evolution 44:1725-1737.
    • (1990) Evolution , vol.44 , pp. 1725-1737
    • Lynch, M.1    Gabriel, W.2
  • 35
    • 0001475812 scopus 로고    scopus 로고
    • The hypersensitive response and the induction of cell death in plants
    • Morel, J. B., and J. L. Dangl. 1997. The hypersensitive response and the induction of cell death in plants. Cell Death Differ. 4:671-683.
    • (1997) Cell Death Differ , vol.4 , pp. 671-683
    • Morel, J.B.1    Dangl, J.L.2
  • 36
    • 36349028148 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 37
    • 0033515583 scopus 로고    scopus 로고
    • Lack of evolutionary stasis during alternating replication of an arbovirus in insect and mammalian cells
    • Novella, I. S., C. L. Hershey, C. Escarmis, E. Domingo, and J. J. Holland. 1999. Lack of evolutionary stasis during alternating replication of an arbovirus in insect and mammalian cells. J. Mol. Biol. 287:459-465.
    • (1999) J. Mol. Biol , vol.287 , pp. 459-465
    • Novella, I.S.1    Hershey, C.L.2    Escarmis, C.3    Domingo, E.4    Holland, J.J.5
  • 38
    • 4444358447 scopus 로고    scopus 로고
    • Molecular basis of fitness loss and fitness recovery in Vesicular stomatitis virus
    • Novella, I. S., and B. E. Ebendick-Corpus. 2004. Molecular basis of fitness loss and fitness recovery in Vesicular stomatitis virus. J. Mol. Biol. 342:1423-1430.
    • (2004) J. Mol. Biol , vol.342 , pp. 1423-1430
    • Novella, I.S.1    Ebendick-Corpus, B.E.2
  • 39
    • 36348989106 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 40
    • 33847649474 scopus 로고    scopus 로고
    • Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution
    • Pybus, O. G., A. Rambaut, R. Belshaw, R. P. Freckleton, A. J. Drummond, and E. C. Holmes. 2007. Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol. Biol. Evol. 24:845-852.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 845-852
    • Pybus, O.G.1    Rambaut, A.2    Belshaw, R.3    Freckleton, R.P.4    Drummond, A.J.5    Holmes, E.C.6
  • 41
    • 33744822973 scopus 로고    scopus 로고
    • Quantifying antagonistic epistasis in a multifunctional RNA secondary structure of the Rous sarcoma virus
    • Sanjuán, R. 2006. Quantifying antagonistic epistasis in a multifunctional RNA secondary structure of the Rous sarcoma virus. J. Gen. Virol. 87:1595-1602.
    • (2006) J. Gen. Virol , vol.87 , pp. 1595-1602
    • Sanjuán, R.1
  • 42
    • 33749574518 scopus 로고    scopus 로고
    • In silico predicted robustness of viroid RNA secondary structures. II. Interactions between mutation pairs
    • Sanjuán, R., J. Forment, and S. F. Elena. 2006. In silico predicted robustness of viroid RNA secondary structures. II. Interactions between mutation pairs. Mol. Biol. Evol. 23:2123-2130.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 2123-2130
    • Sanjuán, R.1    Forment, J.2    Elena, S.F.3
  • 43
    • 2942565781 scopus 로고    scopus 로고
    • The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
    • Sanjuán, R., A. Moya, and S. F. Elena. 2004. The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl. Acad. Sci. USA 101:8396-8401.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 8396-8401
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 44
    • 7444221704 scopus 로고    scopus 로고
    • The contribution of epistasis to the architecture of fitness in an RNA virus
    • Sanjuán, R., A. Moya, and S. F. Elena. 2004. The contribution of epistasis to the architecture of fitness in an RNA virus. Proc. Natl. Acad. Sci. USA 101:15376-15379.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 15376-15379
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 45
    • 17844405607 scopus 로고    scopus 로고
    • An empirical study of the evolution of virulence under both horizontal and vertical transmission
    • Stewart, A. D., J. M. Logsdon, Jr., and S. E. Kelly. 2005. An empirical study of the evolution of virulence under both horizontal and vertical transmission. Evolution 59:730-739.
    • (2005) Evolution , vol.59 , pp. 730-739
    • Stewart, A.D.1    Logsdon Jr., J.M.2    Kelly, S.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.