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Volumn 2013, Issue , 2013, Pages

Close encounters of the third domain: The emerging genomic view of archaeal diversity and evolution

Author keywords

[No Author keywords available]

Indexed keywords

METHANE; RNA 16S;

EID: 84890062467     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2013/202358     Document Type: Review
Times cited : (24)

References (136)
  • 2
    • 84890013646 scopus 로고    scopus 로고
    • The birth of the Archaea: A personal retrospective
    • Blackwell Publishing
    • Woese C. R., Garrett R. A., Klenk H.-P., The birth of the Archaea: a personal retrospective. Archaea 2007 Blackwell Publishing
    • (2007) Archaea
    • Woese, C.R.1    Garrett, R.A.2    Klenk, H.-P.3
  • 4
    • 0016164906 scopus 로고
    • Long chain glycerol diether and polyol dialkyl glycerol triether lipids of Sulfolobus acidocaldarius
    • 2-s2.0-0016164906
    • Langworthy T. A., Mayberry W. R., Smith P. F., Long chain glycerol diether and polyol dialkyl glycerol triether lipids of Sulfolobus acidocaldarius. Journal of Bacteriology 1974 119 1 106 116 2-s2.0-0016164906
    • (1974) Journal of Bacteriology , vol.119 , Issue.1 , pp. 106-116
    • Langworthy, T.A.1    Mayberry, W.R.2    Smith, P.F.3
  • 5
    • 0017388070 scopus 로고
    • Lack of peptidoglycan in the cell walls of Methanosarcina barkeri
    • Kandler O., Hippe H., Lack of peptidoglycan in the cell walls of Methanosarcina barkeri. Archives of Microbiology 1977 113 1-2 57 60 2-s2.0-0017388070 (Pubitemid 8097082)
    • (1977) Archives of Microbiology , vol.113 , Issue.1-2 , pp. 57-60
    • Kandler, O.1    Hippe, H.2
  • 6
    • 0018255559 scopus 로고
    • DNA-dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius
    • 2-s2.0-0018255559
    • Zillig W., Stetter K. O., Janekovic D., DNA-dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius. European Journal of Biochemistry 1979 96 3 597 604 2-s2.0-0018255559
    • (1979) European Journal of Biochemistry , vol.96 , Issue.3 , pp. 597-604
    • Zillig, W.1    Stetter, K.O.2    Janekovic, D.3
  • 7
    • 0021092718 scopus 로고
    • Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type
    • 2-s2.0-0021092718
    • Huet J., Schnabel R., Sentenac A., Zillig W., Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type. EMBO Journal 1983 2 8 1291 1294 2-s2.0-0021092718
    • (1983) EMBO Journal , vol.2 , Issue.8 , pp. 1291-1294
    • Huet, J.1    Schnabel, R.2    Sentenac, A.3    Zillig, W.4
  • 8
    • 0021000129 scopus 로고
    • Ribosome evolution: The structural bases of protein synthesis in archaebacteria, eubacteria, and eukaryotes
    • 2-s2.0-0021000129 10.1016/S0079-6603(08)60686-8
    • Lake J. A., Ribosome evolution: the structural bases of protein synthesis in archaebacteria, eubacteria, and eukaryotes. Progress in Nucleic Acid Research and Molecular Biology 1983 30 163 194 2-s2.0-0021000129 10.1016/S0079-6603(08)60686-8
    • (1983) Progress in Nucleic Acid Research and Molecular Biology , vol.30 , pp. 163-194
    • Lake, J.A.1
  • 9
    • 0021229429 scopus 로고
    • A new ribosome structure
    • Henderson E., Oakes M., Clark M. W., Lake J. A., Matheson A. T., Zillig W., A new ribosome structure. Science 1984 225 4661 510 512 2-s2.0-0021229429 (Pubitemid 14055117)
    • (1984) Science , vol.225 , Issue.4661 , pp. 510-512
    • Henderson, E.1    Oakes, M.2    Clark, M.W.3
  • 12
    • 0025301592 scopus 로고
    • HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones
    • DOI 10.1073/pnas.87.15.5788
    • Sandman K., Krzycki J. A., Dobrinski B., Lurz B., Reeve J. N., HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones. Proceedings of the National Academy of Sciences of the United States of America 1990 87 15 5788 5791 2-s2.0-0025301592 10.1073/pnas.87.15.5788 (Pubitemid 20240373)
    • (1990) Proceedings of the National Academy of Sciences of the United States of America , vol.87 , Issue.15 , pp. 5788-5791
    • Sandman, K.1    Krzycki, J.A.2    Dobrinski, B.3    Lurz, B.4    Reeve, J.N.5
  • 14
    • 0031945225 scopus 로고    scopus 로고
    • Cell wall polymers in Archaea (Archaebacteria)
    • DOI 10.1007/s000180050156
    • Kandler O., König H., Cell wall polymers in Archaea (Archaebacteria). Cellular and Molecular Life Sciences 1998 54 4 305 308 2-s2.0-0031945225 10.1007/s000180050156 (Pubitemid 28192735)
    • (1998) Cellular and Molecular Life Sciences , vol.54 , Issue.4 , pp. 305-308
    • Kandler, O.1    Konig, H.2
  • 15
    • 0029814658 scopus 로고    scopus 로고
    • Lessons from an Archaeal genome: What are we learning from Methanococcus jannaschii?
    • DOI 10.1016/0168-9525(96)30092-9
    • Olsen G. J., Woese C. R., Lessons from an Archaeal genome: what are we learning from Methanococcus jannaschii? Trends in Genetics 1996 12 10 377 379 2-s2.0-0029814658 10.1016/0168-9525(96)30092-9 (Pubitemid 26336469)
    • (1996) Trends in Genetics , vol.12 , Issue.10 , pp. 377-379
    • Olsen, G.J.1    Woese, C.R.2
  • 16
    • 0037115872 scopus 로고    scopus 로고
    • Comparative analysis of ribosomal proteins in complete genomes: An example of reductive evolution at the domain scale
    • DOI 10.1093/nar/gkf693
    • Lecompte O., Ripp R., Thierry J.-C., Moras D., Poch O., Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Research 2002 30 24 5382 5390 2-s2.0-0037115872 10.1093/nar/gkf693 (Pubitemid 36113915)
    • (2002) Nucleic Acids Research , vol.30 , Issue.24 , pp. 5382-5390
    • Lecompte, O.1    Ripp, R.2    Thierry, J.-C.3    Moras, D.4    Poch, O.5
  • 17
    • 33845641827 scopus 로고    scopus 로고
    • DNA replication in the archaea
    • DOI 10.1128/MMBR.00029-06
    • Barry E. R., Bell S. D., DNA replication in the archaea. Microbiology and Molecular Biology Reviews 2006 70 4 876 887 2-s2.0-33845641827 10.1128/MMBR.00029-06 (Pubitemid 44958259)
    • (2006) Microbiology and Molecular Biology Reviews , vol.70 , Issue.4 , pp. 876-887
    • Barry, E.R.1    Bell, S.D.2
  • 19
    • 33646238682 scopus 로고    scopus 로고
    • Methanocaldococcus jannaschii uses a modified mevalonate pathway for biosynthesis of isopentenyl diphosphate
    • 2-s2.0-33646238682 10.1128/JB.188.9.3192-3198.2006
    • Grochowski L. L., Xu H., White R. H., Methanocaldococcus jannaschii uses a modified mevalonate pathway for biosynthesis of isopentenyl diphosphate. Journal of Bacteriology 2006 188 9 3192 3198 2-s2.0-33646238682 10.1128/JB.188.9.3192-3198.2006
    • (2006) Journal of Bacteriology , vol.188 , Issue.9 , pp. 3192-3198
    • Grochowski, L.L.1    Xu, H.2    White, R.H.3
  • 20
    • 42649112370 scopus 로고    scopus 로고
    • Early evolution of eukaryotic DNA-dependent RNA polymerases
    • 2-s2.0-42649112370 10.1016/j.tig.2008.02.002
    • Kwapisz M., Beckouët F., Thuriaux P., Early evolution of eukaryotic DNA-dependent RNA polymerases. Trends in Genetics 2008 24 5 211 215 2-s2.0-42649112370 10.1016/j.tig.2008.02.002
    • (2008) Trends in Genetics , vol.24 , Issue.5 , pp. 211-215
    • Kwapisz, M.1    Beckouët, F.2    Thuriaux, P.3
  • 21
    • 78651504121 scopus 로고    scopus 로고
    • Evolution of multisubunit RNA polymerases in the three domains of life
    • 2-s2.0-78651504121 10.1038/nrmicro2507
    • Werner F., Grohmann D., Evolution of multisubunit RNA polymerases in the three domains of life. Nature Reviews Microbiology 2011 9 2 85 98 2-s2.0-78651504121 10.1038/nrmicro2507
    • (2011) Nature Reviews Microbiology , vol.9 , Issue.2 , pp. 85-98
    • Werner, F.1    Grohmann, D.2
  • 22
    • 0032144071 scopus 로고    scopus 로고
    • Histones and nucleosomes in Archaea and Eukarya: A comparative analysis
    • DOI 10.1007/s007920050053
    • Pereira S. L., Reeve J. N., Histones and nucleosomes in Archaea and Eukarya: a comparative analysis. Extremophiles 1998 2 3 141 148 2-s2.0-0032144071 10.1007/s007920050053 (Pubitemid 28407992)
    • (1998) Extremophiles , vol.2 , Issue.3 , pp. 141-148
    • Pereira, S.L.1    Reeve, J.N.2
  • 25
    • 58149230938 scopus 로고    scopus 로고
    • A role for the ESCRT system in cell division in archaea
    • 2-s2.0-58149230938 10.1126/science.1165322
    • Samson R. Y., Obita T., Freund S. M., Williams R. L., Bell S. D., A role for the ESCRT system in cell division in archaea. Science 2008 322 5908 1710 1713 2-s2.0-58149230938 10.1126/science.1165322
    • (2008) Science , vol.322 , Issue.5908 , pp. 1710-1713
    • Samson, R.Y.1    Obita, T.2    Freund, S.M.3    Williams, R.L.4    Bell, S.D.5
  • 27
    • 84872613033 scopus 로고    scopus 로고
    • Chromatin is an ancient innovation conserved between Archaea and Eukarya
    • e00078 10.7554/eLife.00078
    • Ammar R., Torti D., Tsui K., Gebbia M., Durbic T., Bader G. D., Giaever G., Nislow C., Chromatin is an ancient innovation conserved between Archaea and Eukarya. Elife 2012 1 e00078 10.7554/eLife.00078
    • (2012) Elife , vol.1
    • Ammar, R.1    Torti, D.2    Tsui, K.3    Gebbia, M.4    Durbic, T.5    Bader, G.D.6    Giaever, G.7    Nislow, C.8
  • 28
    • 84858968457 scopus 로고    scopus 로고
    • Archaeal origin of tubulin
    • 2-s2.0-84858968457 10.1186/1745-6150-7-10
    • Yutin N., Koonin E. V., Archaeal origin of tubulin. Biology Direct 2012 7, article 10 2-s2.0-84858968457 10.1186/1745-6150-7-10
    • (2012) Biology Direct , vol.710
    • Yutin, N.1    Koonin, E.V.2
  • 30
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • DOI 10.1073/pnas.87.12.4576
    • Woese C. R., Kandler O., Wheelis M. L., Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proceedings of the National Academy of Sciences of the United States of America 1990 87 12 4576 4579 2-s2.0-0025300402 10.1073/pnas.87.12.4576 (Pubitemid 20204145)
    • (1990) Proceedings of the National Academy of Sciences of the United States of America , vol.87 , Issue.12 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 31
    • 19144373707 scopus 로고    scopus 로고
    • Genomic studies of uncultivated archaea
    • DOI 10.1038/nrmicro1159
    • Schleper C., Jurgens G., Jonuscheit M., Genomic studies of uncultivated archaea. Nature Reviews Microbiology 2005 3 6 479 488 2-s2.0-19144373707 10.1038/nrmicro1159 (Pubitemid 40716174)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.6 , pp. 479-488
    • Schleper, C.1    Jurgens, G.2    Jonuscheit, M.3
  • 32
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine subsurface sediments: Have we caught them all?
    • DOI 10.1038/ismej.2007.90, PII ISMEJ200790
    • Teske A., Sørensen K. B., Uncultured archaea in deep marine subsurface sediments: have we caught them all? The ISME Journal 2008 2 1 3 18 2-s2.0-41149093627 10.1038/ismej.2007.90 (Pubitemid 351612350)
    • (2008) ISME Journal , vol.2 , Issue.1 , pp. 3-18
    • Teske, A.1    Sorensen, K.B.2
  • 33
    • 84881138595 scopus 로고    scopus 로고
    • Insights into the phylogeny and coding potential of microbial dark matter
    • 10.1038/nature12352
    • Rinke C., Schwientek P., Sczyrba A., Insights into the phylogeny and coding potential of microbial dark matter. Nature 2013 10.1038/nature12352
    • (2013) Nature
    • Rinke, C.1    Schwientek, P.2    Sczyrba, A.3
  • 34
    • 0028902592 scopus 로고
    • Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder
    • 2-s2.0-0028902592
    • McInerney J. O., Wilkinson M., Patching J. W., Embley T. M., Powell R., Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder. Applied and Environmental Microbiology 1995 61 4 1646 1648 2-s2.0-0028902592
    • (1995) Applied and Environmental Microbiology , vol.61 , Issue.4 , pp. 1646-1648
    • McInerney, J.O.1    Wilkinson, M.2    Patching, J.W.3    Embley, T.M.4    Powell, R.5
  • 35
    • 0031769609 scopus 로고    scopus 로고
    • Everything in moderation: Archaea as 'non-extremophiles'
    • DOI 10.1016/S0959-437X(98)80032-4
    • Delong E. F., Everything in moderation: Archaea as 'non-extremophiles'. Current Opinion in Genetics & Development 1998 8 6 649 654 2-s2.0-0031769609 10.1016/S0959-437X(98)80032-4 (Pubitemid 28558526)
    • (1998) Current Opinion in Genetics and Development , vol.8 , Issue.6 , pp. 649-654
    • Delong, E.F.1
  • 36
    • 0344035670 scopus 로고    scopus 로고
    • Genetic diversity of archaea in deep-sea hydrothermal vent environments
    • Takai K., Horikoshi K., Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 1999 152 4 1285 1297 2-s2.0-0344035670 (Pubitemid 29370312)
    • (1999) Genetics , vol.152 , Issue.4 , pp. 1285-1297
    • Takai, K.1    Horikoshi, K.2
  • 37
    • 33845898858 scopus 로고    scopus 로고
    • Lineages of acidophilic archaea revealed by community genomic analysis
    • DOI 10.1126/science.1132690
    • Baker B. J., Tyson G. W., Webb R. I., Flanagan J., Hugenholtz P., Allen E. E., Banfield J. F., Lineages of acidophilic archaea revealed by community genomic analysis. Science 2006 314 5807 1933 1935 2-s2.0-33845898858 10.1126/science.1132690 (Pubitemid 46026116)
    • (2006) Science , vol.314 , Issue.5807 , pp. 1933-1935
    • Baker, B.J.1    Tyson, G.W.2    Webb, R.I.3    Flanagan, J.4    Hugenholtz, P.5    Allen, E.E.6    Banfield, J.F.7
  • 38
    • 33744483524 scopus 로고    scopus 로고
    • Archaeal habitats - From the extreme to the ordinary
    • DOI 10.1139/w05-147
    • Chaban B., Ng S. Y. M., Jarrell K. F., Archaeal habitats-from the extreme to the ordinary. Canadian Journal of Microbiology 2006 52 2 73 116 2-s2.0-33744483524 10.1139/w05-147 (Pubitemid 43806441)
    • (2006) Canadian Journal of Microbiology , vol.52 , Issue.2 , pp. 73-116
    • Chaban, B.1    Ng, S.Y.M.2    Jarrell, K.F.3
  • 39
    • 84867745042 scopus 로고    scopus 로고
    • Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
    • 2-s2.0-84860598331 10.1038/ismej.2012.37
    • Kubo K., Lloyd K. G., F Biddle J., Amann R., Teske A., Knittel K., Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. The ISME Journal 2012 6 1949 1965 2-s2.0-84860598331 10.1038/ismej.2012.37
    • (2012) The ISME Journal , vol.6 , pp. 1949-1965
    • Kubo, K.1    Lloyd, K.G.2    Biddle J, F.3    Amann, R.4    Teske, A.5    Knittel, K.6
  • 41
    • 0037007636 scopus 로고    scopus 로고
    • A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
    • DOI 10.1038/417063a
    • Huber H., Hohn M. J., Rachel R., Fuchs T., Wimmer V. C., Stetter K. O., A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 2002 417 6884 63 67 2-s2.0-0037007636 10.1038/417063a (Pubitemid 34498815)
    • (2002) Nature , vol.417 , Issue.6884 , pp. 63-67
    • Huber, H.1    Hohn, M.J.2    Rachel, R.3    Fuchs, T.4    Wimmer, V.C.5    Stetter, K.O.6
  • 42
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
    • DOI 10.1038/nrmicro1852, PII NRMICRO1852
    • Brochier-Armanet C., Boussau B., Gribaldo S., Forterre P., Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nature Reviews Microbiology 2008 6 3 245 252 2-s2.0-39149118031 10.1038/nrmicro1852 (Pubitemid 351256319)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.3 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3    Forterre, P.4
  • 45
  • 46
    • 84876497542 scopus 로고    scopus 로고
    • Geoarchaeota: A new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park
    • Kozubal M. A., Romine M., Jennings R., Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. The ISME Journal 2013 7 622 634
    • (2013) The ISME Journal , vol.7 , pp. 622-634
    • Kozubal, M.A.1    Romine, M.2    Jennings, R.3
  • 47
    • 84884233716 scopus 로고    scopus 로고
    • Archaea in biogeochemical cycles
    • 10.1146/annurev-micro-092412-155614
    • Offre P., Spang A., Schleper C., Archaea in biogeochemical cycles. Annual Review of Microbiology 2013 67 437 457 10.1146/annurev-micro-092412-155614
    • (2013) Annual Review of Microbiology , vol.67 , pp. 437-457
    • Offre, P.1    Spang, A.2    Schleper, C.3
  • 48
    • 25644435673 scopus 로고    scopus 로고
    • Isolation of an autotrophic ammonia-oxidizing marine archaeon
    • DOI 10.1038/nature03911, PII N03911
    • Könneke M., Bernhard A. E., de la Torre J. R., Walker C. B., Waterbury J. B., Stahl D. A., Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 2005 437 7058 543 546 2-s2.0-25644435673 10.1038/nature03911 (Pubitemid 41613550)
    • (2005) Nature , vol.437 , Issue.7058 , pp. 543-546
    • Konneke, M.1    Bernhard, A.E.2    De La Torre, J.R.3    Walker, C.B.4    Waterbury, J.B.5    Stahl, D.A.6
  • 49
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • DOI 10.1111/j.1462-2920.2005.00906.x
    • Treusch A. H., Leininger S., Kietzin A., Schuster S. C., Klenk H.-P., Schleper C., Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environmental Microbiology 2005 7 12 1985 1995 2-s2.0-28644435323 10.1111/j.1462-2920.2005.00906.x (Pubitemid 41752386)
    • (2005) Environmental Microbiology , vol.7 , Issue.12 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kietzin, A.3    Schuster, S.C.4    Klenk, H.-P.5    Schleper, C.6
  • 50
    • 70349559191 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane: Progress with an unknown process
    • 2-s2.0-70349559191 10.1146/annurev.micro.61.080706.093130
    • Knittel K., Boetius A., Anaerobic oxidation of methane: progress with an unknown process. Annual Review of Microbiology 2009 63 311 334 2-s2.0-70349559191 10.1146/annurev.micro.61.080706.093130
    • (2009) Annual Review of Microbiology , vol.63 , pp. 311-334
    • Knittel, K.1    Boetius, A.2
  • 51
    • 0345299175 scopus 로고    scopus 로고
    • Metabolic symbiosis at the origin of eukaryotes
    • DOI 10.1016/S0968-0004(98)01342-5, PII S0968000498013425
    • López-Garćia P., Moreira D., Metabolic symbiosis at the origin of eukaryotes. Trends in Biochemical Sciences 1999 24 88 93 (Pubitemid 29225240)
    • (1999) Trends in Biochemical Sciences , vol.24 , Issue.3 , pp. 88-93
    • Lopez-Garcia, P.1    Moreira, D.2
  • 52
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • 2-s2.0-33645456207 10.1038/nature04546
    • Embley T. M., Martin W., Eukaryotic evolution, changes and challenges. Nature 2006 440 7084 623 630 2-s2.0-33645456207 10.1038/nature04546
    • (2006) Nature , vol.440 , Issue.7084 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 53
    • 62349137215 scopus 로고    scopus 로고
    • The origins of phagocytosis and eukaryogenesis
    • 2-s2.0-62349137215 10.1186/1745-6150-4-9
    • Yutin N., Wolf M. Y., Wolf Y. I., Koonin E. V., The origins of phagocytosis and eukaryogenesis. Biology Direct 2009 4, article 9 2-s2.0-62349137215 10.1186/1745-6150-4-9
    • (2009) Biology Direct , vol.49
    • Yutin, N.1    Wolf, M.Y.2    Wolf, Y.I.3    Koonin, E.V.4
  • 54
    • 77957134043 scopus 로고    scopus 로고
    • The origin of eukaryotes and their relationship with the Archaea: Are we at a phylogenomic impasse?
    • 2-s2.0-77957134043 10.1038/nrmicro2426
    • Gribaldo S., Poole A. M., Daubin V., Forterre P., Brochier-Armanet C., The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? Nature Reviews Microbiology 2010 8 10 743 752 2-s2.0-77957134043 10.1038/nrmicro2426
    • (2010) Nature Reviews Microbiology , vol.8 , Issue.10 , pp. 743-752
    • Gribaldo, S.1    Poole, A.M.2    Daubin, V.3    Forterre, P.4    Brochier-Armanet, C.5
  • 55
    • 82355180998 scopus 로고    scopus 로고
    • The archaeal "tACK" superphylum and the origin of eukaryotes
    • 2-s2.0-82355180998 10.1016/j.tim.2011.09.002
    • Guy L., Ettema T. J. G., The archaeal "TACK" superphylum and the origin of eukaryotes. Trends in Microbiology 2011 19 12 580 587 2-s2.0-82355180998 10.1016/j.tim.2011.09.002
    • (2011) Trends in Microbiology , vol.19 , Issue.12 , pp. 580-587
    • Guy, L.1    Ettema, T.J.G.2
  • 56
    • 84869133972 scopus 로고    scopus 로고
    • A congruent phylogenomic signal places eukaryotes within the Archaea
    • 10.1098/rspb.2012.1795
    • Williams T. A., Foster P. G., Nye T. M. W., Cox C. J., Embley T. M., A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings of the Royal Society B 2012 279 1749 4870 4879 10.1098/rspb.2012.1795
    • (2012) Proceedings of the Royal Society B , vol.279 , Issue.1749 , pp. 4870-4879
    • Williams, T.A.1    Foster, P.G.2    Nye, T.M.W.3    Cox, C.J.4    Embley, T.M.5
  • 57
    • 84870950237 scopus 로고    scopus 로고
    • Updated clusters of orthologous genes for Archaea: A complex ancestor of the Archaea and the byways of horizontal gene transfer
    • Wolf Y. I., Makarova K. S., Yutin N., Koonin E. V., Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. Biology Direct 2012 7, article 46
    • (2012) Biology Direct , vol.746
    • Wolf, Y.I.1    Makarova, K.S.2    Yutin, N.3    Koonin, E.V.4
  • 58
    • 84873164495 scopus 로고    scopus 로고
    • From archaeon to eukaryote: The evolutionary dark ages of the eukaryotic cell
    • Martijn J., Ettema Thijs J. G., From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell. Biochemical Society Transactions 2013 41 451 457
    • (2013) Biochemical Society Transactions , vol.41 , pp. 451-457
    • Martijn, J.1    Ettema Thijs, J.G.2
  • 59
    • 54149086091 scopus 로고    scopus 로고
    • Hydrothermal vents and the origin of life
    • 2-s2.0-54149086091 10.1038/nrmicro1991
    • Martin W., Baross J., Kelley D., Russell M. J., Hydrothermal vents and the origin of life. Nature Reviews Microbiology 2008 6 11 805 814 2-s2.0-54149086091 10.1038/nrmicro1991
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.11 , pp. 805-814
    • Martin, W.1    Baross, J.2    Kelley, D.3    Russell, M.J.4
  • 60
    • 84871587989 scopus 로고    scopus 로고
    • The origin of membrane bioenergetics
    • Lane N., Martin W. F., The origin of membrane bioenergetics. Cell 2012 151 1406 1416
    • (2012) Cell , vol.151 , pp. 1406-1416
    • Lane, N.1    Martin, W.F.2
  • 61
    • 84862815590 scopus 로고    scopus 로고
    • Methanogens: A window into ancient sulfur metabolism
    • 2-s2.0-84860557696 10.1016/j.tim.2012.02.002
    • Liu Y., Beer L. L., Whitman W. B., Methanogens: a window into ancient sulfur metabolism. Trends in Microbiology 2012 20 5 251 258 2-s2.0-84860557696 10.1016/j.tim.2012.02.002
    • (2012) Trends in Microbiology , vol.20 , Issue.5 , pp. 251-258
    • Liu, Y.1    Beer, L.L.2    Whitman, W.B.3
  • 63
    • 33645309348 scopus 로고    scopus 로고
    • Evidence from fluid inclusions for microbial methanogenesis in the early Archaean era
    • 2-s2.0-33645309348 10.1038/nature04584
    • Ueno Y., Yamada K., Yoshida N., Maruyama S., Isozaki Y., Evidence from fluid inclusions for microbial methanogenesis in the early Archaean era. Nature 2006 440 7083 516 519 2-s2.0-33645309348 10.1038/nature04584
    • (2006) Nature , vol.440 , Issue.7083 , pp. 516-519
    • Ueno, Y.1    Yamada, K.2    Yoshida, N.3    Maruyama, S.4    Isozaki, Y.5
  • 64
    • 79959307333 scopus 로고    scopus 로고
    • Phylogeny and evolution of the Archaea: One hundred genomes later
    • 2-s2.0-79959307333 10.1016/j.mib.2011.04.015
    • Brochier-Armanet C., Forterre P., Gribaldo S., Phylogeny and evolution of the Archaea: one hundred genomes later. Current Opinion in Microbiology 2011 14 3 274 281 2-s2.0-79959307333 10.1016/j.mib.2011.04.015
    • (2011) Current Opinion in Microbiology , vol.14 , Issue.3 , pp. 274-281
    • Brochier-Armanet, C.1    Forterre, P.2    Gribaldo, S.3
  • 65
    • 84861219308 scopus 로고    scopus 로고
    • Phylogenomics of prokaryotic ribosomal proteins
    • e36972 10.1371/journal.pone.0036972
    • Yutin N., Puigbò P., Koonin E. V., Wolf Y. I., Phylogenomics of prokaryotic ribosomal proteins. PLoS ONE 2012 7 5 e36972 10.1371/journal.pone. 0036972
    • (2012) PLoS ONE , vol.7 , Issue.5
    • Yutin, N.1    Puigbò, P.2    Koonin, E.V.3    Wolf, Y.I.4
  • 66
    • 80052160609 scopus 로고    scopus 로고
    • Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea
    • 2-s2.0-80052160609 10.1093/molbev/msr098
    • Groussin M., Gouy M., Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea. Molecular Biology and Evolution 2011 28 9 2661 2674 2-s2.0-80052160609 10.1093/molbev/msr098
    • (2011) Molecular Biology and Evolution , vol.28 , Issue.9 , pp. 2661-2674
    • Groussin, M.1    Gouy, M.2
  • 67
    • 4544235395 scopus 로고    scopus 로고
    • Archaeal phylogeny based on proteins of the transcription and translation machineries: Tackling the Methanopyrus kandleri paradox
    • 2-s2.0-4544235395
    • Brochier C., Forterre P., Gribaldo S., Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox. Genome Biology 2004 5 3 R17 2-s2.0-4544235395
    • (2004) Genome Biology , vol.5 , Issue.3
    • Brochier, C.1    Forterre, P.2    Gribaldo, S.3
  • 68
    • 38949147846 scopus 로고    scopus 로고
    • Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
    • DOI 10.1186/1745-6150-2-33
    • Makarova K. S., Sorokin A. V., Novichkov P. S., Wolf Y. I., Koonin E. V., Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea. Biology Direct 2007 2, article 33 2-s2.0-38949147846 10.1186/1745-6150-2-33 (Pubitemid 351222131)
    • (2007) Biology Direct , vol.2 , pp. 33
    • Makarova, K.S.1    Sorokin, A.V.2    Novichkov, P.S.3    Wolf, Y.I.4    Koonin, E.V.5
  • 69
    • 84874964884 scopus 로고    scopus 로고
    • Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
    • 2-s2.0-79958252630 10.1098/rspb.2010.1427
    • Kelly S., Wickstead B., Gull K., Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes. Proceedings of the Royal Society B 2011 278 1708 1009 1018 2-s2.0-79958252630 10.1098/rspb.2010.1427
    • (2011) Proceedings of the Royal Society B , vol.278 , Issue.1708 , pp. 1009-1018
    • Kelly, S.1    Wickstead, B.2    Gull, K.3
  • 71
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
    • 2-s2.0-69949126557 10.1093/bioinformatics/btp368
    • Lartillot N., Lepage T., Blanquart S., PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009 25 17 2286 2288 2-s2.0-69949126557 10.1093/bioinformatics/btp368
    • (2009) Bioinformatics , vol.25 , Issue.17 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 72
    • 77957951370 scopus 로고    scopus 로고
    • How to make a living by exhaling methane
    • 2-s2.0-77957951370 10.1146/annurev.micro.112408.134051
    • Ferry J. G., How to make a living by exhaling methane. Annual Review of Microbiology 2010 64 453 473 2-s2.0-77957951370 10.1146/annurev.micro.112408. 134051
    • (2010) Annual Review of Microbiology , vol.64 , pp. 453-473
    • Ferry, J.G.1
  • 75
    • 84870794077 scopus 로고    scopus 로고
    • 'Methanoplasmatales,' Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens
    • Paul K., Nonoh J. O., Mikulski L., Brune A., 'Methanoplasmatales,' Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens. Applied and Environmental Microbiology 2012 78 8245 8253
    • (2012) Applied and Environmental Microbiology , vol.78 , pp. 8245-8253
    • Paul, K.1    Nonoh, J.O.2    Mikulski, L.3    Brune, A.4
  • 76
    • 84890110026 scopus 로고    scopus 로고
    • Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis
    • 10.1093/gbe/evt128
    • Borrel G., O'Toole P. W., Harris H. M. B., Peyret P., Brugère J.-F., Gribaldo S., Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis. Genome Biology and Evolution 2013 10.1093/gbe/evt128
    • (2013) Genome Biology and Evolution
    • Borrel, G.1    O'Toole, P.W.2    Harris, H.M.B.3    Peyret, P.4    Brugère, J.-F.5    Gribaldo, S.6
  • 77
    • 84874400864 scopus 로고    scopus 로고
    • Acquisition of 1, 000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
    • Nelson-Sathi S., Dagan T., Landan G., Acquisition of 1, 000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proceedings of the National Academy of Sciences 2012 109 20537 20542
    • (2012) Proceedings of the National Academy of Sciences , vol.109 , pp. 20537-20542
    • Nelson-Sathi, S.1    Dagan, T.2    Landan, G.3
  • 78
    • 0027408070 scopus 로고
    • 10-methylenetetrahydromethanopterin dehydrogenase from the sulfate-reducing Archaeoglobus fulgidus: Similarities with the enzymes from methanogenic Archaea
    • Schworer B., Breitung J., Klein A. R., Stetter K. O., Thauer R. K., Formylmethanofuran: tetrahydromethanopterin formyltransferase and N5,N10-methylenetetrahydromethanopterin dehydrogenase from the sulfate-reducing Archaeoglobus fulgidus: similarities with the enzymes from methanogenic Archaea. Archives of Microbiology 1993 159 3 225 232 2-s2.0-0027408070 (Pubitemid 23067022)
    • (1993) Archives of Microbiology , vol.159 , Issue.3 , pp. 225-232
    • Schworer, B.1    Breitung, J.2    Klein, A.R.3    Stetter, K.O.4    Thauer, R.K.5
  • 80
    • 72449195699 scopus 로고    scopus 로고
    • Formal proof that the split genes of tRNAs of nanoarchaeum equitans are an ancestral character
    • 2-s2.0-72449195699 10.1007/s00239-009-9280-z
    • Di Giulio M., Formal proof that the split genes of tRNAs of nanoarchaeum equitans are an ancestral character. Journal of Molecular Evolution 2009 69 5 505 511 2-s2.0-72449195699 10.1007/s00239-009-9280-z
    • (2009) Journal of Molecular Evolution , vol.69 , Issue.5 , pp. 505-511
    • Di Giulio, M.1
  • 81
    • 25144485401 scopus 로고    scopus 로고
    • Nanoarchaea: Representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?
    • 2-s2.0-25144485401
    • Brochier C., Gribaldo S., Zivanovic Y., Confalonieri F., Forterre P., Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? Genome Biology 2005 6 5 R42 2-s2.0-25144485401
    • (2005) Genome Biology , vol.6 , Issue.5
    • Brochier, C.1    Gribaldo, S.2    Zivanovic, Y.3    Confalonieri, F.4    Forterre, P.5
  • 83
    • 84876741070 scopus 로고    scopus 로고
    • Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park
    • Podar M., Makarova K. S., Graham D. E., Wolf Y. I., Koonin E. V., Reysenbach A.-L., Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park. Biology Direct 2013 8, article 9
    • (2013) Biology Direct , vol.89
    • Podar, M.1    Makarova, K.S.2    Graham, D.E.3    Wolf, Y.I.4    Koonin, E.V.5    Reysenbach, A.-L.6
  • 85
    • 58249106878 scopus 로고    scopus 로고
    • A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya
    • 2-s2.0-58249106878 10.1186/1745-6150-3-54
    • Brochier-Armanet C., Gribaldo S., Forterre P., A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya. Biology Direct 2008 3, article 54 2-s2.0-58249106878 10.1186/1745-6150-3-54
    • (2008) Biology Direct , vol.354
    • Brochier-Armanet, C.1    Gribaldo, S.2    Forterre, P.3
  • 86
    • 79952431206 scopus 로고    scopus 로고
    • Molecular signatures for the Crenarchaeota and the Thaumarchaeota
    • 2-s2.0-79952431206 10.1007/s10482-010-9488-3
    • Gupta R. S., Shami A., Molecular signatures for the Crenarchaeota and the Thaumarchaeota. Antonie van Leeuwenhoek 2011 99 2 133 157 2-s2.0-79952431206 10.1007/s10482-010-9488-3
    • (2011) Antonie Van Leeuwenhoek , vol.99 , Issue.2 , pp. 133-157
    • Gupta, R.S.1    Shami, A.2
  • 87
    • 79959289950 scopus 로고    scopus 로고
    • The Thaumarchaeota: An emerging view of their phylogeny and ecophysiology
    • 2-s2.0-79959289950 10.1016/j.mib.2011.04.007
    • Pester M., Schleper C., Wagner M., The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Current Opinion in Microbiology 2011 14 3 300 306 2-s2.0-79959289950 10.1016/j.mib.2011.04.007
    • (2011) Current Opinion in Microbiology , vol.14 , Issue.3 , pp. 300-306
    • Pester, M.1    Schleper, C.2    Wagner, M.3
  • 89
    • 28644447444 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments
    • DOI 10.1111/j.1462-2920.2005.00881.x
    • Nunoura T., Hirayama H., Takami H., Oida H., Nishi S., Shimamura S., Suzuki Y., Inagaki F., Takai K., Nealson K. H., Horikoshi K., Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments. Environmental Microbiology 2005 7 12 1967 1984 2-s2.0-28644447444 10.1111/j.1462-2920.2005. 00881.x (Pubitemid 41752385)
    • (2005) Environmental Microbiology , vol.7 , Issue.12 , pp. 1967-1984
    • Nunoura, T.1    Hirayama, H.2    Takami, H.3    Oida, H.4    Nishi, S.5    Shimamura, S.6    Suzuki, Y.7    Inagaki, F.8    Takai, K.9    Nealson, K.H.10    Horikoshi, K.11
  • 91
    • 84855952198 scopus 로고    scopus 로고
    • Spotlight on the Thaumarchaeota
    • 2-s2.0-84855952198 10.1038/ismej.2011.145
    • Brochier-Armanet C., Gribaldo S., Forterre P., Spotlight on the Thaumarchaeota. The ISME Journal 2012 6 2 227 230 2-s2.0-84855952198 10.1038/ismej.2011.145
    • (2012) The ISME Journal , vol.6 , Issue.2 , pp. 227-230
    • Brochier-Armanet, C.1    Gribaldo, S.2    Forterre, P.3
  • 92
    • 84860560191 scopus 로고    scopus 로고
    • Time for order in microbial systematics
    • 2-s2.0-84860560191 10.1016/j.tim.2012.02.006
    • Gribaldo S., Brochier-Armanet C., Time for order in microbial systematics. Trends in Microbiology 2012 20 5 209 210 2-s2.0-84860560191 10.1016/j.tim.2012.02.006
    • (2012) Trends in Microbiology , vol.20 , Issue.5 , pp. 209-210
    • Gribaldo, S.1    Brochier-Armanet, C.2
  • 93
    • 33748369465 scopus 로고    scopus 로고
    • The last eukaryotic common ancestor (LECA): Acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon
    • DOI 10.1073/pnas.0604985103
    • Margulis L., Chapman M., Guerrero R., Hall J., The last eukaryotic common ancestor (LECA): acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon. Proceedings of the National Academy of Sciences of the United States of America 2006 103 35 13080 13085 2-s2.0-33748369465 10.1073/pnas.0604985103 (Pubitemid 44338919)
    • (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.35 , pp. 13080-13085
    • Margulis, L.1    Chapman, M.2    Guerrero, R.3    Hall, J.4
  • 94
    • 0031735879 scopus 로고    scopus 로고
    • Symbiosis between methanogenic archaea and δ-proteobacteria as the origin of eukaryotes: The syntrophic hypothesis
    • DOI 10.1007/PL00006408
    • Moreira D., López-García P., Symbiosis between methanogenic archaea and δ -proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. Journal of Molecular Evolution 1998 47 5 517 530 2-s2.0-0031735879 10.1007/PL00006408 (Pubitemid 28507472)
    • (1998) Journal of Molecular Evolution , vol.47 , Issue.5 , pp. 517-530
    • Moreira, D.1    Lopez-Garcia, P.2
  • 95
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • DOI 10.1038/32096
    • Martin W., Müller M., The hydrogen hypothesis for the first eukaryote. Nature 1998 392 6671 37 41 2-s2.0-2642689666 10.1038/32096 (Pubitemid 28150580)
    • (1998) Nature , vol.392 , Issue.6671 , pp. 37-41
    • Martin, W.1    Muller, M.2
  • 96
    • 0024285855 scopus 로고
    • Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
    • 2-s2.0-0024285855
    • Lake J. A., Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature 1988 331 6152 184 186 2-s2.0-0024285855
    • (1988) Nature , vol.331 , Issue.6152 , pp. 184-186
    • Lake, J.A.1
  • 97
    • 84876291747 scopus 로고    scopus 로고
    • Predominant archaea in marine sediments degrade detrital proteins
    • Lloyd K. G., Schreiber L., Petersen D. G., Predominant archaea in marine sediments degrade detrital proteins. Nature 2013 496 215 218
    • (2013) Nature , vol.496 , pp. 215-218
    • Lloyd, K.G.1    Schreiber, L.2    Petersen, D.G.3
  • 98
    • 84871276132 scopus 로고    scopus 로고
    • Microbial iron cycling in acidic geothermal springs of yellowstone national park: Integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms
    • Kozubal M. A., Macur R. E., Jay Z. J., Microbial iron cycling in acidic geothermal springs of yellowstone national park: integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms. Frontiers in Microbiology 2012 3, article 109
    • (2012) Frontiers in Microbiology , vol.3109
    • Kozubal, M.A.1    Macur, R.E.2    Jay, Z.J.3
  • 100
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • DOI 10.1073/pnas.86.23.9355
    • Iwabe N., Kuma K., Hasegawa M., Osawa S., Miyata T., Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proceedings of the National Academy of Sciences of the United States of America 1989 86 23 9355 9359 2-s2.0-0024358140 10.1073/pnas.86.23.9355 (Pubitemid 20010424)
    • (1989) Proceedings of the National Academy of Sciences of the United States of America , vol.86 , Issue.23 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 101
    • 0031735878 scopus 로고    scopus 로고
    • The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery
    • DOI 10.1007/PL00006407
    • Gribaldo S., Cammarano P., The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery. Journal of Molecular Evolution 1998 47 5 508 516 2-s2.0-0031735878 10.1007/PL00006407 (Pubitemid 28507471)
    • (1998) Journal of Molecular Evolution , vol.47 , Issue.5 , pp. 508-516
    • Gribaldo, S.1    Cammarano, P.2
  • 102
    • 29944434209 scopus 로고    scopus 로고
    • Ancient gene duplications and the root(s) of the tree of life
    • DOI 10.1007/s00709-005-0135-1
    • Zhaxybayeva O., Lapierre P., Gogarten J. P., Ancient gene duplications and the root(s) of the tree of life. Protoplasma 2005 227 1 53 64 2-s2.0-29944434209 10.1007/s00709-005-0135-1 (Pubitemid 43042188)
    • (2005) Protoplasma , vol.227 , Issue.1 , pp. 53-64
    • Zhaxybayeva, O.1    Lapierre, P.2    Gogarten, J.P.3
  • 103
    • 57749185463 scopus 로고    scopus 로고
    • Parallel adaptations to high temperatures in the Archaean eon
    • 2-s2.0-57749185463 10.1038/nature07393
    • Boussau B., Blanquart S., Necsulea A., Lartillot N., Gouy M., Parallel adaptations to high temperatures in the Archaean eon. Nature 2008 456 7224 942 945 2-s2.0-57749185463 10.1038/nature07393
    • (2008) Nature , vol.456 , Issue.7224 , pp. 942-945
    • Boussau, B.1    Blanquart, S.2    Necsulea, A.3    Lartillot, N.4    Gouy, M.5
  • 104
    • 77958506738 scopus 로고    scopus 로고
    • Genome networks root the tree of life between prokaryotic domains
    • 2-s2.0-77958506738 10.1093/gbe/evq025
    • Dagan T., Roettger M., Bryant D., Martin W., Genome networks root the tree of life between prokaryotic domains. Genome Biology and Evolution 2010 2 1 379 392 2-s2.0-77958506738 10.1093/gbe/evq025
    • (2010) Genome Biology and Evolution , vol.2 , Issue.1 , pp. 379-392
    • Dagan, T.1    Roettger, M.2    Bryant, D.3    Martin, W.4
  • 105
    • 33846349924 scopus 로고    scopus 로고
    • Rooting the tree of life by transition analyses
    • DOI 10.1186/1745-6150-1-19
    • Cavalier-Smith T., Rooting the tree of life by transition analyses. Biology Direct 2006 1, article 19 2-s2.0-33846349924 10.1186/1745-6150-1-19 (Pubitemid 46730979)
    • (2006) Biology Direct , vol.1 , pp. 19
    • Cavalier-Smith, T.1
  • 108
    • 34548471983 scopus 로고    scopus 로고
    • The tree of life might be rooted in the branch leading to Nanoarchaeota
    • DOI 10.1016/j.gene.2007.07.004, PII S0378111907003691
    • Di Giulio M., The tree of life might be rooted in the branch leading to Nanoarchaeota. Gene 2007 401 1-2 108 113 2-s2.0-34548471983 10.1016/j.gene.2007. 07.004 (Pubitemid 47379518)
    • (2007) Gene , vol.401 , Issue.1-2 , pp. 108-113
    • Di Giulio, M.1
  • 109
    • 84862830777 scopus 로고    scopus 로고
    • The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms
    • article 13 2-s2.0-84856162090 10.1186/1471-2148-12-13
    • Kim K. M., Caetano-Anollés G., The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms. BMC Evolutionary Biology 2012 12 1, article 13 2-s2.0-84856162090 10.1186/1471-2148-12-13
    • (2012) BMC Evolutionary Biology , vol.12 , Issue.1
    • Kim, K.M.1    Caetano-Anollés, G.2
  • 110
    • 33646726959 scopus 로고    scopus 로고
    • Genomics and the irreducible nature of eukaryote cells
    • 2-s2.0-33646726959 10.1126/science.1121674
    • Kurland C. G., Collins L. J., Penny D., Genomics and the irreducible nature of eukaryote cells. Science 2006 312 5776 1011 1014 2-s2.0-33646726959 10.1126/science.1121674
    • (2006) Science , vol.312 , Issue.5776 , pp. 1011-1014
    • Kurland, C.G.1    Collins, L.J.2    Penny, D.3
  • 111
    • 48249124600 scopus 로고    scopus 로고
    • The Last Universal Common Ancestor: Emergence, constitution and genetic legacy of an elusive forerunner
    • 2-s2.0-48249124600 10.1186/1745-6150-3-29
    • Glansdorff N., Xu Y., Labedan B., The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunner. Biology Direct 2008 3, article 29 2-s2.0-48249124600 10.1186/1745-6150-3-29
    • (2008) Biology Direct , vol.329
    • Glansdorff, N.1    Xu, Y.2    Labedan, B.3
  • 112
    • 0024967146 scopus 로고
    • Molecular phylogeny. Archaebacteria and Archezoa
    • 2-s2.0-0024967146
    • Cavalier-Smith T., Molecular phylogeny. Archaebacteria and Archezoa. Nature 1989 339 6220 l00 01 2-s2.0-0024967146
    • (1989) Nature , vol.339 , Issue.6220
    • Cavalier-Smith, T.1
  • 113
    • 33846632221 scopus 로고    scopus 로고
    • Evaluating hypotheses for the origin of eukaryotes
    • DOI 10.1002/bies.20516
    • Poole A. M., Penny D., Evaluating hypotheses for the origin of eukaryotes. BioEssays 2007 29 1 74 84 2-s2.0-33846632221 10.1002/bies.20516 (Pubitemid 46181806)
    • (2007) BioEssays , vol.29 , Issue.1 , pp. 74-84
    • Poole, A.M.1    Penny, D.2
  • 114
    • 0036155782 scopus 로고    scopus 로고
    • The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
    • Cavalier-Smith T., The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. International Journal of Systematic and Evolutionary Microbiology 2002 52 1 7 76 2-s2.0-0036155782 (Pubitemid 34105691)
    • (2002) International Journal of Systematic and Evolutionary Microbiology , vol.52 , Issue.1 , pp. 7-76
    • Cavalier-Smith, T.1
  • 115
    • 78649395975 scopus 로고    scopus 로고
    • Evolution. Intermediate steps
    • 2-s2.0-78649395975 10.1126/science.1196720
    • Devos D. P., Reynaud E. G., Evolution. Intermediate steps. Science 2010 330 6008 1187 1188 2-s2.0-78649395975 10.1126/science.1196720
    • (2010) Science , vol.330 , Issue.6008 , pp. 1187-1188
    • Devos, D.P.1    Reynaud, E.G.2
  • 117
    • 78751584657 scopus 로고    scopus 로고
    • A new fusion hypothesis for the origin of Eukarya: Better than previous ones, but probably also wrong
    • 2-s2.0-78751584657 10.1016/j.resmic.2010.10.005
    • Forterre P., A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong. Research in Microbiology 2011 162 1 77 91 2-s2.0-78751584657 10.1016/j.resmic.2010.10.005
    • (2011) Research in Microbiology , vol.162 , Issue.1 , pp. 77-91
    • Forterre, P.1
  • 118
    • 80053935206 scopus 로고    scopus 로고
    • Transitional forms between the three domains of life and evolutionary implications
    • 2-s2.0-80053935206 10.1098/rspb.2011.1581
    • Reynaud E. G., Devos D. P., Transitional forms between the three domains of life and evolutionary implications. Proceedings of the Royal Society B 2011 278 1723 3321 3328 2-s2.0-80053935206 10.1098/rspb.2011.1581
    • (2011) Proceedings of the Royal Society B , vol.278 , Issue.1723 , pp. 3321-3328
    • Reynaud, E.G.1    Devos, D.P.2
  • 119
    • 0034872743 scopus 로고    scopus 로고
    • Viral eukaryogenesis: Was the ancestor of the nucleus a complex DNA virus?
    • DOI 10.1007/s002390010215
    • Livingstone Bell P. J., Viral eukaryogenesis: was the ancestor of the nucleus a complex DNA virus? Journal of Molecular Evolution 2001 53 3 251 256 2-s2.0-0034872743 10.1007/s002390010215 (Pubitemid 32783800)
    • (2001) Journal of Molecular Evolution , vol.53 , Issue.3 , pp. 251-256
    • Livingstone Bell, P.J.1
  • 120
    • 0035346350 scopus 로고    scopus 로고
    • Poxviruses and the origin of the eukaryotic nucleus
    • 2-s2.0-0035346350
    • Takemura M., Poxviruses and the origin of the eukaryotic nucleus. Journal of Molecular Evolution 2001 52 5 419 425 2-s2.0-0035346350
    • (2001) Journal of Molecular Evolution , vol.52 , Issue.5 , pp. 419-425
    • Takemura, M.1
  • 121
    • 24744450331 scopus 로고    scopus 로고
    • The two ages of the RNA world, and the transition to the DNA world: A story of viruses and cells
    • DOI 10.1016/j.biochi.2005.03.015, PII S0300908405000921, Facets of the RNA World
    • Forterre P., The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie 2005 87 9-10 793 803 2-s2.0-24744450331 10.1016/j.biochi.2005.03.015 (Pubitemid 41297805)
    • (2005) Biochimie , vol.87 , Issue.9-10 , pp. 793-803
    • Forterre, P.1
  • 122
    • 33644859575 scopus 로고    scopus 로고
    • Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain
    • DOI 10.1073/pnas.0510333103
    • Forterre P., Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain. Proceedings of the National Academy of Sciences of the United States of America 2006 103 10 3669 3674 2-s2.0-33644859575 10.1073/pnas.0510333103 (Pubitemid 43376613)
    • (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.10 , pp. 3669-3674
    • Forterre, P.1
  • 123
    • 33747810433 scopus 로고    scopus 로고
    • Multiple secondary origins of the anaerobic lifestyle in eukaryotes
    • DOI 10.1098/rstb.2006.1844
    • Embley T. M., Multiple secondary origins of the anaerobic lifestyle in eukaryotes. Philosophical Transactions of the Royal Society B 2006 361 1470 1055 1067 2-s2.0-33747810433 10.1098/rstb.2006.1844 (Pubitemid 44858915)
    • (2006) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.361 , Issue.1470 , pp. 1055-1067
    • Embley, T.M.1
  • 125
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
    • DOI 10.1073/pnas.93.15.7749
    • Baldauf S. L., Palmer J. D., Doolittle W. F., The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proceedings of the National Academy of Sciences of the United States of America 1996 93 15 7749 7754 2-s2.0-0029819318 10.1073/pnas.93.15.7749 (Pubitemid 26277109)
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.15 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.D.2    Doolittle, W.F.3
  • 126
    • 0029976676 scopus 로고    scopus 로고
    • Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1α/Tu and 2/G
    • DOI 10.1016/0065-227X(96)84742-3
    • Hashimoto T., Hasegawa M., Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1 α /Tu and 2/G. Advances in Biophysics 1996 32 73 120 2-s2.0-0029976676 10.1016/0065-227X(96)84742-3 (Pubitemid 26196182)
    • (1996) Advances in Biophysics , vol.32 , pp. 73-120
    • Hashimoto, T.1    Hasegawa, M.2
  • 127
  • 128
    • 67651039738 scopus 로고    scopus 로고
    • The primary divisions of life: A phylogenomic approach employing composition-heterogeneous methods
    • 2-s2.0-67651039738 10.1098/rstb.2009.0034
    • Foster P. G., Cox C. J., Martin Embley T., The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philosophical Transactions of the Royal Society B 2009 364 1527 2197 2207 2-s2.0-67651039738 10.1098/rstb.2009.0034
    • (2009) Philosophical Transactions of the Royal Society B , vol.364 , Issue.1527 , pp. 2197-2207
    • Foster, P.G.1    Cox, C.J.2    Martin Embley, T.3
  • 130
    • 79955706693 scopus 로고    scopus 로고
    • An actin-based cytoskeleton in archaea
    • 2-s2.0-79955706693 10.1111/j.1365-2958.2011.07635.x
    • Ettema T. J. G., Lindås A.-C., Bernander R., An actin-based cytoskeleton in archaea. Molecular Microbiology 2011 80 4 1052 1061 2-s2.0-79955706693 10.1111/j.1365-2958.2011.07635.x
    • (2011) Molecular Microbiology , vol.80 , Issue.4 , pp. 1052-1061
    • Ettema, T.J.G.1    Lindås, A.-C.2    Bernander, R.3
  • 131
    • 67650641167 scopus 로고    scopus 로고
    • Cell division and the ESCRT complex: A surprise from the archaea
    • 2-s2.0-67650641167
    • Ettema T. J. G., Bernander R., Cell division and the ESCRT complex: a surprise from the archaea. Communicative and Integrative Biology 2009 2 2 86 88 2-s2.0-67650641167
    • (2009) Communicative and Integrative Biology , vol.2 , Issue.2 , pp. 86-88
    • Ettema, T.J.G.1    Bernander, R.2
  • 132
    • 80053598581 scopus 로고    scopus 로고
    • Genome sequence of an ammonia-oxidizing soil archaeon, "candidatus Nitrosoarchaeum koreensis" MY1
    • 2-s2.0-80053598581 10.1128/JB.05717-11
    • Kim B. K., Jung M.-Y., Yu D. S., Park S.-J., Oh T. K., Rhee S.-K., Kim J. F., Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1. Journal of Bacteriology 2011 193 19 5539 5540 2-s2.0-80053598581 10.1128/JB.05717-11
    • (2011) Journal of Bacteriology , vol.193 , Issue.19 , pp. 5539-5540
    • Kim, B.K.1    Jung, M.-Y.2    Yu, D.S.3    Park, S.-J.4    Oh, T.K.5    Rhee, S.-K.6    Kim, J.F.7
  • 133
    • 84870486180 scopus 로고    scopus 로고
    • The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: Insights into metabolic versatility and environmental adaptations
    • Spang A., Poehlein A., Offre P., The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environmental Microbiology 2012 14 3122 3145
    • (2012) Environmental Microbiology , vol.14 , pp. 3122-3145
    • Spang, A.1    Poehlein, A.2    Offre, P.3
  • 135
    • 84856659328 scopus 로고    scopus 로고
    • Untangling genomes from metagenomes: Revealing an uncultured class of marine euryarchaeota
    • 2-s2.0-84856659328 10.1126/science.1212665
    • Iverson V., Morris R. M., Frazar C. D., Berthiaume C. T., Morales R. L., Armbrust E. V., Untangling genomes from metagenomes: revealing an uncultured class of marine euryarchaeota. Science 2012 335 6068 587 590 2-s2.0-84856659328 10.1126/science.1212665
    • (2012) Science , vol.335 , Issue.6068 , pp. 587-590
    • Iverson, V.1    Morris, R.M.2    Frazar, C.D.3    Berthiaume, C.T.4    Morales, R.L.5    Armbrust, E.V.6
  • 136
    • 79952050667 scopus 로고    scopus 로고
    • Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
    • 2-s2.0-79952050667 10.1371/journal.pone.0016626 e16626
    • Blainey P. C., Mosier A. C., Potanina A., Francis C. A., Quake S. R., Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS ONE 2011 6 2 2-s2.0-79952050667 10.1371/journal.pone.0016626 e16626
    • (2011) PLoS ONE , vol.6 , Issue.2
    • Blainey, P.C.1    Mosier, A.C.2    Potanina, A.3    Francis, C.A.4    Quake, S.R.5


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