-
1
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of DNA repair systems
-
Aravind L., Walker D.R., and Koonin E. Conserved domains in DNA repair proteins and evolution of DNA repair systems. Nucleic Acid Res. 2 (1999) 1223-1242
-
(1999)
Nucleic Acid Res.
, vol.2
, pp. 1223-1242
-
-
Aravind, L.1
Walker, D.R.2
Koonin, E.3
-
2
-
-
25144485401
-
Nanoarchaea: representatives of a novel archaeal phylum or a fast evolving euryarchaeal lineage related to Thermococcales?
-
Brochier C., Gribaldo S., Zivanovic Y., Confalonieri F., and Forterre P. Nanoarchaea: representatives of a novel archaeal phylum or a fast evolving euryarchaeal lineage related to Thermococcales?. Genome Biol. 6 R42 (2005) 1-10
-
(2005)
Genome Biol.
, vol.6
, Issue.R42
, pp. 1-10
-
-
Brochier, C.1
Gribaldo, S.2
Zivanovic, Y.3
Confalonieri, F.4
Forterre, P.5
-
3
-
-
0028941917
-
Root of the universal tree of life based on ancient aminoacyl-tRNA synthase gene duplications
-
Brown J.R., and Doolittle W.F. Root of the universal tree of life based on ancient aminoacyl-tRNA synthase gene duplications. Proc. Natl. Acad. Sci.U. S. A. 92 (1995) 2441-2445
-
(1995)
Proc. Natl. Acad. Sci.U. S. A.
, vol.92
, pp. 2441-2445
-
-
Brown, J.R.1
Doolittle, W.F.2
-
4
-
-
0030788417
-
Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthases
-
Brown J.R., Roob F.T., Weiss R., and Doolittle W.F. Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthases. J. Mol. Evol. 45 (1997) 9-16
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 9-16
-
-
Brown, J.R.1
Roob, F.T.2
Weiss, R.3
Doolittle, W.F.4
-
5
-
-
0036155782
-
The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
-
Cavalier-Smith T. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol. 52 (2002) 7-76
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 7-76
-
-
Cavalier-Smith, T.1
-
6
-
-
0018239377
-
Implications of RNA-RNA splicing in evolution of eukaryotic cells
-
Darnell Jr. J.E. Implications of RNA-RNA splicing in evolution of eukaryotic cells. Science 202 (1978) 1250-1260
-
(1978)
Science
, vol.202
, pp. 1250-1260
-
-
Darnell Jr., J.E.1
-
8
-
-
0034736518
-
The late stage of genetic code structuring took place at a high temperature
-
Di Giulio M. The late stage of genetic code structuring took place at a high temperature. Gene 261 (2000) 189-195
-
(2000)
Gene
, vol.261
, pp. 189-195
-
-
Di Giulio, M.1
-
9
-
-
0034615794
-
The universal ancestor lived in a thermophilic or hyperthermophilic environment
-
Di Giulio M. The universal ancestor lived in a thermophilic or hyperthermophilic environment. J. Theor. Biol. 203 (2000) 203-213
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 203-213
-
-
Di Giulio, M.1
-
10
-
-
0036841366
-
Gln molecular fossils or not?
-
Gln molecular fossils or not?. J. Mol. Evol. 55 (2002) 616-622
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 616-622
-
-
Di Giulio, M.1
-
11
-
-
0037424668
-
The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence
-
Di Giulio M. The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence. J. Theor. Biol. 221 (2003) 425-436
-
(2003)
J. Theor. Biol.
, vol.221
, pp. 425-436
-
-
Di Giulio, M.1
-
12
-
-
0142072054
-
The early phases of genetic code origin: conjectures on the evolution of coded catalysis
-
Di Giulio M. The early phases of genetic code origin: conjectures on the evolution of coded catalysis. Orig. Life Evol. Biosph. 33 (2003) 479-489
-
(2003)
Orig. Life Evol. Biosph.
, vol.33
, pp. 479-489
-
-
Di Giulio, M.1
-
13
-
-
0346104820
-
The universal ancestor and the ancestor of Bacteria were hyperthermophiles
-
Di Giulio M. The universal ancestor and the ancestor of Bacteria were hyperthermophiles. J. Mol. Evol. 57 (2003) 721-730
-
(2003)
J. Mol. Evol.
, vol.57
, pp. 721-730
-
-
Di Giulio, M.1
-
14
-
-
14744290820
-
The ocean abysses witnessed the origin of the genetic code
-
Di Giulio M. The ocean abysses witnessed the origin of the genetic code. Gene 346 (2005) 7-12
-
(2005)
Gene
, vol.346
, pp. 7-12
-
-
Di Giulio, M.1
-
15
-
-
33646248891
-
The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the Last Universal Common Ancestor (LUCA)
-
Di Giulio M. The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the Last Universal Common Ancestor (LUCA). J. Theor. Biol. 240 (2006) 343-352
-
(2006)
J. Theor. Biol.
, vol.240
, pp. 343-352
-
-
Di Giulio, M.1
-
16
-
-
33746903166
-
Nanoarchaeum equitans is a living fossil
-
Di Giulio M. Nanoarchaeum equitans is a living fossil. J. Theor. Biol. 242 (2006) 257-260
-
(2006)
J. Theor. Biol.
, vol.242
, pp. 257-260
-
-
Di Giulio, M.1
-
17
-
-
34547642637
-
Genes in pieces: were they ever together?
-
Doolittle W.F. Genes in pieces: were they ever together?. Nature 272 (1978) 581-582
-
(1978)
Nature
, vol.272
, pp. 581-582
-
-
Doolittle, W.F.1
-
18
-
-
0000273689
-
Toward defining the course of evolution: minimum change for a specific tree topology
-
Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20 (1971) 204-216
-
(1971)
Syst. Zool.
, vol.20
, pp. 204-216
-
-
Fitch, W.M.1
-
19
-
-
0028989816
-
Thermoreduction, a hypothesis for the origin of prokaryotes
-
Forterre P. Thermoreduction, a hypothesis for the origin of prokaryotes. CR Acad. Sci. III 318 (1995) 415-422
-
(1995)
CR Acad. Sci. III
, vol.318
, pp. 415-422
-
-
Forterre, P.1
-
20
-
-
24744450331
-
The two ages of the RNA world, and the transition of the DNA world: a story of viruses and cells
-
Forterre P. The two ages of the RNA world, and the transition of the DNA world: a story of viruses and cells. Biochimie 87 (2005) 793-803
-
(2005)
Biochimie
, vol.87
, pp. 793-803
-
-
Forterre, P.1
-
21
-
-
0033214077
-
Where is the root of the universal tree of life?
-
Forterre P., and Philippe H. Where is the root of the universal tree of life?. Bioessays 21 (1999) 871-879
-
(1999)
Bioessays
, vol.21
, pp. 871-879
-
-
Forterre, P.1
Philippe, H.2
-
22
-
-
0018263844
-
Why genes in pieces?
-
Gilbert W. Why genes in pieces?. Nature 271 (1978) 501
-
(1978)
Nature
, vol.271
, pp. 501
-
-
Gilbert, W.1
-
24
-
-
0032867427
-
On the origin of operons and their possible role in evolution toward thermophily
-
Glansdorff N. On the origin of operons and their possible role in evolution toward thermophily. J. Mol. Evol. 49 (1999) 432-438
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 432-438
-
-
Glansdorff, N.1
-
25
-
-
0033752775
-
About the last common ancestor, the universal life-tree and lateral gene transfer: a reappraisal
-
Glansdorff N. About the last common ancestor, the universal life-tree and lateral gene transfer: a reappraisal. Mol. Microbiol. 38 (2000) 177-185
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 177-185
-
-
Glansdorff, N.1
-
26
-
-
0024722874
-
+-ATPase: implications for the origin of eukaryotes
-
+-ATPase: implications for the origin of eukaryotes. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 6661-6665
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 6661-6665
-
-
Gorgaten, J.P.1
Kibak, H.2
Dittrich, P.3
Taiz, L.4
Bouman, E.J.5
Bowman, B.J.6
Manoloson, M.F.7
Poole, R.J.8
Date, T.9
Oshima, T.10
Konishi, J.11
Denda, K.12
Yoshida, M.13
-
27
-
-
0031735878
-
The root of the universal tree of life inferred from ancient duplicated genes encoding components of the protein-targeting machinery
-
Gribaldo S., and Cammarano P. The root of the universal tree of life inferred from ancient duplicated genes encoding components of the protein-targeting machinery. J. Mol. Evol. 47 (1998) 508-516
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 508-516
-
-
Gribaldo, S.1
Cammarano, P.2
-
28
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber H., Hohn M.J., Rachel R., Fuchs T., Wimmer V.C., and Stetter K.O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417 (2002) 63-67
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
29
-
-
0024358140
-
Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
-
Iwabe N., Kuma K., Hasegawa M., Osawa S., and Miyata T. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 9255-9359
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 9255-9359
-
-
Iwabe, N.1
Kuma, K.2
Hasegawa, M.3
Osawa, S.4
Miyata, T.5
-
32
-
-
0032824425
-
The evolutionary history of carbamoyltransferases; a complex set of paralogous genes was already present in the last universal common ancestor
-
Labedan B., Boyen A., Baetens M., Charlier D., Chen P., Durbeco V., Glansdorff N., Herve G., Legrain C., Liang Z., Purcarea C., Roovers M., Sanchez R., Toong T.L., Vande Casteele M., van Vliet F., Xu Y., and Zhang Y.F. The evolutionary history of carbamoyltransferases; a complex set of paralogous genes was already present in the last universal common ancestor. J. Mol. Evol. 49 (1999) 461-473
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 461-473
-
-
Labedan, B.1
Boyen, A.2
Baetens, M.3
Charlier, D.4
Chen, P.5
Durbeco, V.6
Glansdorff, N.7
Herve, G.8
Legrain, C.9
Liang, Z.10
Purcarea, C.11
Roovers, M.12
Sanchez, R.13
Toong, T.L.14
Vande Casteele, M.15
van Vliet, F.16
Xu, Y.17
Zhang, Y.F.18
-
33
-
-
0029815789
-
Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life
-
Lawson F.S., Charlebois R.L., and Dillon J.A. Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life. Mol. Biol. Evol. 13 (1996) 970-977
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 970-977
-
-
Lawson, F.S.1
Charlebois, R.L.2
Dillon, J.A.3
-
34
-
-
0032825223
-
The root of the tree of life in the light of the covarion model
-
Lopez P., Forterre P., and Philippe H. The root of the tree of life in the light of the covarion model. J. Mol. Evol. 49 (1999) 496-508
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 496-508
-
-
Lopez, P.1
Forterre, P.2
Philippe, H.3
-
35
-
-
25144488272
-
Evolutionary and functional genomics of the Archaea
-
Makarova K.S., and Koonin E.V. Evolutionary and functional genomics of the Archaea. Curr. Opin. Microbiol. 8 (2005) 586-594
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 586-594
-
-
Makarova, K.S.1
Koonin, E.V.2
-
36
-
-
0029789824
-
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
-
Mushegian A.R., and Koonin E.V. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 10268-10273
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 10268-10273
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
37
-
-
0031939779
-
A bacterial RNA that functions as both a tRNA and an mRNA
-
Muto A., Ushida C., and Himeno H. A bacterial RNA that functions as both a tRNA and an mRNA. Trends Biochem. Sci. 23 (1998) 25-29
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 25-29
-
-
Muto, A.1
Ushida, C.2
Himeno, H.3
-
38
-
-
0032785122
-
The nature of the last universal common ancestor
-
Penny D., and Poole A. The nature of the last universal common ancestor. Curr. Opin. Genet. Dev. 79 (1999) 672-677
-
(1999)
Curr. Opin. Genet. Dev.
, vol.79
, pp. 672-677
-
-
Penny, D.1
Poole, A.2
-
40
-
-
19544385261
-
Modern mRNA proofreading and repair: clues that the Last Universal Common Ancestor possessed an RNA genome
-
Poole A.M., and Logan D.T. Modern mRNA proofreading and repair: clues that the Last Universal Common Ancestor possessed an RNA genome. Mol. Biol. Evol. 22 (2005) 1444-1455
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1444-1455
-
-
Poole, A.M.1
Logan, D.T.2
-
41
-
-
13444251251
-
Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′-and 3′-halves
-
Randau L., Munch R., Hohn M., Jahn D., and Soll D. Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′-and 3′-halves. Nature 433 (2005) 537-541
-
(2005)
Nature
, vol.433
, pp. 537-541
-
-
Randau, L.1
Munch, R.2
Hohn, M.3
Jahn, D.4
Soll, D.5
-
42
-
-
19444384556
-
The complete set of tRNA species in Nanoarchaeum equitans
-
Randau L., Pearson M., and Soll D. The complete set of tRNA species in Nanoarchaeum equitans. FEBS Lett. 579 (2005) 6017-6022
-
(2005)
FEBS Lett.
, vol.579
, pp. 6017-6022
-
-
Randau, L.1
Pearson, M.2
Soll, D.3
-
43
-
-
0016284976
-
On the origin of prokaryotes
-
Reanny D.C. On the origin of prokaryotes. J. Theor. Biol. 48 (1974) 243-251
-
(1974)
J. Theor. Biol.
, vol.48
, pp. 243-251
-
-
Reanny, D.C.1
-
44
-
-
20144380970
-
RNA-dependent cysteine biosynthesis in Archaea
-
Sauerwald A., Zhu W., Major T.A., Roy H., Palioura S., Jahn D., Whitman W.B., Yates III J.R., Ibba M., and Soll D. RNA-dependent cysteine biosynthesis in Archaea. Science 307 (2005) 1969-1972
-
(2005)
Science
, vol.307
, pp. 1969-1972
-
-
Sauerwald, A.1
Zhu, W.2
Major, T.A.3
Roy, H.4
Palioura, S.5
Jahn, D.6
Whitman, W.B.7
Yates III, J.R.8
Ibba, M.9
Soll, D.10
-
45
-
-
0346595188
-
Origin of eukaryotic introns: a hypothesis, based on codon distribution statistics in genes and its implications
-
Senapathy P. Origin of eukaryotic introns: a hypothesis, based on codon distribution statistics in genes and its implications. Proc. Natl. Acad. Sci. U. S. A. 83 (1986) 2133-2137
-
(1986)
Proc. Natl. Acad. Sci. U. S. A.
, vol.83
, pp. 2133-2137
-
-
Senapathy, P.1
-
46
-
-
2942597865
-
Anticodon and wobble evolution
-
Tong K.L., and Wong J.T. Anticodon and wobble evolution. Gene 333 (2004) 169-177
-
(2004)
Gene
, vol.333
, pp. 169-177
-
-
Tong, K.L.1
Wong, J.T.2
-
47
-
-
0024254814
-
Before enzymes and template: theory of surface metabolism
-
Wachtershauser G. Before enzymes and template: theory of surface metabolism. Microbiol. Rev. 52 (1988) 452-484
-
(1988)
Microbiol. Rev.
, vol.52
, pp. 452-484
-
-
Wachtershauser, G.1
-
48
-
-
0242300069
-
The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism
-
Waters, et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 12984-12988
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 12984-12988
-
-
Waters1
-
50
-
-
0001155613
-
A co-evolution theory of the genetic code
-
Wong J.T. A co-evolution theory of the genetic code. Proc. Natl. Acad. Sci. U.S.A. 72 (1975) 1909-1912
-
(1975)
Proc. Natl. Acad. Sci. U.S.A.
, vol.72
, pp. 1909-1912
-
-
Wong, J.T.1
-
51
-
-
0001155614
-
The evolution of a universal genetic code
-
Wong J.T. The evolution of a universal genetic code. Proc. Natl. Acad. Sci. U.S.A. 73 (1976) 2336-2340
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 2336-2340
-
-
Wong, J.T.1
-
52
-
-
17844405021
-
Coevolution theory of the genetic code at age thirty
-
Wong J.T. Coevolution theory of the genetic code at age thirty. BioEssays 27 (2005) 416-425
-
(2005)
BioEssays
, vol.27
, pp. 416-425
-
-
Wong, J.T.1
-
53
-
-
0037498150
-
Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life
-
Xue H., Tong K.L., Mark C., Grosjean M., and Wong J.T. Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life. Gene 22 (2003) 59-66
-
(2003)
Gene
, vol.22
, pp. 59-66
-
-
Xue, H.1
Tong, K.L.2
Mark, C.3
Grosjean, M.4
Wong, J.T.5
-
54
-
-
26844542163
-
Congruence of evidence for Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes
-
Xue H., Ng S.K., Tong K.L., and Wong J.T. Congruence of evidence for Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes. Gene 360 (2005) 120-130
-
(2005)
Gene
, vol.360
, pp. 120-130
-
-
Xue, H.1
Ng, S.K.2
Tong, K.L.3
Wong, J.T.4
-
56
-
-
0033562579
-
Comparative sequence analysis of tmRNA
-
Zwieb C., Wower I., and Wower J. Comparative sequence analysis of tmRNA. Nucleic Acid. Res. 27 (1999) 2063-2071
-
(1999)
Nucleic Acid. Res.
, vol.27
, pp. 2063-2071
-
-
Zwieb, C.1
Wower, I.2
Wower, J.3
|