-
1
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA et al. (2008). The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
Edwards, R.A.6
-
2
-
-
8044237106
-
Studies upon the methane-producing bacteria
-
Barker HA. (1936). Studies upon the methane-producing bacteria. Arch Mikrobiol 7: 420-438.
-
(1936)
Arch Mikrobiol
, vol.7
, pp. 420-438
-
-
Barker, H.A.1
-
3
-
-
26944486178
-
Late Archean to Early Paleoproterozoic global tectonics, environmental change and the rise of atmospheric oxygen
-
DOI 10.1016/j.epsl.2005.06.062, PII S0012821X05004401
-
Barley ME, Bekker A, Krapez B. (2005). Late Archean to early Paleoproterozoic global tectonics, environmental change and the rise of atmospheric oxygen. Earth Planet Sci Lett 238: 156-171. (Pubitemid 41478691)
-
(2005)
Earth and Planetary Science Letters
, vol.238
, Issue.1-2
, pp. 156-171
-
-
Barley, M.E.1
Bekker, A.2
Krapez, B.3
-
4
-
-
0028343555
-
Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
-
Barns SM, Fundyga RE, Jeffries MW, Pace NR. (1994). Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc Natl Acad Sci USA 91: 1609-1613. (Pubitemid 24080254)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.5
, pp. 1609-1613
-
-
Barns, S.M.1
Fundyga, R.E.2
Jeffries, M.W.3
Pace, N.R.4
-
5
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
DOI 10.1073/pnas.93.17.9188
-
Barns SM, Delwiche CF, Palmer JD, Pace NR. (1996). Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci USA 93: 9188-9193. (Pubitemid 26282757)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.17
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
6
-
-
0344406194
-
In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes
-
DOI 10.1128/AEM.69.3.1748-1758.2003
-
Behrens S, Rühland C, Inácio J, Huber H, Fonseca A, Spencer-Martins I et al. (2003). In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligo-nucleotide probes. Appl Environ Microbiol 69: 1748-1758. (Pubitemid 36314318)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.3
, pp. 1748-1758
-
-
Behrens, S.1
Ruhland, C.2
Inacio, J.3
Huber, H.4
Fonseca, A.5
Spencer-Martins, I.6
Fuchs, B.M.7
Amann, R.8
-
7
-
-
0346457225
-
Dating the rise of atmospheric oxygen
-
DOI 10.1038/nature02260
-
Bekker A, Holland HD, Wang P-L, Rumble D III, Stein HJ, Hannah JL et al. (2004). Dating the rise of atmospheric oxygen. Nature 427: 117-120. (Pubitemid 38094946)
-
(2004)
Nature
, vol.427
, Issue.6970
, pp. 117-120
-
-
Bekker, A.1
Holland, H.D.2
Wang, P.-L.3
Rumble III, D.4
Stein, H.J.5
Hannah, J.L.6
Coetzee, L.L.7
Beukes, N.J.8
-
8
-
-
37249052742
-
A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
-
DOI 10.1126/science.1149976
-
Berg IA, Kockelkorn D, Buckel W, Fuchs G. (2007). A 3-hydroxypropionate/ 4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science 318: 1782-1786. (Pubitemid 350274390)
-
(2007)
Science
, vol.318
, Issue.5857
, pp. 1782-1786
-
-
Berg, I.A.1
Kockelkorn, D.2
Buckel, W.3
Fuchs, G.4
-
9
-
-
77952888917
-
Autotrophic carbon fixation in archaea
-
Berg IA, Kockelkorn D, Ramos-Vera WH, Say RF, Zarzycki J, Hügler M et al. (2010). Autotrophic carbon fixation in archaea. Nat Rev Microbiol 8: 447-460.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 447-460
-
-
Berg, I.A.1
Kockelkorn, D.2
Ramos-Vera, W.H.3
Say, R.F.4
Zarzycki, J.5
-
10
-
-
78649686001
-
FtsZ-less cell division in archaea and bacteria
-
Bernande R, Ettema TJ. (2010). FtsZ-less cell division in archaea and bacteria. Curr Opin Microbiol 13: 747-752.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 747-752
-
-
Bernande, R.1
Ettema, T.J.2
-
11
-
-
80054744476
-
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics
-
Bertin PN, Heinrich-Salmeron A, Pelletier E, Goulhen-Chollet F, Arsène-Ploetze F, Gallien S et al. (2011). Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics. ISME J 11: 1735-1747.
-
(2011)
ISME J
, vol.11
, pp. 1735-1747
-
-
Bertin, P.N.1
Heinrich-Salmeron, A.2
Pelletier, E.3
Goulhen-Chollet, F.4
Arsène-Ploetze, F.5
Gallien, S.6
-
12
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR. (2011). Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6: e16626.
-
(2011)
PLoS One
, vol.6
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Francis, C.A.4
Quake, S.R.5
-
13
-
-
70449589609
-
Not so old Archaea-the antiquity of biogeochemical processes in the archaeal domain of life
-
Blank CE. (2009). Not so old Archaea-the antiquity of biogeochemical processes in the archaeal domain of life. Geobiology 5: 495-514.
-
(2009)
Geobiology
, vol.5
, pp. 495-514
-
-
Blank, C.E.1
-
14
-
-
35448932094
-
Isolation, characterization, and ecology of sulfur-respiring Crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park
-
DOI 10.1128/AEM.01321-07
-
Boyd ES, Jackson RA, Encarnacion G, Zahn JA, Beard T, Leavitt WD et al. (2007). Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park. Appl Environ Microbiol 73: 6669-6677. (Pubitemid 47623728)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.20
, pp. 6669-6677
-
-
Boyd, E.S.1
Jackson, R.A.2
Encarnacion, G.3
Zahn, J.A.4
Beard, T.5
Leavitt, W.D.6
Pi, Y.7
Zhang, C.L.8
Pearson, A.9
Geesey, G.G.10
-
15
-
-
25144485401
-
Nanoarchaea: Representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?
-
Brochier C, Gribaldo S, Zivanovic Y, Confalonieri F, Forterre P. (2005). Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? Genome Biol 6: R42.
-
(2005)
Genome Biol
, vol.6
-
-
Brochier, C.1
Gribaldo, S.2
Zivanovic, Y.3
Confalonieri, F.4
Forterre, P.5
-
16
-
-
39149118031
-
Mesophilic Crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
-
Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P. (2008). Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 252.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 252
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
Forterre, P.4
-
17
-
-
0015275944
-
Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature
-
Brock TD, Brock KM, Belly RT, Weiss RL. (1972). Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch Mikrobiol 84: 54-68.
-
(1972)
Arch Mikrobiol
, vol.84
, pp. 54-68
-
-
Brock, T.D.1
Brock, K.M.2
Belly, R.T.3
Weiss, R.L.4
-
18
-
-
38549131184
-
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
-
DOI 10.1111/j.1462-2920.2007.01506.x
-
de la Torre JR, Walker CB, Ingalls AE, Konneke M, Stahl DA. (2008). Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol 10: 810-818. (Pubitemid 351160920)
-
(2008)
Environmental Microbiology
, vol.10
, Issue.3
, pp. 810-818
-
-
De La Torre, J.R.1
Walker, C.B.2
Ingalls, A.E.3
Konneke, M.4
Stahl, D.A.5
-
19
-
-
0037059062
-
Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution
-
DOI 10.1073/pnas.212640899
-
Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O. (2002). Catalysis at a dinuclear [CuSMo(O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution. Proc Natl Acad Sci USA 99: 15971-15976. (Pubitemid 35462733)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.25
, pp. 15971-15976
-
-
Dobbek, H.1
Gremer, L.2
Kiefersauer, R.3
Huber, R.4
Meyer, O.5
-
20
-
-
45849112155
-
A korarchaeal genome reveals insights into the evolution of the Archaea
-
DOI 10.1073/pnas.0801980105
-
Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L et al. (2008). A korarchaeal genome reveals new insights into the evolution of the Archaea. Proc Natl Acad Sci USA 105: 8102-8107. (Pubitemid 351904715)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.23
, pp. 8102-8107
-
-
Elkins, J.G.1
Podar, M.2
Graham, D.E.3
Makarova, K.S.4
Wolf, Y.5
Randau, L.6
Hedlund, B.P.7
Brochier-Armanet, C.8
Kunin, V.9
Anderson, I.10
Lapidus, A.11
Goltsman, E.12
Barry, K.13
Koonin, E.V.14
Hugenholtz, P.15
Kyrpides, N.16
Wanner, G.17
Richardson, P.18
Keller, M.19
Stetter, K.O.20
more..
-
21
-
-
2342526669
-
Ancestral hemoglobins in Archaea
-
DOI 10.1073/pnas.0308657101
-
Freitas TA, Hou S, Dioum EM, Saito JA, Newhouse J, Gonzalez G. (2004). Ancestral hemoglobins in Archaea. Proc Natl Acad Sci USA 101: 6675-6680. (Pubitemid 38586033)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.17
, pp. 6675-6680
-
-
Freitas, T.A.K.1
Hou, S.2
Dioum, E.M.3
Saito, J.A.4
Newhouse, J.5
Gonzalez, G.6
Gilles-Gonzalez, M.-A.7
Alam, M.8
-
22
-
-
10444268100
-
Globin-coupled sensors, protoglobins, and the last universal common ancestor
-
DOI 10.1016/j.jinorgbio.2004.10.024, PII S0162013404003319, Heme-Diatomic Interactions, Part 1
-
Freitas TA, Saito JA, Hou S, Alam M. (2005). Globin-coupled sensors, protoglobins, and the last universal common ancestor. J Inorg Biochem 99: 23-33. (Pubitemid 39642969)
-
(2005)
Journal of Inorganic Biochemistry
, vol.99
, Issue.1
, pp. 23-33
-
-
Freitas, T.A.K.1
Saito, J.A.2
Hou, S.3
Alam, M.4
-
23
-
-
57349191940
-
Single cell identification by fluorescence in situ hybridization
-
3rd Edn, Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds). ASM Press: Washington, DC
-
Fuchs BM, Pernthaler J, Amann R. (2007). Single cell identification by fluorescence in situ hybridization. In: Methods for General and Molecular Microbiology, 3rd Edn, Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds). ASM Press: Washington, DC, pp 886-896.
-
(2007)
Methods for General and Molecular Microbiology
, pp. 886-896
-
-
Fuchs, B.M.1
Pernthaler, J.2
Amann, R.3
-
24
-
-
0344651048
-
The red discoloration of cured codfish
-
Harrison FC, Kennedy ME. (1922). The red discoloration of cured codfish. Trans Roy Soc Can 16: 101-152.
-
(1922)
Trans Roy Soc Can
, vol.16
, pp. 101-152
-
-
Harrison, F.C.1
Kennedy, M.E.2
-
25
-
-
77953529866
-
Glucose 6-phosphate accumulation in myco-bacteria: Implications for a novel F420-dependent anti-oxidant defense system
-
Hasan MR, Rahman M, Jaques S, Purwantini E, Daniels LJ. (2010). Glucose 6-phosphate accumulation in myco-bacteria: implications for a novel F420-dependent anti-oxidant defense system. Biol Chem 25: 19135-19144.
-
(2010)
Biol Chem
, vol.25
, pp. 19135-19144
-
-
Hasan, M.R.1
Rahman, M.2
Jaques, S.3
Purwantini, E.4
Daniels, L.J.5
-
26
-
-
41149153310
-
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring
-
DOI 10.1073/pnas.0708857105
-
Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H et al. (2008). Moderately thermo-philic ammonia-oxidizing crenarchaeote from a hot spring. Proc Natl Acad Sci USA 105: 2134-2139. (Pubitemid 351439477)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 2134-2139
-
-
Hatzenpichler, R.1
Lebedeva, E.V.2
Spieck, E.3
Stoecker, K.4
Richter, A.5
Daims, H.6
Wagner, M.7
-
27
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
DOI 10.1038/417063a
-
Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. (2002). A new phylum of Archaea represented by a nanosized hyperthermophilic sym-biont. Nature 417: 63-67. (Pubitemid 34498815)
-
(2002)
Nature
, vol.417
, Issue.6884
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
28
-
-
33646262107
-
Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
-
Ingalls AE, Shah SR, Hansman RL, Aluwihare LI, Santos GM, Druffel ER et al. (2006). Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. Proc Natl Acad Sci USA 103: 6442-6447.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6442-6447
-
-
Ingalls, A.E.1
Shah, S.R.2
Hansman, R.L.3
Aluwihare, L.I.4
Santos, G.M.5
Druffel, E.R.6
-
29
-
-
33644822529
-
On the energetics of chemolithotro-phy in nonequilibrium systems: Case studies of geother-mal springs in Yellowstone National Park
-
Inskeep WP, Ackerman GG, Taylor WP, Korf S, Kozubal MA, Macur RE. (2005). On the energetics of chemolithotro-phy in nonequilibrium systems: case studies of geother-mal springs in Yellowstone National Park. Geobiol 3: 297-320.
-
(2005)
Geobiol
, vol.3
, pp. 297-320
-
-
Inskeep, W.P.1
Ackerman, G.G.2
Taylor, W.P.3
Korf, S.4
Kozubal, M.A.5
MacUr, R.E.6
-
30
-
-
78149423315
-
Metagenomes from high-temperature chemotrophic systems reveal geochem-ical controls on microbial community structure and function
-
Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH et al. (2010). Metagenomes from high-temperature chemotrophic systems reveal geochem-ical controls on microbial community structure and function. PLoS One 5: e9773.
-
(2010)
PLoS One
, vol.5
-
-
Inskeep, W.P.1
Rusch, D.B.2
Jay, Z.J.3
Herrgard, M.J.4
Kozubal, M.A.5
Richardson, T.H.6
-
31
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM. (1992). The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-282.
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
32
-
-
33846476676
-
Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
-
DOI 10.1038/nrmicro1595, PII NRMICRO1595
-
King GM, Weber CF. (2007). Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat Rev Microbiol 2: 107-118. (Pubitemid 46151869)
-
(2007)
Nature Reviews Microbiology
, vol.5
, Issue.2
, pp. 107-118
-
-
King, G.M.1
Weber, C.F.2
-
33
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
DOI 10.1038/nature03911, PII N03911
-
Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA. (2005). Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546. (Pubitemid 41613550)
-
(2005)
Nature
, vol.437
, Issue.7058
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
34
-
-
39649108861
-
Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park
-
DOI 10.1128/AEM.01200-07
-
Kozubal M, Macur RE, Korf S, Taylor WP, Ackerman GG, Nagy A et al. (2008). Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park. Appl Environ Microbiol 74: 942-949. (Pubitemid 351287064)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.4
, pp. 942-949
-
-
Kozubal, M.1
Macur, R.E.2
Korf, S.3
Taylor, W.P.4
Ackerman, G.G.5
Nagy, A.6
Inskeep, W.P.7
-
35
-
-
79953193433
-
Terminal oxidase diversity and function in 'Metallo-sphaera yellowstonensis': Gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the Sulfolobales
-
Kozubal MA, Dlakic M, Macur RE, Inskeep WP. (2011). Terminal oxidase diversity and function in 'Metallo-sphaera yellowstonensis': gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the Sulfolobales. Appl Environ Microbiol 77: 1844-1853.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1844-1853
-
-
Kozubal, M.A.1
Dlakic, M.2
MacUr, R.E.3
Inskeep, W.P.4
-
36
-
-
84871276132
-
Microbial iron cycling in acidic geothermal springs of Yellowstone National Park: Integrating molecular surveys, geochemical processes and isolation of novel Fe-active microorganisms
-
in press
-
Kozubal MA, Macur RE, Jay ZJ, Beam JP, Malfatti SA, Tringe SG et al. (2012). Microbial iron cycling in acidic geothermal springs of Yellowstone National Park: Integrating molecular surveys, geochemical processes and isolation of novel Fe-active microorganisms. Front Microbio 3: 109. (in press).
-
(2012)
Front Microbio
, vol.3
, pp. 109
-
-
Kozubal, M.A.1
MacUr, R.E.2
Jay, Z.J.3
Beam, J.P.4
Malfatti, S.A.5
Tringe, S.G.6
-
37
-
-
79960554003
-
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
-
Makarova KS, Aravind L, Wolf YI, Koonin EV. (2011). Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol Direct 6: 38.
-
(2011)
Biol Direct
, vol.6
, pp. 38
-
-
Makarova, K.S.1
Aravind, L.2
Wolf, Y.I.3
Koonin, E.V.4
-
38
-
-
78751566447
-
Isoprenoid biosynthesis in Archaea-biochemical and evolutionary implications
-
Matsumi R, Atomi H, Driessen AJ, van der Oost J. (2011). Isoprenoid biosynthesis in Archaea-biochemical and evolutionary implications. Res Microbiol 1: 39-52.
-
(2011)
Res Microbiol
, vol.1
, pp. 39-52
-
-
Matsumi, R.1
Atomi, H.2
Driessen, A.J.3
Van Der Oost, J.4
-
39
-
-
33644829921
-
Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA
-
DOI 10.1111/j.1472-4669.2005.00052.x
-
Meyer-Dombard DR, Shock EL, Amend JP. (2005). Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA. Geobiol 3: 211-227. (Pubitemid 43942999)
-
(2005)
Geobiology
, vol.3
, Issue.3
, pp. 211-227
-
-
Meyer-Dombard, D.R.1
Shock, E.L.2
Amend, J.P.3
-
40
-
-
0030027631
-
Globins in nonvertebrate species: Dispersal by horizontal gene transfer and evolution of the structure-function relationships
-
Moens L, Vanfleteren J, Van de Peer Y, Peeters K, Kapp O, Czeluzniak J et al. (1996). Globins in nonvertebrate species: dispersal by horizontal gene transfer and evolution of the structure-function relationships. Mol Biol Evol 13: 324-333. (Pubitemid 26035315)
-
(1996)
Molecular Biology and Evolution
, vol.13
, Issue.2
, pp. 324-333
-
-
Moens, L.1
Vanfleteren, J.2
Van De Peer, Y.3
Peeters, K.4
Kapp, O.5
Czeluzniak, J.6
Goodman, M.7
Blaxter, M.8
Vinogradov, S.9
-
41
-
-
77955245722
-
First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat
-
Muller F, Brissac T, Le Bris N, Felbeck H, Gros O. (2010). First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat. Environ Microbiol 8: 2371-2383.
-
(2010)
Environ Microbiol
, vol.8
, pp. 2371-2383
-
-
Muller, F.1
Brissac, T.2
Le Bris, N.3
Felbeck, H.4
Gros, O.5
-
42
-
-
38949170616
-
Archaeal protoglobin structure indicates new ligand diffusion paths and modulation of haem-reactivity
-
DOI 10.1038/sj.embor.7401153, PII 7401153
-
Nardini M, Pesce A, Thijs L, Saito JA, Dewilde S, Alam M et al. (2008). Archaeal protoglobin structure indicates new ligand diffusion paths and modulation of haem-reactivity. EMBO Rep 9: 157-163. (Pubitemid 351223453)
-
(2008)
EMBO Reports
, vol.9
, Issue.2
, pp. 157-163
-
-
Nardini, M.1
Pesce, A.2
Thijs, L.3
Saito, J.A.4
Dewilde, S.5
Alam, M.6
Ascenzi, P.7
Coletta, M.8
Ciaccio, C.9
Moens, L.10
Bolognesi, M.11
-
44
-
-
33644771531
-
Identification and characterization of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii
-
DOI 10.1128/JB.188.5.2014-2019.2006
-
Nishimasu H, Fushinobu S, Shoun H, Wakagi T. (2006). Identification and characterization of an ATP-depen-dent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J Bacteriol 5: 2014-2019. (Pubitemid 43346881)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.5
, pp. 2014-2019
-
-
Nishimasu, H.1
Fushinobu, S.2
Shoun, H.3
Wakagi, T.4
-
45
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
DOI 10.1093/nar/gki866
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M et al. (2005). The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 33: 5691-5702. (Pubitemid 41548835)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.17
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.-Y.5
Cohoon, M.6
De Crecy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
Linke, B.23
McHardy, A.C.24
Meyer, F.25
Neuweger, H.26
Olsen, G.27
Olson, R.28
Osterman, A.29
Portnoy, V.30
Pusch, G.D.31
Rodionov, D.A.32
Rul33
ckert, C.34
Steiner, J.35
Stevens, R.36
Thiele, I.37
Vassieva, O.38
Ye, Y.39
Zagnitko, O.40
Vonstein, V.41
more..
-
46
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA et al. (2000). Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
-
47
-
-
77955273494
-
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
-
Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E et al. (2010). Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Micro-biol 18: 331-340.
-
(2010)
Trends Micro-biol
, vol.18
, pp. 331-340
-
-
Spang, A.1
Hatzenpichler, R.2
Brochier-Armanet, C.3
Rattei, T.4
Tischler, P.5
Spieck, E.6
-
48
-
-
79953660218
-
A novel pathway for the biosynthesis of heme in Archaea: Genome-based bioinformatic predictions and experimental evidence
-
Storbeck S, Rolfes S, Raux-Deery E, Warren MJ, Jahn D, Layer G. (2010). A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence. Archaea 13: 175050.
-
(2010)
Archaea
, vol.13
, pp. 175050
-
-
Storbeck, S.1
Rolfes, S.2
Raux-Deery, E.3
Warren, M.J.4
Jahn, D.5
Layer, G.6
-
49
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
DOI 10.1093/molbev/msm092
-
Tamura K, Dudley J, Nei M, Kumar S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599. (Pubitemid 47236692)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
50
-
-
4344670204
-
Application of tetranucleotide frequencies for the assignment of genomic fragments
-
DOI 10.1111/j.1462-2920.2004.00624.x
-
Teeling H, Meyerdierks A, Bauer M, Amann R, Glöckner FO. (2004). Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ Microbiol 6: 938-947. (Pubitemid 39123248)
-
(2004)
Environmental Microbiology
, vol.6
, Issue.9
, pp. 938-947
-
-
Teeling, H.1
Meyerdierks, A.2
Bauer, M.3
Amann, R.4
Glockner, F.O.5
-
51
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna M, Stieglmeier M, Spang A, Könneke M, Schintl-meister A, Urich T et al. (2011). Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci USA 108: 8420-8425.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Könneke, M.4
Schintl-Meister, A.5
Urich, T.6
-
52
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ et al. (2010). Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci USA 107: 8818-8823.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
De La Torre, J.R.2
Klotz, M.G.3
Urakawa, H.4
Pinel, N.5
Arp, D.J.6
-
53
-
-
0017249108
-
A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic Bacilli: Some modifications in the Sanger method for RNA sequencing
-
Woese CR, Sogin M, Stahl D, Lewis BJ, Bonen L. (1976). A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic Bacilli: Some modifications in the Sanger method for RNA sequencing. J Mol Evol 7: 197-213.
-
(1976)
J Mol Evol
, vol.7
, pp. 197-213
-
-
Woese, C.R.1
Sogin, M.2
Stahl, D.3
Lewis, B.J.4
Bonen, L.5
-
55
-
-
0025300402
-
Towards a natural system of organisms. Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese CR, Kandler O, Wheelis ML. (1990). Towards a natural system of organisms. Proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87: 4576-4579.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
56
-
-
79951814437
-
The Archaea: A personal overview of the formative years
-
3rd editionDworkin M, Flakow S, Rosenberg E, Karl-Heinz S, Stackenbrandt E (eds)-Springer: Heidelberg
-
Wolfe RS. (2006). The Archaea: a personal overview of the formative years. In: The Prokaryotes: A Handbook on the Biology of Bacteria, 3rd editionDworkin M, Flakow S, Rosenberg E, Karl-Heinz S, Stackenbrandt E (eds)-Springer: Heidelberg, pp 1-8.
-
(2006)
The Prokaryotes: A Handbook on the Biology of Bacteria
, pp. 1-8
-
-
Wolfe, R.S.1
-
57
-
-
62649155346
-
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
-
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE et al. (2009). Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS One 4: e4207.
-
(2009)
PLoS One
, vol.4
-
-
Wu, D.1
Raymond, J.2
Wu, M.3
Chatterji, S.4
Ren, Q.5
Graham, J.E.6
|