Strategies in the Use of Atomic Force Microscopy as a Multiplexed Readout Tool of Chip-Scale Protein Motifs

Combinatorial Materials Science

Volumn , Issue , 2006, Pages 81-107

  Porter, Marc D ^a   Kenseth, Jeremy R ^b,c   Kwarta, Karen M ^b   Driskell, Jeremy D ^b   Neill, John D ^d   Ridpath, Julia F ^d  

^a ARIZONA STATE UNIVERSITY   (United States)

^b IOWA STATE UNIVERSITY   (United States)

^c CombiSep Inc ^*  (United States)

^d NATIONAL ANIMAL DISEASE CENTER   (United States)

Author keywords

AFM immunoassays and multiple address micrometer sized patterning; AFM strategies; Chip scale assay platforms and atomic force microscopy (AFM)

Indexed keywords

EID: 84889409417     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470140475.ch4     Document Type: Chapter

References (110)

1. Szostak, J., Chem. Rev. 97:347-509 (1997).
2. Borman, S., Chem. Eng. News 76:47-54 (1998).
3. Watkins, K., Chem. Eng. News 80:30-34 (2001).
4. Hewes, J. D., et al. Combinatorial Discovery of Catalysts: An ATP Position Paper Developed from Industry Input, Gaithersburg, MD, 1998.
5. Cawse, J. N., Acc. Chem. Res. 34:213-221 (2001).
6. Braeckmans, K., et al. Modern Drug Discov. 6:28-32 (2003).
7. Eskelinen, M. and Haglund, U., Scand. J. Gastroenterol. 34:833-844 (1999).
8. Chomel, B. B., J. Vet. Med. Ed. 30:145-147 (2003).
9. Binning, G., Quate, C. F., and Gerber, C., Phys. Rev. Lett. 56:930 (1986).
10. Gosling, J. P., Clin. Chem. 36:1408 (1990).
11. Hadfield, S. G., Lane, A., and McIllmurray, M. B., J. Immunol. Meth. 97:153 (1987).
12. Michael, K. L., Taylor, L. C., Schultz, S. L., and Walt, D. R., Anal. Chem. 70:1242 (1998).
13. Gutcho, S., and Mansbach, L., Clin. Chem. 23:1609 (1977).
14. Gow, S. M., Caldwell, G., Toft, A. D., and Beckett, G. J., Clin. Chem. 32:2191 (1986).
15. Wians, F. H., Dev, J., Powell, M. M., and Heald, J. I., Clin. Chem. 32:887 (1986).
16. Hayes, F. J., Halsall, H. B., and Heineman, W. R., Anal. Chem. 66:1860-1965 (1994).
17. Bordes, A.-L., Limoges, B., Brossier, P., and Degrand, C., Anal. Chem. Acta 356:195-203 (1997).
18. Buckwalter, J. M., Guo, X., and Meyerhoff, M. E., Anal. Chem. Acta 298:11-18 (1994).
19. Blake, C., Al-Bassam, M. N., Gould., B. J., Marks, V., Bridges, J. W., and Riley, C., Clin. Chem. 28:1469-1473 (1982).
20. Paek, S.-H. and Kim, J.-H., Biotechnol. Bioeng. 51:591 (1996).
21. Macri, J. N., Spencer, K., and Anderson, R., Ann. Clin. Biochem. 29:390-396 (1992).
22. Ohkuma, H., Abe, K., Kosaka, Y., and Maeda, M., Anal. Chem. Acta 395:265-272 (1999).
23. Lewis, J. C. and Daunert, S., Anal. Chem. 71:4321-4327 (1999).
24. Vuori, J., Rasi, S., Takala, T., and Vaananen, K., Clin. Chem. 37:2087 (1991).
25. Salmain, M., Vessieres, A., Brossier, P., and Jaouen, G., Anal. Biochem. 208:117- 124 (1993).
26. Sayo, H. and Hosokawa, M., Chem. Pharm. Bull. 32:1675-1678 (1984).
27. Chen, F.-T. A. and Evangelista, R. A., Clin. Chem. 40:1819-1822 (1994).
28. Sayo, H. Hatsumura, H., and Hosokawa, M., J. Chromatogra. 426:449-451 (1988).
29. Ni, J., Lipert, R. J., Dawson, G. B., and Porter, M. D., Anal. Chem. 71:4903-4908 (1999).
30. Park, H.-Y., Lipert, R. J., and Porter, M. D., Proc. SPIE 464-477 (2004).
31. Grubisha, D. S., Lipert, R. J., Park, H.-Y., Driskell, J., and Porter, M. D., Anal. Chem. 75:5936-5943 (2003).
32. Driskell, J. D., Kwarta, K. M., Lipert, R. J., Porter, M. D., Neill, J. D., and Ridpath, J. F., Anal. Chem. 54:6147-6154 (2005).
33. Takano, H., Kenseth, J. R., Wong, S.-S., O'Brien, J. C., and Porter, M. D., Chem. Rev. 99:2845-2890 (1999).
34. Allen, S., Chen, X., Davies, J., Davies, M. C., Dawkes, A. C., Edwards, J. C., Roberts, C. J., Sefton, J., Tendler, S. J. B., and Williams, P. M., Biochemistry 36:7457-7463 (1997).
35. Reich, Z., Kapon, R., Nevo, R., Pilpel, Y., Zmora, S., and Scolnik, Y., Biotechnol. Adv. 19:451-485 (2001).
36. McHugh, T. M., Wang, Y. J., Chong, H. O., Blackwood, L. L., and Stites, D. P., J. Immunol. Meth. 116:213 (1989).
37. Frengen, J., Lindmo, T., Paus, E., Schmid, R., and Nustad, K., J. Immunol. Meth. 178:141-151 (1995).
38. Martens, C., Bakker, A., Rodriguez, A., Mortensen, R. B., and Barrett, R. W., Anal. Biochem. 273:20-31 (1999).
39. Horisberger, M., Rosset, J., and Bauer, H., Experimentia 31:1147-1149 (1975).
40. Faulk, W. P. and Taylor, G. M., Immunochemistry 8:1081 (1971).
41. Roth, J., Histochem. Cell Biol. 106:1-8 (1996).
42. Horisberger, M. and Rosset, J., J. Histochem. Cytochem. 25:295-305 (1977).
43. Perrin, A., Lanet, V., and Theretz, A., Langmuir 13:2557-2563 (1997).
44. Perrin, A., Theretz, A., and Mandrand, B., Anal. Biochem. 256:200-206 (1998).
45. Perrin, A., Theretz, A., Lanet, V., Vialle, S., and Mandrand, B., J. Immunol. Meth. 224:77-87 (1999).
46. Mazzola, L. T. and Fodor, S. P. A., Biophys. J. 68:1653-1660 (1995).
47. Olk, C. H., Heremans, J., Lee, P. S., Dziedzic, D., and Sargent, N. E., J. Vacuum Sci. Technol. B 9:1268 (1991).
48. Quist, A. P., Bergman, A. A., Reimann, C. T., Oscarsson, S. O., and Sundqvist, B. U. R., Scan. Microsc. 9:395 (1995).
49. Wadu-Mesthrige, K., Xu, S., Amro, N. A., and Liu, G.-Y., Langmuir 15: 8580-8583 (1999).
50. Delamarche, E., Bernard, A., Schmid, H., Bietsch, A., Michel, B., and Biebuyck, H., J. Am. Chem. Soc. 120:500-508 (1998).
51. Bernard, A., Delamarche, E., Schmid, H., Michel, B., Bosshard, H. R., and Biebuyck, H., J. Am. Chem. Soc. 14, 2225-2229 (1998).
52. Jones, V. W., Kenseth, J. R., Porter, M. D., Mosher, C. L., and Henderson, E., Anal. Chem. 70:1233-1241 (1998).
53. O'Brien, J. C., Jones, V. W., Porter, M. D., Mosher, C. L., and Henderson, E., Anal. Chem. 72:703-710 (2000).
54. Kricka, L. J., in Immunoassay, E. P. Diamandis and T. K. Christopoulos (eds.), Academic Press, London, 1996, pp. 389-404.
55. Bottomley, L. A., Anal. Chem. 70:425R-475R (1998).
56. Takano, H., Kenseth, J. R., Wong, S. S., O'Brien, J. C., and Porter, M. D., Chem. Rev. 99:2845-2890 (1999).
57. Masai, J., Sorin, T., and Kondo, S., J. Vacuum Sci. Technol. A 8:713 (1990).
58. Mulhern, P. J., Blackford, B. L., Jericho, M. H., Southam, G., and Beveridge, T. J., Ultramicroscopy 42-44:1214 (1992).
59. Kawashima, K., Sisido, M., and Ichimura, K., Chem. Lett. 491 (1995).
60. Feng, C. -D., Ming, Y. -D., Hesketh, P. J., Gendel, S. M., and Stetter, J. R., Sensors Actuators B: Chem. 35:431 (1996).
61. Eppell, S. J., Simmons, S. R., Albrecht, R. M., and Marchant, R. E., Biophys. J. 68:671 (1995).
62. Putman, C. A. J., Grooth, B. G. d., Hansma, P. K., Hulst, N. F. v., and Greve, J., Ultramicroscopy 48:177-182 (1993).
63. Schneider, S., Folprecht, G., Krohne, G., and Oberleithner, H., Pfluger's Archiv. 430:795-801 (1995).
64. Smith, P. R., Bradford, A. L., Schneider, S., Benos, D. J., and Geibel, J. P., Am. J. Physiol. 272:C1295-C1298 (1997).
65. Shaiu, W. L., Vesenka, J., Jondle, D., Henderson, E., and Larson, D. D., J. Vacuum Sci. Technol. A 11:820-823 (1993).
66. Thimonier, J., Montixi, C., Chauvin, J.-P., He, H. T., Rocca-Serra, J., and Barbet, J., Biophys. J. 73:1627-1632 (1997).
67. Nakano, K., Taira, H., Maeda, M., and Takagi, M., Anal. Sci. 9:133 (1993).
68. Wagner, P., Hegner, M., Kernen, P., Zaugg, F., and Semenza, G., Biophys. J. 70:2052 (1996).
69. Reed, L. J. and Muench, H., Am. J. Hygiene 27:493-497 (1938).
70. Wagner, P., Hegner, M., Guntherodt, H.-J., and Semenza, G., Langmuir 11:3867 (1995).
71. Hegner, B., Wagner, P., and Semenza, G., Surf. Sci. 291:39 (1993).
72. Kumar, A. and Whitesides, G. M., Appl. Phys. Lett. 63:2002-2004 (1993).
73. Chen, C. S., Mrksich, M., Huang, S., Whitesides, G. M., and Ingber, D. E., Biotechnol. Progress 14:356-363 (1998).
74. Libioulle, L., Bietsch, A., Schmid, H., Michel, B., and Delamarche, E., Langmuir 15:300-304 (1999).
75. Diamandis, E. P. and Christopoulos, T. K. (eds.), Immunoassay, Academic Press, London, 1996.
76. Wagner, P., Hegner, M., Kernene, P., Zaugg, F., and Semenza, G., Biophys. J. 70:2052-2066 (1996).
77. Duhachek, S. D., Kenseth, J. R., Casale, G. P., Small, G. J., Porter, M. D., and Jankowiak, R., Anal. Chem. 72:3709-3716 (2000).
78. Jones, V. W., Kenseth, J. R., and Porter, M. D., Anal. Chem. 70:1233-1241 (1998).
79. Burgess, J. D., Jones, V. W., Porter, M. D., Rhoten, M. C., and Hawkridge, F. M., Langmuir 14:6628-6631 (1998).
80. Finot, M. O. and McDermott, M. T., J. Am. Chem. Soc. 119:8564-8565 (1997).
81. Nagao, E. and Dvorak, J. A., Biophys. J. 76:3289-3297 (1999).
82. Sarma, V. R., Silverton, E. W., Davies, D. R., and Terry, W. D., J. Biol. Chem. 246:3753 (1971).
83. Delamarche, E., Sundarababu, G., Biebuyck, H., Michel, B., Gerber, C., Sigrist, H., Wolf, H., Ringsdorf, H., Xanthopoulos, N., and Mathieu, H. J., Langmuir 12:1997-2006 (1996).
84. Roberts, C. J., Williams, P. M., Davies, J., Dawkes, A. C., Sefton, J., Edwards, J. C., Haymes, A. G., Bestwick, C., Davies, M. C., and Tendler, S. J. B., Langmuir 11:1822-1826 (1995).
85. Droz, E., Taborelli, M., Descouts, P., Wells, T. N. C., and Werlen, R. C., J. Vacuum Sci. Technol. B 14:1422 (1996).
86. Grubor, N. M., Shinar, R., Jankowiak, R., Porter, M. D., and Small, G. J., Biosens. Bioelectron. 19:547-556 (2004).
87. Kenseth, J., Wong, S.-S., Takano, H., Jones, V., and Porter, M., "Formation, Structural Characterization, and Reactivity of Organosulfur Monolayers on Gold," Fourier Transform Spectroscopy 12th International Conference, Structures and Dynamics in Organic and Polymeric Systems Symposium, Tokyo, Japan, August 1999, K. Itoh and M. Tasumi, (eds.), Waseda University Press, 179-182.
88. Murphy, F. A., Gibbs, E. P. J., Horzinek, M. C., and Studdert, M. J., Veterinary Virology, 3rd ed., Academic Press, San Diego, 1999.
89. Bidawid, S., Malik, N., Adegbunrin, O., Sattar, S. A., and Farber, J. M., J. Virol. Meth. 107:163-167 (2003).
90. Atmar, R. L. and Estes, M. K., Clin. Microbiol. Rev. 14:15-37 (2001).
91. Chomel, B. B., J. Vet. Med. Educ. 30:145-147 (2003).
92. Grabar, K. C., Brown, K. R., Keating, C. D., Stranick, S. J., Tang, S.-L., and Natan, M. J., Anal. Chem. 69:471-477 (1998).
93. Mulvaney, P. and Giersig, M., J. Chem. Soc. Faraday Trans. 92:3137-3143 (1996).
94. Vesenka, J., Manne, S., Giberson, R., Marsh, T., and Henderson, E., Biophys. J. 65:992-997 (1993).
95. Donaldson, K. A., Kramer, M. F., and Lim, D. V., Biosens. Bioelectron. 20:322- 327 (2004).
96. Ilic, B., Yang, Y., and Craighead, H. G., Appl. Phys. Lett. 85:2604-2606 (2004).
97. Browning-Kelley, M. E., Wadu-Mesthrige, K., Hari, V., and Liu, G. Y., Langmuir 13:343 (1997).
98. Park, K., Simmons, S. R., and Albrecht, R. M., Scan. Microsc. 1:339-350 (1987).
99. Johnstone, R. W., Andrew, S. M., Hogarth, M. P., Pietersz, G. A., and McKenzie, I. F. C., Mol. Immunol. 27:327-333 (1990).
100. Glaser, R. W., Anal. Biochem. 213:152-161 (1993).
101. Takano, H., Kenseth, J. R., Wong, S., and O'Brien, J. C. P., Chem. Rev. 99:2845- 2890 (1999).
102. Croft, D., Shedd, G., and Devasia, S., J. Dyn. Syst. Meas. Control 123:35 (2001).
103. Perez., H., Zou, Q., Devasia, S., J. Dyn. Syst. Meas. Control 126:187 (2004).
104. Heller, M. J., Forster, A. H., and Tu, E., Electrophoresis 21:157-164 (2000).
105. Ewalt, K. L., Haigis, R. W., Rooney, R., Ackley, D., and Krihak, M., Anal. Biochem. 289:162-172 (2001).
106. Pankhurst, Q. A., Connolly, J., Jones, S. K., and Dobson, J., J. Phys. D: Appl. Phys. R167-R181 (2003).
107. Pale-Grosdemange, C., Simon, E. S., Prime, K. L., and Whitesides, G. M., J. Am. Chem. Soc. 113:12-20 (1991).
108. Dong, Y. and Shannon, C., Anal. Chem. 72:2371-2376 (2000).
109. Chang, S.-S., Shih, C.-W., Chen, C.-D., Lai, W.-C., and Wang, C. R. C., Langmuir 15:701-709 (1997).
110. Wei, G.-T., Liu, F.-K., and Wang, C. R. C., Anal. Chem. 71:2085-2091 (1999).