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Volumn 30, Issue 11, 2013, Pages 2475-2486

Pollen-specific, but not sperm-specific, genes show stronger purifying selection and higher rates of positive selection than sporophytic genes in capsella grandiflora

Author keywords

Adaptive evolution; Capsella; Distribution of fitness effects; Gametophytic selection; Haploid; Pollen competition

Indexed keywords

TRANSCRIPTOME;

EID: 84888618647     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst149     Document Type: Article
Times cited : (74)

References (80)
  • 1
    • 38849194141 scopus 로고    scopus 로고
    • Hitchhiking effects of recurrent beneficial amino acid substitutions in Drosophila melanogaster
    • Andolfatto P. 2007. Hitchhiking effects of recurrent beneficial amino acid substitutions in Drosophila melanogaster. Genome Res. 17: 1755-1762.
    • (2007) Genome Res , vol.17 , pp. 1755-1762
    • Andolfatto, P.1
  • 2
    • 33845784227 scopus 로고    scopus 로고
    • Selection, recombination and demographic history in Drosophila miranda
    • Bachtrog D, Andolfatto P. 2006. Selection, recombination and demographic history in Drosophila miranda. Genetics 174:2045-2059.
    • (2006) Genetics , vol.174 , pp. 2045-2059
    • Bachtrog, D.1    Andolfatto, P.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Ser B. 57:289-300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 3042544623 scopus 로고    scopus 로고
    • The genomic rate of adaptive amino acid substitution in Drosophila
    • Bierne N, Eyre-Walker A. 2004. The genomic rate of adaptive amino acid substitution in Drosophila. Mol Biol Evol. 21:1350-1360.
    • (2004) Mol Biol Evol , vol.21 , pp. 1350-1360
    • Bierne, N.1    Eyre-Walker, A.2
  • 7
    • 3042586217 scopus 로고    scopus 로고
    • The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes
    • Boivin K, Acarkan A, Mbulu RS, Clarenz O, Schmidt R. 2004. The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes. Plant Physiol. 135:735-744.
    • (2004) Plant Physiol , vol.135 , pp. 735-744
    • Boivin, K.1    Acarkan, A.2    Mbulu, R.S.3    Clarenz, O.4    Schmidt, R.5
  • 9
    • 67649233595 scopus 로고    scopus 로고
    • Male gametophyte development: A molecular perspective
    • Borg M, Brownfield L, Twell D. 2009. Male gametophyte development: A molecular perspective. J Exp Bot. 60:1465-1478.
    • (2009) J Exp Bot. , vol.60 , pp. 1465-1478
    • Borg, M.1    Brownfield, L.2    Twell, D.3
  • 12
    • 84867053720 scopus 로고    scopus 로고
    • Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
    • 11 co-authors
    • Calarco JP, Borges F, Donoghue MT, et al. (11 co-authors). 2012. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell 151:194-205.
    • (2012) Cell , vol.151 , pp. 194-205
    • Calarco, J.P.1    Borges, F.2    Donoghue, M.T.3
  • 13
    • 84867174024 scopus 로고    scopus 로고
    • The relation of codon bias to tissue-specific gene expression in Arabidopsis thaliana
    • Camiolo S, Farina L, Porceddu A. 2012. The relation of codon bias to tissue-specific gene expression in Arabidopsis thaliana. Genetics 192: 641-649.
    • (2012) Genetics , vol.192 , pp. 641-649
    • Camiolo, S.1    Farina, L.2    Porceddu, A.3
  • 15
    • 12444296547 scopus 로고    scopus 로고
    • Transcript profiling of transcription factor genes during silique development in Arabidopsis
    • deFolter S, Busscher J, Colombo L, Losa A, Angenent GC. 2004. Transcript profiling of transcription factor genes during silique development in Arabidopsis. Plant Mol Biol. 56:351-366.
    • (2004) Plant Mol Biol , vol.56 , pp. 351-366
    • De Folter, S.1    Busscher, J.2    Colombo, L.3    Losa, A.4    Angenent, G.C.5
  • 16
    • 0002730318 scopus 로고    scopus 로고
    • Pollen competition in flowering plants
    • Birkhead T, Møller A, editors. San Diego (CA): Academic Press
    • Delph LF, Havens K. 1998. Pollen competition in flowering plants. In: Birkhead T, Møller A, editors. Sperm competition and sexual selection. San Diego (CA): Academic Press. p. 149-173.
    • (1998) Sperm Competition and Sexual Selection , pp. 149-173
    • Delph, L.F.1    Havens, K.2
  • 17
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • 18 co-authors
    • DePristo M, Banks E, Poplin R, et al. (18 co-authors). 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 43:491-498.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • Depristo, M.1    Banks, E.2    Poplin, R.3
  • 18
    • 84862704382 scopus 로고    scopus 로고
    • Plant fertilization: Maximizing reproductive success
    • Dresselhaus T, Sprunck S. 2012. Plant fertilization: maximizing reproductive success. Curr Biol. 22:R487-R489.
    • (2012) Curr Biol , vol.22
    • Dresselhaus, T.1    Sprunck, S.2
  • 19
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
    • Drummond DA, Wilke CO. 2008. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 134:341-352.
    • (2008) Cell , vol.134 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 20
    • 77954299992 scopus 로고    scopus 로고
    • AgriGO: A GO analysis toolkit for the agricultural community
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z. 2010. agriGO: A GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38:W64-W70.
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 21
    • 0033977618 scopus 로고    scopus 로고
    • Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
    • Duret L, Mouchiroud D. 2000. Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Mol Biol Evol. 17:68-74.
    • (2000) Mol Biol Evol , vol.17 , pp. 68-74
    • Duret, L.1    Mouchiroud, D.2
  • 22
    • 34548013932 scopus 로고    scopus 로고
    • The evolution of sex-biased genes and sex-biased gene expression
    • Ellegren H, Parsch J. 2007. The evolution of sex-biased genes and sex-biased gene expression. Nat Rev Genet. 8:689-698.
    • (2007) Nat Rev Genet , vol.8 , pp. 689-698
    • Ellegren, H.1    Parsch, J.2
  • 23
    • 68949202924 scopus 로고    scopus 로고
    • Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change
    • Eyre-Walker A, Knightly PD. 2009. Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. Mol Biol Evol. 26:2097-2108.
    • (2009) Mol Biol Evol , vol.26 , pp. 2097-2108
    • Eyre-Walker, A.1    Knightly, P.D.2
  • 24
    • 0034924997 scopus 로고    scopus 로고
    • Positive and negative selection on the human genome
    • Fay JC, Wyckoff GJ, Wu CI. 2001. Positive and negative selection on the human genome. Genetics 158:1227-1234.
    • (2001) Genetics , vol.158 , pp. 1227-1234
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 25
    • 1542327663 scopus 로고    scopus 로고
    • Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification
    • Fiebig A, Kimport R, Preuss D. 2004. Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification. Proc Natl Acad Sci. U S A. 101:3286-3291.
    • (2004) Proc Natl Acad Sci. , vol.101 , pp. 3286-3291
    • Fiebig, A.1    Kimport, R.2    Preuss, D.3
  • 26
    • 69249203618 scopus 로고    scopus 로고
    • Ploidy and the causes of genomic evolution
    • Gerstein AC, Otto SP. 2009. Ploidy and the causes of genomic evolution. J Hered. 100:571-581.
    • (2009) J Hered , vol.100 , pp. 571-581
    • Gerstein, A.C.1    Otto, S.P.2
  • 27
    • 34247214027 scopus 로고    scopus 로고
    • Impact of mating systems on patterns of sequence polymorphism in flowering plants
    • Glémin S, Bazin E, Charlesworth D. 2006. Impact of mating systems on patterns of sequence polymorphism in flowering plants. Proc R Soc Biol Sci. B. 273:3011-3019.
    • (2006) Proc R Soc Biol Sci. B , vol.273 , pp. 3011-3019
    • Glémin, S.1    Bazin, E.2    Charlesworth, D.3
  • 29
    • 49749083390 scopus 로고    scopus 로고
    • Positive and negative selection on noncoding DNA in Drosophila simulans
    • Haddrill PR, Bachtrog D, Andolfatto P. 2008. Positive and negative selection on noncoding DNA in Drosophila simulans. Mol Biol Evol. 25: 1825-1834.
    • (2008) Mol Biol Evol , vol.25 , pp. 1825-1834
    • Haddrill, P.R.1    Bachtrog, D.2    Andolfatto, P.3
  • 30
    • 84881028642 scopus 로고    scopus 로고
    • An atlas of over 90, 000 conserved noncoding sequences provides insight into crucifer regulatory regions
    • 29 co-authors
    • Haudry A, Platts AE, Vello E, et al. (29 co-authors). 2013. An atlas of over 90, 000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat Genet. 45:891-898.
    • (2013) Nat Genet , vol.45 , pp. 891-898
    • Haudry, A.1    Platts, A.E.2    Vello, E.3
  • 31
    • 3543013205 scopus 로고    scopus 로고
    • Transcriptional programs of early reproductive stages in Arabidopsis
    • Hennig L, Gruissem W, Grossniklaus U, Köhler C. 2004. Transcriptional programs of early reproductive stages in Arabidopsis. Plant Physiol. 135:1765-1775.
    • (2004) Plant Physiol , vol.135 , pp. 1765-1775
    • Hennig, L.1    Gruissem, W.2    Grossniklaus, U.3    Köhler, C.4
  • 32
    • 84990653007 scopus 로고
    • Pollen germination and pollen-tube growth
    • Heslop-Harrison J. 1987. Pollen germination and pollen-tube growth. Int Rev Cytol. 107:1-78.
    • (1987) Int Rev Cytol , vol.107 , pp. 1-78
    • Heslop-Harrison, J.1
  • 33
    • 17844410215 scopus 로고    scopus 로고
    • Transcriptome analysis of haploid male gametophyte development in Arabidopsis
    • Honys D, Twell D. 2004. Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol. 5:R85.
    • (2004) Genome Biol , vol.5
    • Honys, D.1    Twell, D.2
  • 34
    • 37249042614 scopus 로고    scopus 로고
    • Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
    • Keightley PD, Eyre-Walker A. 2007. Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Genetics 177: 2251-2261.
    • (2007) Genetics , vol.177 , pp. 2251-2261
    • Keightley, P.D.1    Eyre-Walker, A.2
  • 35
    • 77951600170 scopus 로고    scopus 로고
    • What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?
    • Keightley PD, Eyre-Walker A. 2010. What can we learn about the distribution of fitness effects of new mutations from DNA sequence data? Philos Trans R Soc Lond B Biol Sci.. 365:1187-1193.
    • (2010) Philos Trans R Soc Lond B Biol Sci.. , vol.365 , pp. 1187-1193
    • Keightley, P.D.1    Eyre-Walker, A.2
  • 36
    • 84876350995 scopus 로고    scopus 로고
    • A comparison of models to infer the distribution of fitness effects of new mutations
    • Kousathanas A, Keightley PD. 2013. A comparison of models to infer the distribution of fitness effects of new mutations. Genetics 193: 1197-1208.
    • (2013) Genetics , vol.193 , pp. 1197-1208
    • Kousathanas, A.1    Keightley, P.D.2
  • 37
    • 33646882591 scopus 로고    scopus 로고
    • Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution
    • Liao BY, Zhang J. 2006. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Mol Biol Evol. 23:1119-1128.
    • (2006) Mol Biol Evol , vol.23 , pp. 1119-1128
    • Liao, B.Y.1    Zhang, J.2
  • 38
    • 84877789322 scopus 로고    scopus 로고
    • The rate of molecular adaptation in a changing environment
    • Lourenço JM, Glémin S, Galtier N. 2013. The rate of molecular adaptation in a changing environment. Mol Biol Evol. 30:1292-1301.
    • (2013) Mol Biol Evol , vol.30 , pp. 1292-1301
    • Lourenço, J.M.1    Glémin, S.2    Galtier, N.3
  • 39
    • 61849133411 scopus 로고    scopus 로고
    • Long intronic noncoding RNA transcription: Expression noise or expression choice?
    • Louro R, Smirnova AS, Verjovski-Almeida S. 2009. Long intronic noncoding RNA transcription: expression noise or expression choice? Genomics 93:291-298.
    • (2009) Genomics , vol.93 , pp. 291-298
    • Louro, R.1    Smirnova, A.S.2    Verjovski-Almeida, S.3
  • 40
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
    • Lunter G, Goodson M. 2011. Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 21: 936-939.
    • (2011) Genome Res , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 41
    • 75849121947 scopus 로고    scopus 로고
    • The joint evolution of mating system and pollen performance: Predictions regarding male gametophytic evolution in selfers versus outcrossers
    • Mazer SJ, Hove AA, Miller BS, Barbet-Massin M. 2010. The joint evolution of mating system and pollen performance: predictions regarding male gametophytic evolution in selfers versus outcrossers. Perspect Plant Ecol Evol Syst. 12:31-41.
    • (2010) Perspect Plant Ecol Evol Syst , vol.12 , pp. 31-41
    • Mazer, S.J.1    Hove, A.A.2    Miller, B.S.3    Barbet-Massin, M.4
  • 42
    • 84878147503 scopus 로고    scopus 로고
    • Uent adaptation and the McDonald- Kreitman test
    • Freq
    • Messer PW, Petrov DA. 2013. Frequent adaptation and the McDonald- Kreitman test. Proc Natl Acad Sci. U S A. 110:8615-8620.
    • (2013) Proc Natl Acad Sci. U S A , vol.110 , pp. 8615-8620
    • Messer, P.W.1    Petrov, D.A.2
  • 43
    • 62349092322 scopus 로고    scopus 로고
    • Possible diversifying selection in the imprinted gene, MEDEA, in Arabidopsis
    • Miyake T, Takebayashi N, Wolf DE. 2009. Possible diversifying selection in the imprinted gene, MEDEA, in Arabidopsis. Mol Biol Evol. 26: 843-857.
    • (2009) Mol Biol Evol , vol.26 , pp. 843-857
    • Miyake, T.1    Takebayashi, N.2    Wolf, D.E.3
  • 44
    • 79952325292 scopus 로고    scopus 로고
    • Sexual selection in plants
    • Moore JC, Pannell JR. 2011. Sexual selection in plants. Curr Biol. 21: R176-R182.
    • (2011) Curr Biol , vol.21
    • Moore, J.C.1    Pannell, J.R.2
  • 45
    • 0033962299 scopus 로고    scopus 로고
    • Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization
    • Nordborg M. 2000. Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization. Genetics 154:923-929.
    • (2000) Genetics , vol.154 , pp. 923-929
    • Nordborg, M.1
  • 46
    • 78249266606 scopus 로고    scopus 로고
    • A phylogenetic approach to test for evidence of parental conflict or gene duplications associated with proteinencoding imprinted orthologous genes in placental mammals
    • O'Connell MJ, Loughran NB, Walsh TA, Donoghue MT, Schmid KJ, Spillane C. 2010. A phylogenetic approach to test for evidence of parental conflict or gene duplications associated with proteinencoding imprinted orthologous genes in placental mammals. Mamm Genome. 21:486-498.
    • (2010) Mamm Genome , vol.21 , pp. 486-498
    • O'connell, M.J.1    Loughran, N.B.2    Walsh, T.A.3    Donoghue, M.T.4    Schmid, K.J.5    Spillane, C.6
  • 47
    • 0028224163 scopus 로고
    • Does diploidy increase the rate of adaptation?
    • Orr H, Otto S. 1994. Does diploidy increase the rate of adaptation? Genetics 136:1475-1480.
    • (1994) Genetics , vol.136 , pp. 1475-1480
    • Orr, H.1    Otto, S.2
  • 48
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • Pál C, Papp B, Hurst LD. 2001. Highly expressed genes in yeast evolve slowly. Genetics 158:927-931.
    • (2001) Genetics , vol.158 , pp. 927-931
    • Pál, C.1    Papp, B.2    Hurst, L.D.3
  • 49
    • 84874250754 scopus 로고    scopus 로고
    • Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly
    • Park C, Chen X, Yang JR, Zhang J. 2013. Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Proc Natl Acad Sci. U S A. 110:E678-E686.
    • (2013) Proc Natl Acad Sci. , vol.110
    • Park, C.1    Chen, X.2    Yang, J.R.3    Zhang, J.4
  • 50
    • 84872546066 scopus 로고    scopus 로고
    • The evolutionary causes and consequences of sex-biased gene expression
    • Parsch J, Ellegren H. 2013. The evolutionary causes and consequences of sex-biased gene expression. Nat Rev Genet. 14:83-87.
    • (2013) Nat Rev Genet , vol.14 , pp. 83-87
    • Parsch, J.1    Ellegren, H.2
  • 51
    • 26944493068 scopus 로고    scopus 로고
    • Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation
    • Pina C, Pinto F, Feijó JA, Becker JD. 2005. Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol. 138:744-756.
    • (2005) Plant Physiol , vol.138 , pp. 744-756
    • Pina, C.1    Pinto, F.2    Feijó, J.A.3    Becker, J.D.4
  • 52
    • 79961135005 scopus 로고    scopus 로고
    • R Development Core Team. Vienna (Austria): R Foundation for Statistical Computing
    • R Development Core Team. 2011. R: A language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.
    • (2011) R: A Language and Environment for Statistical Computing
  • 53
    • 0023413802 scopus 로고
    • Confidence interval for the number of selectively neutral amino acid polymorphisms
    • Sawyer SA, Dykhuizen DE, Hartl DL. 1987. Confidence interval for the number of selectively neutral amino acid polymorphisms. Proc Natl Acad Sci. U S A. 84:6225-6228.
    • (1987) Proc Natl Acad Sci. U S A , vol.84 , pp. 6225-6228
    • Sawyer, S.A.1    Dykhuizen, D.E.2    Hartl, D.L.3
  • 54
    • 1842505238 scopus 로고    scopus 로고
    • Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species
    • Schein M, Yang Z, Mitchell-Olds T, Schmid KJ. 2004. Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species. Mol Biol Evol. 21:659-669.
    • (2004) Mol Biol Evol , vol.21 , pp. 659-669
    • Schein, M.1    Yang, Z.2    Mitchell-Olds, T.3    Schmid, K.J.4
  • 55
    • 80053305681 scopus 로고    scopus 로고
    • Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development
    • Schmidt A, Wuest SE, Vijverberg K, Baroux C, Kleen D, Grossniklaus U. 2011. Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development. PLoS Biol. 9:e1001155.
    • (2011) PLoS Biol , vol.9
    • Schmidt, A.1    Wuest, S.E.2    Vijverberg, K.3    Baroux, C.4    Kleen, D.5    Grossniklaus, U.6
  • 56
    • 33745638358 scopus 로고    scopus 로고
    • Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction
    • Seoighe C, Gehring C, Hurst L. 2005. Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction. PLoS Genet. 1:e13.
    • (2005) PLoS Genet , vol.1
    • Seoighe, C.1    Gehring, C.2    Hurst, L.3
  • 58
    • 77954966377 scopus 로고    scopus 로고
    • Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size
    • Slotte T, Foxe JP, Hazzouri KM, Wright SI. 2010. Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size.Mol Biol Evol. 27: 1813-1821.
    • (2010) Mol Biol Evol , vol.27 , pp. 1813-1821
    • Slotte, T.1    Foxe, J.P.2    Hazzouri, K.M.3    Wright, S.I.4
  • 59
    • 84879686532 scopus 로고    scopus 로고
    • The Capsella rubella genome and the genomic consequences of rapid mating system evolution
    • 36 co-authors
    • Slotte T, Hazzouri KM, Ågren JA, et al. (36 co-authors). 2013. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet. 45:831-835.
    • (2013) Nat Genet , vol.45 , pp. 831-835
    • Slotte, T.1    Hazzouri, K.M.2    Ågren, G.J.A.3
  • 60
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • Smith NG, Eyre-Walker A. 2002. Adaptive protein evolution in Drosophila. Nature 415:1022-1024.
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.1    Eyre-Walker, A.2
  • 62
    • 45949105543 scopus 로고    scopus 로고
    • DIALIGN-TX: Greedy and progressive approaches for segment-based multiple sequence alignment
    • Subramanian AR, Kaufmann M, Morgenstern B. 2008. DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms Mol Biol. 3:6.
    • (2008) Algorithms Mol Biol , vol.3 , pp. 6
    • Subramanian, A.R.1    Kaufmann, M.2    Morgenstern, B.3
  • 64
    • 84888589655 scopus 로고    scopus 로고
    • Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss
    • Szövényi P, Ricca M, Hock Z, Shaw JA, Shimizu KK, Wagner A. 2013. Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss. Mol Biol Evol. 30: 1929-1939.
    • (2013) Mol Biol Evol , vol.30 , pp. 1929-1939
    • Szövényi, P.1    Ricca, M.2    Hock, Z.3    Shaw, J.A.4    Shimizu, K.K.5    Wagner, A.6
  • 66
    • 0032047371 scopus 로고    scopus 로고
    • Segregating sites in Wright's island model
    • Wakeley J. 1998. Segregating sites in Wright's island model. Theor Popul Biol. 53:166-174.
    • (1998) Theor Popul Biol , vol.53 , pp. 166-174
    • Wakeley, J.1
  • 67
    • 0032736182 scopus 로고    scopus 로고
    • Nonequilibrium migration in human history
    • Wakeley J. 1999. Nonequilibrium migration in human history. Genetics 153:1863-1871.
    • (1999) Genetics , vol.153 , pp. 1863-1871
    • Wakeley, J.1
  • 68
    • 0041707987 scopus 로고    scopus 로고
    • Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humans
    • Wakeley J, Lessard S. 2003. Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humans. Genetics 164:1043-1053.
    • (2003) Genetics , vol.164 , pp. 1043-1053
    • Wakeley, J.1    Lessard, S.2
  • 69
    • 57749119299 scopus 로고    scopus 로고
    • Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
    • Wang Y, ZhangWZ, Song LF, Zou JJ, Su Z, Wu WH. 2008. Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol. 148: 1201-1211.
    • (2008) Plant Physiol , vol.148 , pp. 1201-1211
    • Wang, Y.1    Zhangwz2    Song, L.F.3    Zou, J.J.4    Su, Z.5    Wu, W.H.6
  • 70
    • 34447498666 scopus 로고    scopus 로고
    • Gender-specific selection on codon usage in plant genomes
    • Whittle CA, Malik MR, Krochko E. 2007. Gender-specific selection on codon usage in plant genomes. BMC Genomics 8:169.
    • (2007) BMC Genomics , vol.8 , pp. 169
    • Whittle, C.A.1    Malik, M.R.2    Krochko, E.3
  • 71
    • 75949083441 scopus 로고    scopus 로고
    • Comparative transcript analyses of the ovule, microspore, and mature pollen in Brassica napus
    • Whittle CA, Malik MR, Li R, Krochko JE. 2010. Comparative transcript analyses of the ovule, microspore, and mature pollen in Brassica napus. Plant Mol Biol. 72:279-299.
    • (2010) Plant Mol Biol , vol.72 , pp. 279-299
    • Whittle, C.A.1    Malik, M.R.2    Li, R.3    Krochko, J.E.4
  • 72
    • 0001253744 scopus 로고
    • Sexual selection in plants
    • Willson MF. 1979. Sexual selection in plants. Am Nat. 113:777-790.
    • (1979) Am Nat , vol.113 , pp. 777-790
    • Willson, M.F.1
  • 76
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 77
    • 79961064486 scopus 로고    scopus 로고
    • Factors that contribute to variation in evolutionary rate among Arabidopsis genes
    • Yang L, Gaut BS. 2011. Factors that contribute to variation in evolutionary rate among Arabidopsis genes. Mol Biol Evol. 28:2359-2369.
    • (2011) Mol Biol Evol , vol.28 , pp. 2359-2369
    • Yang, L.1    Gaut, B.S.2
  • 78
    • 84859473329 scopus 로고    scopus 로고
    • Protein misinteraction avoidance causes highly expressed proteins to evolve slowly
    • Yang JR, Liao BY, Zhuang SM, Zhang J. 2012. Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Proc Natl Acad Sci. U S A. 109:E831-E840.
    • Proc Natl Acad Sci. , vol.109
    • Yang, J.R.1    Liao, B.Y.2    Zhuang, S.M.3    Zhang, J.4
  • 79
    • 1542286776 scopus 로고    scopus 로고
    • Mammalian housekeeping genes evolve more slowly than tissue-specific genes
    • Zhang L, Li WH. 2004. Mammalian housekeeping genes evolve more slowly than tissue-specific genes. Mol Biol Evol. 21:236-239.
    • (2004) Mol Biol Evol , vol.21 , pp. 236-239
    • Zhang, L.1    Li, W.H.2
  • 80
    • 0017227120 scopus 로고
    • Evolutionary processes and evolutionary noise at the molecular level I. Functional density in proteins
    • Zuckerkandl E. 1976. Evolutionary processes and evolutionary noise at the molecular level I. Functional density in proteins. J Mol Evol. 7: 167-183.
    • (1976) J Mol Evol , vol.7 , pp. 167-183
    • Zuckerkandl, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.