메뉴 건너뛰기




Volumn 448, Issue 7151, 2007, Pages 349-352

Positive darwinian selection at the imprinted MEDEA locus in plants

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; AUTOGAMY; COEVOLUTION; DICOTYLEDON; EMBRYO; GENOME; MAMMAL; NATURAL SELECTION; NUTRIENT; PARENTAGE; RESOURCE ALLOCATION;

EID: 34447521864     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature05984     Document Type: Article
Times cited : (131)

References (41)
  • 1
    • 0001076782 scopus 로고
    • Parent-specific gene expression and the triploid endosperm
    • Haig, D. & Westoby, M. Parent-specific gene expression and the triploid endosperm. Am. Nat. 134, 147-155 (1989).
    • (1989) Am. Nat , vol.134 , pp. 147-155
    • Haig, D.1    Westoby, M.2
  • 2
    • 33645453109 scopus 로고    scopus 로고
    • Regulation of growth and metabolism by imprinted genes
    • Smith, F. M., Garfield, A. S. & Ward, A. Regulation of growth and metabolism by imprinted genes. Cytogenet. Genome Res. 113, 279-291 (2006).
    • (2006) Cytogenet. Genome Res , vol.113 , pp. 279-291
    • Smith, F.M.1    Garfield, A.S.2    Ward, A.3
  • 3
    • 0030940219 scopus 로고    scopus 로고
    • Molecular evolution of imprinted genes: No evidence for antagonistic coevolution
    • McVean, G. T. & Hurst, L. D. Molecular evolution of imprinted genes: no evidence for antagonistic coevolution. Proc. R. Soc. Lond. B 264, 739-746 (1997).
    • (1997) Proc. R. Soc. Lond. B , vol.264 , pp. 739-746
    • McVean, G.T.1    Hurst, L.D.2
  • 4
    • 0032540508 scopus 로고    scopus 로고
    • Maternal control of embryogenesis by MEDEA, a Polycomb group gene in Arabidopsis
    • Grossniklaus, U., Vielle-Calzada, J. P., Hoeppner, M. A. & Gagliano, W. B. Maternal control of embryogenesis by MEDEA, a Polycomb group gene in Arabidopsis. Science 280, 446-450 (1998).
    • (1998) Science , vol.280 , pp. 446-450
    • Grossniklaus, U.1    Vielle-Calzada, J.P.2    Hoeppner, M.A.3    Gagliano, W.B.4
  • 5
    • 0032707566 scopus 로고    scopus 로고
    • Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity
    • Vielle-Calzada, J. P. et al. Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity. Genes Dev. 13, 2971-2982 (1999).
    • (1999) Genes Dev , vol.13 , pp. 2971-2982
    • Vielle-Calzada, J.P.1
  • 6
    • 9144230748 scopus 로고    scopus 로고
    • Interaction of Polycomb-group proteins controlling flowering in Arabidopsis
    • Chanvivattana, Y. et al. Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development 131, 5263-5276 (2004).
    • (2004) Development , vol.131 , pp. 5263-5276
    • Chanvivattana, Y.1
  • 7
    • 0141960164 scopus 로고    scopus 로고
    • Walter, J. & Paulsen, M. The potential role of gene duplications in the evolution of imprinting mechanisms. Hum. Mol. Genet. 12 (review issue 2), R215-R220 (2003).
    • Walter, J. & Paulsen, M. The potential role of gene duplications in the evolution of imprinting mechanisms. Hum. Mol. Genet. 12 (review issue 2), R215-R220 (2003).
  • 8
    • 0344980397 scopus 로고    scopus 로고
    • Control of fertilization-independent endosperm development by the MEDEA Polycomb gene in Arabidopsis
    • Kiyosue, T. et al. Control of fertilization-independent endosperm development by the MEDEA Polycomb gene in Arabidopsis. Proc. Natl Acad. Sci. USA 96, 4186-4191 (1999).
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 4186-4191
    • Kiyosue, T.1
  • 9
    • 0030998525 scopus 로고    scopus 로고
    • A Polycomb-group gene regulates homeotic gene expression in Arabidopsis
    • Goodrich, J. et al. A Polycomb-group gene regulates homeotic gene expression in Arabidopsis. Nature 386, 44-51 (1997).
    • (1997) Nature , vol.386 , pp. 44-51
    • Goodrich, J.1
  • 10
    • 0035503921 scopus 로고    scopus 로고
    • The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
    • Baumbusch, L. O. et al. The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res. 29, 4319-4333 (2001).
    • (2001) Nucleic Acids Res , vol.29 , pp. 4319-4333
    • Baumbusch, L.O.1
  • 11
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc, G., Hokamp, K. & Wolfe, K. H. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13, 137-144 (2003).
    • (2003) Genome Res , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 13
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers, J. E., Chapman, B. A., Rong, J. & Paterson, A. H. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422, 433-438 (2003).
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 14
    • 0036010498 scopus 로고    scopus 로고
    • Sequence relationships, conserved domains, and expression patterns for maize homologs of the Polycomb group genes E(z), esc, and E(Pc)
    • Springer, N. M. et al. Sequence relationships, conserved domains, and expression patterns for maize homologs of the Polycomb group genes E(z), esc, and E(Pc). Plant Physiol. 128, 1332-1345 (2002).
    • (2002) Plant Physiol , vol.128 , pp. 1332-1345
    • Springer, N.M.1
  • 15
    • 0038459131 scopus 로고    scopus 로고
    • Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots
    • Springer, N. M. et al. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol. 132, 907-925 (2003).
    • (2003) Plant Physiol , vol.132 , pp. 907-925
    • Springer, N.M.1
  • 16
    • 0041783542 scopus 로고    scopus 로고
    • Isolation and expression analysis of petunia CURLY LEAF-like genes
    • Mayama, T., Ohtsubo, E. & Tsuchimoto, S. Isolation and expression analysis of petunia CURLY LEAF-like genes. Plant Cell Physiol. 44, 811-819 (2003).
    • (2003) Plant Cell Physiol , vol.44 , pp. 811-819
    • Mayama, T.1    Ohtsubo, E.2    Tsuchimoto, S.3
  • 17
    • 0141648396 scopus 로고    scopus 로고
    • A Polycomb group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development
    • Thakur, J. K. et al. A Polycomb group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development. Gene 314, 1-13 (2003).
    • (2003) Gene , vol.314 , pp. 1-13
    • Thakur, J.K.1
  • 18
    • 0029893716 scopus 로고    scopus 로고
    • A mutation that allows endosperm development without fertilization
    • Ohad, N. et al. A mutation that allows endosperm development without fertilization. Proc. Natl Acad. Sci. USA 93, 5319-5324 (1996).
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 5319-5324
    • Ohad, N.1
  • 19
    • 0030887626 scopus 로고    scopus 로고
    • Fertilization-independent seed development in Arabidopsis thaliana
    • Chaudhury, A. M. et al. Fertilization-independent seed development in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 94, 4223-4228 (1997).
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 4223-4228
    • Chaudhury, A.M.1
  • 20
    • 3242887908 scopus 로고    scopus 로고
    • Identification of new members of FERTILISATION INDEPENDENT SEED Polycomb group pathway involved in the control of seed development in Arabidopsis thaliana
    • Guitton, A. E. et al. Identification of new members of FERTILISATION INDEPENDENT SEED Polycomb group pathway involved in the control of seed development in Arabidopsis thaliana. Development 131, 2971-2981 (2004).
    • (2004) Development , vol.131 , pp. 2971-2981
    • Guitton, A.E.1
  • 21
    • 0141737068 scopus 로고    scopus 로고
    • Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development
    • Köhler, C. et al. Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J. 22, 4804-4814 (2003).
    • (2003) EMBO J , vol.22 , pp. 4804-4814
    • Köhler, C.1
  • 22
    • 33748372575 scopus 로고    scopus 로고
    • Partially redundant functions of two SET-domain Polycomb-group proteins in controlling initiation of seed development in Arabidopsis
    • Wang, D., Tyson, M. D., Jackson, S. S. & Yadegari, R. Partially redundant functions of two SET-domain Polycomb-group proteins in controlling initiation of seed development in Arabidopsis. Proc. Natl Acad. Sci. USA 103, 13244-13249 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 13244-13249
    • Wang, D.1    Tyson, M.D.2    Jackson, S.S.3    Yadegari, R.4
  • 23
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang, Z. & Bielawski, J. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15, 496-503 (2000).
    • (2000) Trends Ecol. Evol , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.2
  • 24
    • 3042842589 scopus 로고    scopus 로고
    • A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution
    • Bielawski, J. P. & Yang, Z. A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution. J. Mol. Evol. 59, 121-132 (2004).
    • (2004) J. Mol. Evol , vol.59 , pp. 121-132
    • Bielawski, J.P.1    Yang, Z.2
  • 25
    • 17444402038 scopus 로고    scopus 로고
    • A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism
    • Schmid, K. J., Ramos-Onsins, S., Ringys-Beckstein, H., Weishaar, B. & Mitchell-Olds, T. A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics 169, 1601-1615 (2005).
    • (2005) Genetics , vol.169 , pp. 1601-1615
    • Schmid, K.J.1    Ramos-Onsins, S.2    Ringys-Beckstein, H.3    Weishaar, B.4    Mitchell-Olds, T.5
  • 26
    • 33745127746 scopus 로고    scopus 로고
    • Dynamic regulatory interactions of Polycomb group genes: MEDEA autoregulation is required for imprinted gene expression in Arabidopsis
    • Baroux, C., Gagliardini, V., Page, D. R. & Grossniklaus, U. Dynamic regulatory interactions of Polycomb group genes: MEDEA autoregulation is required for imprinted gene expression in Arabidopsis. Genes Dev. 20, 1081-1086 (2006).
    • (2006) Genes Dev , vol.20 , pp. 1081-1086
    • Baroux, C.1    Gagliardini, V.2    Page, D.R.3    Grossniklaus, U.4
  • 27
    • 0042768158 scopus 로고    scopus 로고
    • Genome-wide insertional mutagenesis of Arabidopsis thaliana
    • Alonso, J. M. et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653-657 (2003).
    • (2003) Science , vol.301 , pp. 653-657
    • Alonso, J.M.1
  • 28
    • 84945514367 scopus 로고    scopus 로고
    • Adachi, J. H. M. MOLPHY Version 2.3: Programs for molecular phylogenetics based on Maximum Likelihood. Comp. Sci. Monogr. 28, 1-150 1996
    • Adachi, J. H. M. MOLPHY Version 2.3: Programs for molecular phylogenetics based on Maximum Likelihood. Comp. Sci. Monogr. 28, 1-150 (1996).
  • 29
    • 0031960185 scopus 로고    scopus 로고
    • Synonymous and non-synonymous rate variation in nuclear genes of mammals
    • Yang, Z. & Nielsen, R. Synonymous and non-synonymous rate variation in nuclear genes of mammals. J. Mol. Evol. 46, 409-418 (1998).
    • (1998) J. Mol. Evol , vol.46 , pp. 409-418
    • Yang, Z.1    Nielsen, R.2
  • 30
    • 0347513220 scopus 로고    scopus 로고
    • DNAsp, DNA polymorphism analyses by the coalescent and other methods
    • Rozas, J., Sanchez-DelBarrio, J. C., Messeguer, X. & Rozas, R. DNAsp, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19, 2496-2497 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 31
    • 0025667013 scopus 로고
    • floricaula: A homeotic gene required for flower development in Antirrhinum majus
    • Coen, E. S. et al. floricaula: a homeotic gene required for flower development in Antirrhinum majus. Cell 63, 1311-1322 (1990).
    • (1990) Cell , vol.63 , pp. 1311-1322
    • Coen, E.S.1
  • 33
    • 0031051671 scopus 로고    scopus 로고
    • The Arabidopsis ACT11 actin gene is strongly expressed in tissues of the emerging inflorescence, pollen, and developing ovules
    • Huang, S., An, Y. Q., McDowell, J. M., McKinney, E. C. & Meagher, R. B. The Arabidopsis ACT11 actin gene is strongly expressed in tissues of the emerging inflorescence, pollen, and developing ovules. Plant Mol. Biol. 33, 125-139 (1997).
    • (1997) Plant Mol. Biol , vol.33 , pp. 125-139
    • Huang, S.1    An, Y.Q.2    McDowell, J.M.3    McKinney, E.C.4    Meagher, R.B.5
  • 34
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang, Z. & Nielsen, R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17, 32-43 (2000).
    • (2000) Mol. Biol. Evol , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 35
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang, Z. & Nielsen, R. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19, 908-917 (2002).
    • (2002) Mol. Biol. Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 36
    • 17444402038 scopus 로고    scopus 로고
    • A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism
    • Schmid, K. J., Ramos-Onsins, S., Ringys-Beckstein, H., Weisshaar, B. & Mitchell-Olds, T. A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics 169, 1601-1615 (2005).
    • (2005) Genetics , vol.169 , pp. 1601-1615
    • Schmid, K.J.1    Ramos-Onsins, S.2    Ringys-Beckstein, H.3    Weisshaar, B.4    Mitchell-Olds, T.5
  • 38
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595 (1989).
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 39
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J. C. & Wu, C.-I. Hitchhiking under positive Darwinian selection. Genetics 155, 1405-1413 (2000).
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 40
    • 0026428610 scopus 로고
    • Adaptive evolution at the Adh locus in Drosophila
    • McDonald, J. & Kreitman, M. Adaptive evolution at the Adh locus in Drosophila. Nature 351, 652-654 (1991).
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.1    Kreitman, M.2
  • 41
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson, R. R., Kreitman, M. & Aguade, M. A test of neutral molecular evolution based on nucleotide data. Genetics 116, 153-159 (1987).
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.