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Volumn 135, Issue 2, 2004, Pages 735-744

The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; GENES; MAPPING; PROTEINS; SCANNING;

EID: 3042586217     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.104.040030     Document Type: Article
Times cited : (75)

References (40)
  • 1
    • 0343953493 scopus 로고    scopus 로고
    • Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella
    • Acarkan A, Rossberg M, Koch M, Schmidt R (2000) Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella. Plant J 23: 55-62
    • (2000) Plant J , vol.23 , pp. 55-62
    • Acarkan, A.1    Rossberg, M.2    Koch, M.3    Schmidt, R.4
  • 3
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis tlialiana
    • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis tlialiana. Nature 408: 796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 0037294791 scopus 로고    scopus 로고
    • Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: Complexity of the comparative map
    • Babula D, Kaczmarek M, Barakat A, Delseny M, Quiros CF, Sadowski J (2003) Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map. Mol Genet Genomics 268: 656-665
    • (2003) Mol Genet Genomics , vol.268 , pp. 656-665
    • Babula, D.1    Kaczmarek, M.2    Barakat, A.3    Delseny, M.4    Quiros, C.F.5    Sadowski, J.6
  • 5
    • 0033869323 scopus 로고    scopus 로고
    • Comparative sequence analysis of plant nuclear genomes: Microcolinearity and its many exceptions
    • Bennetzen JL (2000) Comparative sequence analysis of plant nuclear genomes: microcolinearity and its many exceptions. Plant Cell 12: 1021-1029
    • (2000) Plant Cell , vol.12 , pp. 1021-1029
    • Bennetzen, J.L.1
  • 6
    • 0033891353 scopus 로고    scopus 로고
    • Extensive duplication and reshuffling in the Arabidopsis genome
    • Blanc G, Barakat A, Guyot R, Cooke R, Delseny M (2000) Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101
    • (2000) Plant Cell , vol.12 , pp. 1093-1101
    • Blanc, G.1    Barakat, A.2    Guyot, R.3    Cooke, R.4    Delseny, M.5
  • 7
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 8
    • 0030087850 scopus 로고    scopus 로고
    • RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4
    • Copenhaver GP, Pikaard CS (1996) RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4. Plant J 9: 259-272
    • (1996) Plant J , vol.9 , pp. 259-272
    • Copenhaver, G.P.1    Pikaard, C.S.2
  • 10
    • 0027947293 scopus 로고
    • An Arabidopsis thaliana RFLP mapping set to localize mutations to chromosomal regions
    • Fabri C, Schäffner A (1994) An Arabidopsis thaliana RFLP mapping set to localize mutations to chromosomal regions. Plant J 5: 149-156
    • (1994) Plant J , vol.5 , pp. 149-156
    • Fabri, C.1    Schäffner, A.2
  • 12
    • 0034675997 scopus 로고    scopus 로고
    • Species-specific double-strand break repair and genome evolution in plants
    • Kirik A, Salomon S, Puchta H (2000) Species-specific double-strand break repair and genome evolution in plants. EMBO J 19: 5562-5566
    • (2000) EMBO J , vol.19 , pp. 5562-5566
    • Kirik, A.1    Salomon, S.2    Puchta, H.3
  • 13
    • 0032694941 scopus 로고    scopus 로고
    • Molecular systematics and evolution of Arabidopsis and Arabis
    • Koch M, Bishop J, Mitchell-Olds T (1999) Molecular systematics and evolution of Arabidopsis and Arabis. Plant Biol 1: 529-537
    • (1999) Plant Biol , vol.1 , pp. 529-537
    • Koch, M.1    Bishop, J.2    Mitchell-Olds, T.3
  • 14
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
    • Koch MA, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol 17: 1483-1498
    • (2000) Mol Biol Evol , vol.17 , pp. 1483-1498
    • Koch, M.A.1    Haubold, B.2    Mitchell-Olds, T.3
  • 15
    • 0001692896 scopus 로고    scopus 로고
    • Molecular systematics of the Brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences
    • Koch M, Haubold B, Mitchell-Olds T (2001) Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. Am J Bot 88: 534-544
    • (2001) Am J Bot , vol.88 , pp. 534-544
    • Koch, M.1    Haubold, B.2    Mitchell-Olds, T.3
  • 16
    • 0027994623 scopus 로고
    • Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization
    • Kowalski SP, Lan T-H, Feldmann KA, Paterson AH (1994) Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization. Genetics 138: 499-510
    • (1994) Genetics , vol.138 , pp. 499-510
    • Kowalski, S.P.1    Lan, T.-H.2    Feldmann, K.A.3    Paterson, A.H.4
  • 17
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • Lagercrantz U (1998) Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150: 1217-1228
    • (1998) Genetics , vol.150 , pp. 1217-1228
    • Lagercrantz, U.1
  • 18
    • 0030454609 scopus 로고    scopus 로고
    • Comparative genome mapping in Brassica
    • Lagercrantz U, Lydiate D (1996) Comparative genome mapping in Brassica. Genetics 144: 1903-1910
    • (1996) Genetics , vol.144 , pp. 1903-1910
    • Lagercrantz, U.1    Lydiate, D.2
  • 20
    • 0030268467 scopus 로고    scopus 로고
    • Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana recombinant inbred lines
    • Liu Y-G, Mitsukawa N, Lister C, Dean C, Whittier RF (1996) Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana recombinant inbred lines. Plant J 10: 733-736
    • (1996) Plant J , vol.10 , pp. 733-736
    • Liu, Y.-G.1    Mitsukawa, N.2    Lister, C.3    Dean, C.4    Whittier, R.F.5
  • 21
    • 0032779774 scopus 로고    scopus 로고
    • Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae
    • Livingstone KD, Lackney VK, Blauth JR, van Wijk R, Jahn MK (1999) Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics 152: 1183-1202
    • (1999) Genetics , vol.152 , pp. 1183-1202
    • Livingstone, K.D.1    Lackney, V.K.2    Blauth, J.R.3    Van Wijk, R.4    Jahn, M.K.5
  • 22
    • 0038192129 scopus 로고    scopus 로고
    • Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana
    • Lukens L, Zou F, Lydiate D, Parkin I, Osborn T (2003) Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164: 359-372
    • (2003) Genetics , vol.164 , pp. 359-372
    • Lukens, L.1    Zou, F.2    Lydiate, D.3    Parkin, I.4    Osborn, T.5
  • 23
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 24
    • 0037847458 scopus 로고    scopus 로고
    • Recent progress in chromosome painting of Arabidopsis and related species
    • Lysak MA, Pecinka A, Schubert I (2003) Recent progress in chromosome painting of Arabidopsis and related species. Chromosome Res 11: 195-204
    • (2003) Chromosome Res , vol.11 , pp. 195-204
    • Lysak, M.A.1    Pecinka, A.2    Schubert, I.3
  • 25
    • 0035164656 scopus 로고    scopus 로고
    • Map Manager QTX, cross-platform software for genetic mapping
    • Manly KF, Cudmore RH, Jr., Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12: 930-932
    • (2001) Mamm Genome , vol.12 , pp. 930-932
    • Manly, K.F.1    Cudmore Jr., R.H.2    Meer, J.M.3
  • 26
    • 0036796369 scopus 로고    scopus 로고
    • Current methods of gene prediction, their strengths and weaknesses
    • Mathé C, Sagot MF, Schiex T, Rouzé P (2002) Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res 30: 4103-4117
    • (2002) Nucleic Acids Res , vol.30 , pp. 4103-4117
    • Mathé, C.1    Sagot, M.F.2    Schiex, T.3    Rouzé, P.4
  • 28
    • 0033893554 scopus 로고    scopus 로고
    • Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana
    • O'Neill CM, Bancroft I (2000) Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana. Plant J 23: 233-243
    • (2000) Plant J , vol.23 , pp. 233-243
    • O'Neill, C.M.1    Bancroft, I.2
  • 30
    • 0035032414 scopus 로고    scopus 로고
    • Comparative sequence analysis reveals extensive microcolinearity in the Lateral suppressor regions of the tomato, Arabidopsis and Capsella genomes
    • Rossberg M, Theres K, Acarkan A, Herrero R, Schmitt T, Schumacher K, Schmitz G, Schmidt R (2001) Comparative sequence analysis reveals extensive microcolinearity in the Lateral suppressor regions of the tomato, Arabidopsis and Capsella genomes. Plant Cell 13: 979-988
    • (2001) Plant Cell , vol.13 , pp. 979-988
    • Rossberg, M.1    Theres, K.2    Acarkan, A.3    Herrero, R.4    Schmitt, T.5    Schumacher, K.6    Schmitz, G.7    Schmidt, R.8
  • 31
    • 0028116158 scopus 로고
    • Rapid silver staining and recovery of PCR products separated on polyacrylamide gels
    • Sanguinetti CJ, Dias Neto E, Simpson AJ (1994) Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17: 914-921
    • (1994) Biotechniques , vol.17 , pp. 914-921
    • Sanguinetti, C.J.1    Dias Neto, E.2    Simpson, A.J.3
  • 32
    • 0034096819 scopus 로고    scopus 로고
    • Synteny: Recent advances and future prospects
    • Schmidt R (2000) Synteny: recent advances and future prospects. Curr Opin Plant Biol 3: 97-102
    • (2000) Curr Opin Plant Biol , vol.3 , pp. 97-102
    • Schmidt, R.1
  • 33
    • 0036007664 scopus 로고    scopus 로고
    • Plant genome evolution: Lessons from comparative genomics at the DNA level
    • Schmidt R (2002) Plant genome evolution: lessons from comparative genomics at the DNA level. Plant Mol Biol 48: 21-37
    • (2002) Plant Mol Biol , vol.48 , pp. 21-37
    • Schmidt, R.1
  • 34
    • 0035060915 scopus 로고    scopus 로고
    • Comparative structural genomics in the Brassicaceae family
    • Schmidt R, Acarkan A, Boivin K (2001) Comparative structural genomics in the Brassicaceae family. Plant Physiol Biochem 39: 253-262
    • (2001) Plant Physiol Biochem , vol.39 , pp. 253-262
    • Schmidt, R.1    Acarkan, A.2    Boivin, K.3
  • 35
    • 3042621780 scopus 로고    scopus 로고
    • The sequence of the Arabidopsis genome as a tool for comparative structural genomics in Brassicaceae
    • T Nagata, S Tabata, eds, Brassica and Legumes. Springer-Verlag, Berlin Heidelberg
    • Schmidt R, Acarkan A, Boivin K, Clarenz O, Rossberg M (2003) The sequence of the Arabidopsis genome as a tool for comparative structural genomics in Brassicaceae. In T Nagata, S Tabata, eds, Biotechnology in Agriculture and Forestry, Vol 52: Brassica and Legumes. Springer-Verlag, Berlin Heidelberg, pp 19-36
    • (2003) Biotechnology in Agriculture and Forestry , vol.52 , pp. 19-36
    • Schmidt, R.1    Acarkan, A.2    Boivin, K.3    Clarenz, O.4    Rossberg, M.5
  • 36
    • 0005243581 scopus 로고    scopus 로고
    • A strategy for comparative physical mapping in cruciferous plants
    • LWD van Raamsdonk, JCM den Nijs, eds, Plant Evolution in Man-Made Habitats. Hugo de Vries Laboratory, University of Amsterdam, Amsterdam
    • Schmidt R, Acarkan A, Koch M, Rossberg M (1999) A strategy for comparative physical mapping in cruciferous plants. In LWD van Raamsdonk, JCM den Nijs, eds, Plant Evolution in Man-Made Habitats. Proceedings of the VIIth Symposium of the International Organization of Plant Biosystematists. Hugo de Vries Laboratory, University of Amsterdam, Amsterdam, pp 183-196
    • (1999) Proceedings of the VIIth Symposium of the International Organization of Plant Biosystematists , pp. 183-196
    • Schmidt, R.1    Acarkan, A.2    Koch, M.3    Rossberg, M.4
  • 38
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 sequences - A new tool for comparing protein and nucleotide sequences
    • Tatusova TA, Madden TL (1999) BLAST 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174: 247-250
    • (1999) FEMS Microbiol Lett , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 39
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision TJ, Brown DG, Tanksley SD (2000) The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 40
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
    • Yang Y-W, Lai K-N, Tai P-Y, Li W-H (1999) Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol 48: 597-604
    • (1999) J Mol Evol , vol.48 , pp. 597-604
    • Yang, Y.-W.1    Lai, K.-N.2    Tai, P.-Y.3    Li, W.-H.4


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