메뉴 건너뛰기




Volumn 28, Issue 8, 2011, Pages 2359-2369

Factors that contribute to variation in evolutionary rate among arabidopsis genes

Author keywords

gene duplication; gene expression; nonsynonymous substitution; synonymous substitution

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS LYRATA; ARTICLE; CHROMOSOME; EVOLUTIONARY RATE; GENE DUPLICATION; GENE EXPRESSION; GENE STRUCTURE; GENETIC VARIABILITY; MUTATION RATE; NONHUMAN; TISSUE SPECIFICITY;

EID: 79961064486     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr058     Document Type: Article
Times cited : (140)

References (77)
  • 3
    • 0031963946 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous substitutions in mammalian genes: Intragenic correlations
    • DOI 10.1007/PL00006281
    • Alvarez-Valin F, Jabbari K, Bernardi G. 1998. Synonymous and nonsynonymous substitutions in mammalian genes: intragenic correlations. J Mol Evol. 46:37-44. (Pubitemid 28047237)
    • (1998) Journal of Molecular Evolution , vol.46 , Issue.1 , pp. 37-44
    • Alvarez-Valin, F.1    Jabbari, K.2    Bernardi, G.3
  • 5
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • DOI 10.1101/gr.751803
    • Blanc G, Hokamp K, Wolfe KH. 2003. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13:137-144. (Pubitemid 36575763)
    • (2003) Genome Research , vol.13 , Issue.2 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 6
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during arabidopsis evolution
    • DOI 10.1105/tpc.021410
    • Blanc G, Wolfe KH. 2004. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell. 16:1679-1691. (Pubitemid 38908768)
    • (2004) Plant Cell , vol.16 , Issue.7 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 7
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • DOI 10.1038/nature01521
    • Bowers JE, Chapman BA, Rong J, Paterson AH. 2003. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422:433-438. (Pubitemid 36411396)
    • (2003) Nature , vol.422 , Issue.6930 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 8
    • 4444242626 scopus 로고    scopus 로고
    • Cis-Regulatory and protein evolution in orthologous and duplicate genes
    • DOI 10.1101/gr.2662504
    • Castillo-Davis CI, Hartl DL, Achaz G. 2004. cis-Regulatory and protein evolution in orthologous and duplicate genes. Genome Res. 14:1530-1536. (Pubitemid 39193403)
    • (2004) Genome Research , vol.14 , Issue.8 , pp. 1530-1536
    • Castillo-Davis, C.I.1    Hartl, D.L.2    Achaz, G.3
  • 9
    • 14644405053 scopus 로고    scopus 로고
    • Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence
    • DOI 10.1101/gr.3243305
    • Chin CS, Chuang JH, Li H. 2005. Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence. Genome Res. 15:205-213. (Pubitemid 40309384)
    • (2005) Genome Research , vol.15 , Issue.2 , pp. 205-213
    • Chin, C.-S.1    Chuang, J.H.2    Li, H.3
  • 11
    • 19344363466 scopus 로고    scopus 로고
    • Preferential duplication of conserved proteins in eukaryotic genomes
    • Davis JC, Petrov DA. 2004. Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol. 2:E55.
    • (2004) PLoS Biol. , vol.2
    • Davis, J.C.1    Petrov, D.A.2
  • 13
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rate of yeast protein evolution
    • DOI 10.1093/molbev/msj038
    • Drummond DA, Raval A, Wilke CO. 2006. A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol. 23:327-337. (Pubitemid 43100047)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3
  • 14
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
    • DOI 10.1016/j.cell.2008.05.042, PII S0092867408007058
    • Drummond DA, Wilke CO. 2008. Mistranslation-induced protein misfolding as a dominant contraint on coding-sequence evolution. Cell. 134:341-352. (Pubitemid 352010328)
    • (2008) Cell , vol.134 , Issue.2 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 15
    • 0033977618 scopus 로고    scopus 로고
    • Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
    • Duret L, Mouchiroud D. 2000. Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Mol Biol Evol. 17:68-74. (Pubitemid 30056993)
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.1 , pp. 68-74
    • Duret, L.1    Mouchiroud, D.2
  • 16
    • 70349682921 scopus 로고    scopus 로고
    • Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes
    • Edger PP, Pires JC. 2009. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res. 17:699-717.
    • (2009) Chromosome Res. , vol.17 , pp. 699-717
    • Edger, P.P.1    Pires, J.C.2
  • 17
    • 57149120510 scopus 로고    scopus 로고
    • Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
    • Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. 2008. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res. 18:1924-1937.
    • (2008) Genome Res. , vol.18 , pp. 1924-1937
    • Freeling, M.1    Lyons, E.2    Pedersen, B.3    Alam, M.4    Ming, R.5    Lisch, D.6
  • 18
    • 35348820582 scopus 로고    scopus 로고
    • Divergence in expression between duplicated genes in arabidopsis
    • DOI 10.1093/molbev/msm158
    • Ganko EW, Meyers BC, Vision TJ. 2007. Divergence in expression between duplicated genes in Arabidopsis. Mol Biol Evol. 24:2298-2309. (Pubitemid 47574728)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.10 , pp. 2298-2309
    • Ganko, E.W.1    Meyers, B.C.2    Vision, T.J.3
  • 19
    • 0035147066 scopus 로고    scopus 로고
    • Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses [3]
    • DOI 10.1101/gr.160601
    • Gaut BS. 2001. Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res. 11:55-66. (Pubitemid 32117953)
    • (2001) Genome Research , vol.11 , Issue.1 , pp. 55-66
    • Gaut, B.S.1
  • 20
    • 42549094998 scopus 로고    scopus 로고
    • Selection on major components of angiosperm genomes
    • DOI 10.1126/science.1153586
    • Gaut BS, Ross-Ibarra J. 2008. Selection on major components of angiosperm genomes. Science 320:484-486. (Pubitemid 351590630)
    • (2008) Science , vol.320 , Issue.5875 , pp. 484-486
    • Gaut, B.S.1    Ross-Ibarra, J.2
  • 21
    • 77953212314 scopus 로고    scopus 로고
    • The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
    • Gout JF, Kahn D, Duret L. 2010. The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. PLoS Genet. 6:e1000944.
    • (2010) PLoS Genet. , vol.6
    • Gout, J.F.1    Kahn, D.2    Duret, L.3
  • 22
    • 0038353717 scopus 로고    scopus 로고
    • Evolution of duplicate genes versus genetic robustness against null mutations
    • DOI 10.1016/S0168-9525(03)00139-2
    • Gu X. 2003. Evolution of duplicate genes versus genetic robustness against null mutations. Trends Genet. 19:354-356. (Pubitemid 36794533)
    • (2003) Trends in Genetics , vol.19 , Issue.7 , pp. 354-356
    • Gu, X.1
  • 25
    • 0035963414 scopus 로고    scopus 로고
    • Protein dispensability and rate of evolution
    • Hirsh AE, Fraser HB. 2001. Protein dispensability and rate of evolution. Nature 411:1046-1049.
    • (2001) Nature , vol.411 , pp. 1046-1049
    • Hirsh, A.E.1    Fraser, H.B.2
  • 26
    • 79955468851 scopus 로고    scopus 로고
    • The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    • 30 co-authors, in press
    • Hu TT, Pattyn P, Bakker EG, et al. (30 co-authors). 2011. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet. (in press).
    • (2011) Nat Genet.
    • Hu, T.T.1    Pattyn, P.2    Bakker, E.G.3
  • 27
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka R, Gentleman R. 1996. R: a language for data analysis and graphics. J Comput Graphical Stat. 5:299-314.
    • (1996) J Comput Graphical Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 28
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol. 2:13-34. (Pubitemid 15152046)
    • (1985) Molecular Biology and Evolution , vol.2 , Issue.1 , pp. 13-34
    • Ikemura, T.1
  • 31
    • 8744268628 scopus 로고    scopus 로고
    • Duplicated genes evolve slower than singletons despite the initial rate increase
    • Jordan IK, Wolf YI, Koonin EV. 2004. Duplicated genes evolve slower than singletons despite the initial rate increase. BMC Evol Biol. 4:22.
    • (2004) BMC Evol Biol. , vol.4 , pp. 22
    • Jordan, I.K.1    Wolf, Y.I.2    Koonin, E.V.3
  • 34
    • 17744376961 scopus 로고    scopus 로고
    • Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
    • DOI 10.1093/molbev/msi122
    • Lemos B, Bettencourt BR, Meiklejohn CD, Hartl DL. 2005. Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Mol Biol Evol. 22:1345-1354. (Pubitemid 40577773)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.5 , pp. 1345-1354
    • Lemos, B.1    Bettencourt, B.R.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 35
    • 0034748984 scopus 로고    scopus 로고
    • Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: Implications for understanding the mechanistic basis of the male mutation bias
    • Lercher MJ, Williams EJ, Hurst, LD. 2001. Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: implications for understanding the mechanistic basis of the male mutation bias. Mol Biol Evol. 18:2023-2029.
    • (2001) Mol Biol Evol. , vol.18 , pp. 2023-2029
    • Lercher, M.J.1    Williams, E.J.2    Hurst, L.D.3
  • 36
    • 33646882591 scopus 로고    scopus 로고
    • Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution
    • DOI 10.1093/molbev/msj119
    • Liao BY, Zhang J. 2006. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Mol Biol Evol. 23:1119-1128. (Pubitemid 43781587)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.6 , pp. 1119-1128
    • Liao, B.-Y.1    Zhang, J.2
  • 37
    • 77649250720 scopus 로고    scopus 로고
    • Universal distribution of protein evolution rates as a consequence of protein folding physics
    • Lobkovsky AE, Wolf YI, Koonin EV. 2010. Universal distribution of protein evolution rates as a consequence of protein folding physics. Proc Natl Acad Sci U S A. 107:2983-2988.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 2983-2988
    • Lobkovsky, A.E.1    Wolf, Y.I.2    Koonin, E.V.3
  • 38
    • 13144251179 scopus 로고    scopus 로고
    • Plant conserved non-coding sequences and paralogue evolution
    • DOI 10.1016/j.tig.2004.11.013, PII S0168952504003154
    • Lockton S, Gaut BS. 2005. Plant conserved non-coding sequences and paralogue evolution. Trends Genet. 21:60-65. (Pubitemid 40178851)
    • (2005) Trends in Genetics , vol.21 , Issue.1 , pp. 60-65
    • Lockton, S.1    Gaut, B.S.2
  • 40
    • 0031856647 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous substitution distances are correlated in mouse and rat genes
    • DOI 10.1007/PL00006367
    • Makalowski W, Boguski MS. 1998. Synonymous and nonsynonymous substitution distances are correlated in mouse and rat genes. J Mol Evol. 47:119-121. (Pubitemid 28373201)
    • (1998) Journal of Molecular Evolution , vol.47 , Issue.2 , pp. 119-121
    • Makalowski, W.1    Boguski, M.S.2    Hughes, A.L.3    Yeager, M.4
  • 41
    • 0035012056 scopus 로고    scopus 로고
    • Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans
    • Marais G, Duret L. 2001. Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans. J Mol Evol. 52:275-280.
    • (2001) J Mol Evol. , vol.52 , pp. 275-280
    • Marais, G.1    Duret, L.2
  • 43
    • 0036737630 scopus 로고    scopus 로고
    • Impact of the presence of paralogs on sequence divergence in a set of mousehuman orthologs
    • Nembaware V, Crum K, Kelso J, Seoighe C. 2002. Impact of the presence of paralogs on sequence divergence in a set of mousehuman orthologs. Genome Res. 12:1370-1376.
    • (2002) Genome Res. , vol.12 , pp. 1370-1376
    • Nembaware, V.1    Crum, K.2    Kelso, J.3    Seoighe, C.4
  • 44
    • 0035207792 scopus 로고    scopus 로고
    • Does the recombination rate affect the efficiency of purifying selection? The yeast genome provides a partial answer [1]
    • Pál C, Papp B, Hurst LD. 2001a. Does the recombination rate affect the efficiency of purifying selection? The yeast genome provides a partial answer. Mol Biol Evol. 18:2323-2326. (Pubitemid 33134362)
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.12 , pp. 2323-2326
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 45
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • Pál C, Papp B, Hurst LD. 2001b. Highly expressed genes in yeast evolve slowly. Genetics 158:927-931. (Pubitemid 32552328)
    • (2001) Genetics , vol.158 , Issue.2 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 46
    • 33646182934 scopus 로고    scopus 로고
    • An integrated view of protein evolution
    • Pál C, Papp B, Lercher MJ. 2006. An integrated view of protein evolution. Nat Rev Genet 7:337-348.
    • (2006) Nat Rev Genet. , vol.7 , pp. 337-348
    • Pál, C.1    Papp, B.2    Lercher, M.J.3
  • 47
    • 34548357121 scopus 로고    scopus 로고
    • Assessing the determinants of evolutionary rates in the presence of noise
    • DOI 10.1093/molbev/msm044
    • Plotkin JB, Fraser HB. 2007. Assessing the determinants of evolutionary rates in the presence of noise. Mol Biol Evol. 24:1113-1121. (Pubitemid 47343649)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.5 , pp. 1113-1121
    • Plotkin, J.B.1    Fraser, H.B.2
  • 48
    • 28944434076 scopus 로고    scopus 로고
    • Protein function, connectivity, and duplicability in yeast
    • DOI 10.1093/molbev/msi249
    • Prachumwat A, Li WH. 2006. Protein function, connectivity, and duplicability in yeast. Mol Biol Evol. 23:30-39. (Pubitemid 41785950)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.1 , pp. 30-39
    • Prachumwat, A.1    Li, W.-H.2
  • 49
    • 34548595490 scopus 로고    scopus 로고
    • MareyMap: An R-based tool with graphical interface for estimating recombination rates
    • DOI 10.1093/bioinformatics/btm315
    • Rezvoy C, Charif D, Gueguen L, Marais GAB. 2007. MareyMap: an R-based tool with graphical interface for estimating recombination rates. Bioinformatics 23:2188-2189. (Pubitemid 47394123)
    • (2007) Bioinformatics , vol.23 , Issue.16 , pp. 2188-2189
    • Rezvoy, C.1    Charif, D.2    Gueguen, L.3    Marais, G.A.B.4
  • 50
    • 33749357831 scopus 로고    scopus 로고
    • Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
    • Rizzon C, Ponger L, Gaut BS. 2006. Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol. 2:e115.
    • (2006) PLoS Comput Biol. , vol.2
    • Rizzon, C.1    Ponger, L.2    Gaut, B.S.3
  • 51
    • 33746237576 scopus 로고    scopus 로고
    • The quest for the universals of protein evolution
    • DOI 10.1016/j.tig.2006.06.004, PII S0168952506001727
    • Rocha EP. 2006. The quest for the universals of protein evolution. Trends Genet. 22:412-416. (Pubitemid 44093768)
    • (2006) Trends in Genetics , vol.22 , Issue.8 , pp. 412-416
    • Rocha, E.P.C.1
  • 52
    • 1242284655 scopus 로고    scopus 로고
    • An analysis of determinants of amino acids substitution rates in bacterial proteins
    • DOI 10.1093/molbev/msh004
    • Rocha EP, Danchin A. 2004. An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol. 21:108-116. (Pubitemid 38233524)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.1 , pp. 108-116
    • Rocha, E.P.C.1    Danchin, A.2
  • 53
    • 0032962457 scopus 로고    scopus 로고
    • Twilight zone of protein sequence alignments
    • Rost B. 1999. Twilight zone of protein sequence alignments. Protein Eng. 12:85-94. (Pubitemid 29103686)
    • (1999) Protein Engineering , vol.12 , Issue.2 , pp. 85-94
    • Rost, B.1
  • 54
    • 33644907774 scopus 로고    scopus 로고
    • The effect of multifunctionality on the rate of evolution in yeast
    • Salathe M, Ackermann M, Bonhoeffer S. 2006. The effect of multifunctionality on the rate of evolution in yeast. Mol Biol Evol. 23:721-722.
    • (2006) Mol Biol Evol. , vol.23 , pp. 721-722
    • Salathe, M.1    Ackermann, M.2    Bonhoeffer, S.3
  • 56
    • 33745478966 scopus 로고    scopus 로고
    • Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
    • DOI 10.1105/tpc.106.041111
    • Schranz ME, Mitchell-Olds T. 2006. Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. Plant Cell. 18:1152-1165. (Pubitemid 43956122)
    • (2006) Plant Cell , vol.18 , Issue.5 , pp. 1152-1165
    • Schranz, M.E.1    Mitchell-Olds, T.2
  • 57
    • 0023274170 scopus 로고
    • The Rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
    • Sharp PM, Li WH. 1987. The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol Biol Evol. 4:222-230. (Pubitemid 17116760)
    • (1987) Molecular Biology and Evolution , vol.4 , Issue.3 , pp. 222-230
    • Sharp, P.M.1    Li, W.-H.2
  • 59
    • 33749380600 scopus 로고    scopus 로고
    • A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization
    • Singer T, Fan Y, Chang HS, Zhu T, Hazen SP, Briggs SP. 2006. A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization. PLoS Genet. 2(9):e144.
    • (2006) PLoS Genet. , vol.2 , Issue.9
    • Singer, T.1    Fan, Y.2    Chang, H.S.3    Zhu, T.4    Hazen, S.P.5    Briggs, S.P.6
  • 60
    • 0032714307 scopus 로고    scopus 로고
    • The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents
    • Smith NG, Hurst LD. 1999. The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents. Genetics 153:1395-1402. (Pubitemid 29522150)
    • (1999) Genetics , vol.153 , Issue.3 , pp. 1395-1402
    • Smith, N.G.C.1    Hurst, L.D.2
  • 61
    • 67651052323 scopus 로고    scopus 로고
    • The role of hybridization in plant speciation
    • Soltis PS, Soltis DE. 2009. The role of hybridization in plant speciation. Annu Rev Plant Biol. 60:561-588.
    • (2009) Annu Rev Plant Biol. , vol.60 , pp. 561-588
    • Soltis, P.S.1    Soltis, D.E.2
  • 62
    • 5044252972 scopus 로고    scopus 로고
    • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
    • DOI 10.1534/genetics.104.028944
    • Subramanian S, Kumar S. 2004. Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Genetics. 168:373-381. (Pubitemid 39346602)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 373-381
    • Subramanian, S.1    Kumar, S.2
  • 63
    • 0036100820 scopus 로고    scopus 로고
    • Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis
    • DOI 10.1007/s0023901-0074-1
    • Tiffin P, Hahn MW. 2002. Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis. J Mol Evol. 54:746-753. (Pubitemid 34553640)
    • (2002) Journal of Molecular Evolution , vol.54 , Issue.6 , pp. 746-753
    • Tiffin, P.1    Hahn, M.W.2
  • 64
    • 0035671698 scopus 로고    scopus 로고
    • Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection
    • Urrutia AO, Hurst LD. 2001. Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection. Genetics 159:1191-1199. (Pubitemid 34033460)
    • (2001) Genetics , vol.159 , Issue.3 , pp. 1191-1199
    • Urrutia, A.O.1    Hurst, L.D.2
  • 65
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • DOI 10.1126/science.290.5499.2114
    • Vision TJ, Brown DG, Tanksley SD. 2000. The origins of genomic duplications in Arabidopsis. Science 290:2114-2117. (Pubitemid 32001585)
    • (2000) Science , vol.290 , Issue.5499 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 67
  • 68
    • 77951543804 scopus 로고    scopus 로고
    • Functional bias in molecular evolution rate of Arabidopsis thaliana
    • Warren AS, Anandakrishnan R, Zhang L. 2010. Functional bias in molecular evolution rate of Arabidopsis thaliana. BMC Evol Biol. 10:125.
    • (2010) BMC Evol Biol. , vol.10 , pp. 125
    • Warren, A.S.1    Anandakrishnan, R.2    Zhang, L.3
  • 69
    • 4143122090 scopus 로고    scopus 로고
    • Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata
    • DOI 10.1093/molbev/msh191
    • Wright SI, Yau CB, Looseley M, Meyers BC. 2004. Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. Mol Biol Evol. 21:1719-1726. (Pubitemid 39096888)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.9 , pp. 1719-1726
    • Wright, S.I.1    Yau, C.B.K.2    Looseley, M.3    Meyers, B.C.4
  • 71
    • 0038708556 scopus 로고    scopus 로고
    • Rate of protein evolution versus fitness effect of gene deletion
    • DOI 10.1093/molbev/msg078
    • Yang J, Gu Z, Li WH. 2003. Rate of protein evolution versus fitness effect of gene deletion. Mol Biol Evol. 20:772-774. (Pubitemid 36539013)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.5 , pp. 772-774
    • Yang, J.1    Gu, Z.2    Li, W.-H.3
  • 72
    • 79952131885 scopus 로고    scopus 로고
    • Lowly-expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation
    • Yang L, Takuno S, Waters ER, Gaut BS. 2011. Lowly-expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation. Mol Biol Evol. 28:1193-1203.
    • (2011) Mol Biol Evol. , vol.28 , pp. 1193-1203
    • Yang, L.1    Takuno, S.2    Waters, E.R.3    Gaut, B.S.4
  • 73
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556. (Pubitemid 27480216)
    • (1997) Computer Applications in the Biosciences , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.1
  • 75
    • 1542286776 scopus 로고    scopus 로고
    • Mammalian housekeeping genes evolve more slowly than tissue-specific genes
    • Zhang LQ, Li WH. 2004. Mammalian housekeeping genes evolve more slowly than tissue-specific genes. Mol Biol Evol. 21:236-239.
    • (2004) Mol Biol Evol. , vol.21 , pp. 236-239
    • Zhang, L.Q.1    Li, W.H.2
  • 76
    • 0036726239 scopus 로고    scopus 로고
    • Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana
    • Zhang LQ, Vision TJ, Gaut BS. 2002. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Mol Biol Evol. 19:1464-1473. (Pubitemid 36752771)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.9 , pp. 1464-1473
    • Zhang, L.1    Vision, T.J.2    Gaut, B.S.3
  • 77
    • 0017227120 scopus 로고
    • Evolutionary processes and evolutionary noise at the molecular level. I. Functional density in proteins
    • Zuckerkandl E. 1976. Evolutionary processes and evolutionary noise at the molecular level. I. Functional density in proteins. J Mol Evol. 7:167-183.
    • (1976) J Mol Evol. , vol.7 , pp. 167-183
    • Zuckerkandl, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.