-
1
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
Akashi, H. 1995. Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139:1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
2
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
-
-. 1996. Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics 144:1297-1307.
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
-
3
-
-
0032953881
-
Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
-
-. 1999. Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 151:221-238.
-
(1999)
Genetics
, vol.151
, pp. 221-238
-
-
-
4
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
Akashi, H., and S. W. Schaeffer. 1997. Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146:295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
5
-
-
0035546073
-
Adaptive hitchhiking effects on genome variability
-
Andolfatto, P. 2001. Adaptive hitchhiking effects on genome variability. Curr. Opin. Genet. Dev. 11:635-641.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 635-641
-
-
Andolfatto, P.1
-
6
-
-
0033828706
-
A genome-wide departure from the standard neutral model in natural populations of Drosophila
-
Andolfatto, P., and M. Przeworski. 2000. A genome-wide departure from the standard neutral model in natural populations of Drosophila. Genetics 156:257-268.
-
(2000)
Genetics
, vol.156
, pp. 257-268
-
-
Andolfatto, P.1
Przeworski, M.2
-
7
-
-
0034012339
-
Estimating multilocus linkage disequilibria
-
Barton, N. H. 2000. Estimating multilocus linkage disequilibria. Heredity 84:373-389.
-
(2000)
Heredity
, vol.84
, pp. 373-389
-
-
Barton, N.H.1
-
8
-
-
0034938613
-
The frequency distribution of nucleotide variation in Drosophila simulans
-
Begun, D. 2001. The frequency distribution of nucleotide variation in Drosophila simulans. Mol. Biol. Evol. 18:1343-1352.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1343-1352
-
-
Begun, D.1
-
9
-
-
0026529344
-
Levels of naturally occuring DNA polymorphism correlate with recombination rates in D. melanogaster
-
Begun, D. J., and C. F. Aquadro. 1992. Levels of naturally occuring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356:519-520.
-
(1992)
Nature
, vol.356
, pp. 519-520
-
-
Begun, D.J.1
Aquadro, C.F.2
-
10
-
-
0028348142
-
Neutralism and selectionism face up to DNA data
-
Brookfield, J. J. Y., and P. M. Sharp. 1994. Neutralism and selectionism face up to DNA data. Trends Genet. 10:109-111.
-
(1994)
Trends Genet.
, vol.10
, pp. 109-111
-
-
Brookfield, J.J.Y.1
Sharp, P.M.2
-
11
-
-
0037041421
-
The cost of inbreeding in Arabidopsis
-
Bustamante, C. D., R. Nielsen, S. A. Sawyer, K. M. Olsen, M. D. Purugganan, and D. L. Hartl. 2002. The cost of inbreeding in Arabidopsis. Nature 416:531-534.
-
(2002)
Nature
, vol.416
, pp. 531-534
-
-
Bustamante, C.D.1
Nielsen, R.2
Sawyer, S.A.3
Olsen, K.M.4
Purugganan, M.D.5
Hartl, D.L.6
-
12
-
-
0032991552
-
Characterization of single-nucleotide polymorphisms in coding regions of human genes
-
17 co-authors
-
Cargill, M., D. Altshuler, J. Irel et al. (17 co-authors). 1999. Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat. Genet. 22:231-238.
-
(1999)
Nat. Genet.
, vol.22
, pp. 231-238
-
-
Cargill, M.1
Altshuler, D.2
Irel, J.3
-
13
-
-
0017809894
-
Statistical studies on protein polymorphism in natural population. II. Gene differentiation between populations
-
Chakraborty, R., P. A. Fuerst, and M. Nei. 1978. Statistical studies on protein polymorphism in natural population. II. Gene differentiation between populations. Genetics 88: 367-390.
-
(1978)
Genetics
, vol.88
, pp. 367-390
-
-
Chakraborty, R.1
Fuerst, P.A.2
Nei, M.3
-
14
-
-
0028222304
-
The effect of background selection against deleterious mutations on weakly selected, linked variants
-
Charlesworth, B. 1994. The effect of background selection against deleterious mutations on weakly selected, linked variants. Genet. Res. 63:213-227.
-
(1994)
Genet. Res.
, vol.63
, pp. 213-227
-
-
Charlesworth, B.1
-
16
-
-
0036961560
-
Changing effective population size and the McDonald-Kreitman test
-
Eyre-Walker, A. 2002. Changing effective population size and the McDonald-Kreitman test. Genetics 162:2017-2024.
-
(2002)
Genetics
, vol.162
, pp. 2017-2024
-
-
Eyre-Walker, A.1
-
17
-
-
0036900082
-
Quantifying the slightly deleterious mutation model of molecular evolution
-
Eyre-Walker, A., P. D. Keightley, N. G. C. Smith, and D. Gaffney. 2002. Quantifying the slightly deleterious mutation model of molecular evolution. Mol. Biol. Evol. 19:2142-2149.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2142-2149
-
-
Eyre-Walker, A.1
Keightley, P.D.2
Smith, N.G.C.3
Gaffney, D.4
-
18
-
-
0034924997
-
Positive and negative selection on the human genome
-
Fay, J. C., G. J. Wycoff, and C.-I. Wu. 2001. Positive and negative selection on the human genome. Genetics 158:1227-1234.
-
(2001)
Genetics
, vol.158
, pp. 1227-1234
-
-
Fay, J.C.1
Wycoff, G.J.2
Wu, C.-I.3
-
19
-
-
0037186608
-
Testing the neutral theory of molecular evolution with genomic data from Drosophila
-
-. 2002. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 415:1024-1026.
-
(2002)
Nature
, vol.415
, pp. 1024-1026
-
-
-
20
-
-
0035546129
-
The neutral theory in the genomic era
-
Fay, J. C., and C. I. Wu. 2001. The neutral theory in the genomic era. Curr. Opin. Genet. Dev. 11:642-6.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 642-646
-
-
Fay, J.C.1
Wu, C.I.2
-
21
-
-
0028168856
-
A codon based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman, N., and Z. Yang. 1994. A codon based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:725-736.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
22
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill, W. G., and A. Robertson. 1968. Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38:226-231.
-
(1968)
Theor. Appl. Genet.
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
23
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura, T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2:13-34.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
24
-
-
0033927343
-
Joint effects of genetic hitchhiking and background selection on neutral variation
-
Kim, Y., and W. Stephan. 2000. Joint effects of genetic hitchhiking and background selection on neutral variation. Genetics 155:1415-1427.
-
(2000)
Genetics
, vol.155
, pp. 1415-1427
-
-
Kim, Y.1
Stephan, W.2
-
25
-
-
0038192127
-
Selective sweeps in the presence of interference among partially linked loci
-
-. 2003. Selective sweeps in the presence of interference among partially linked loci. Genetics 164:389-398.
-
(2003)
Genetics
, vol.164
, pp. 389-398
-
-
-
27
-
-
0015220547
-
Protein polymorphisn as a phase of molecular evolution
-
Kimura, M., and T. Ohta. 1971. Protein polymorphisn as a phase of molecular evolution. Nature 229:467-469.
-
(1971)
Nature
, vol.229
, pp. 467-469
-
-
Kimura, M.1
Ohta, T.2
-
29
-
-
0032829163
-
Recent selection on synonymous codon usage in Drosophila
-
Kliman, R. 1999. Recent selection on synonymous codon usage in Drosophila. J. Mol. Evol. 49:343-351.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 343-351
-
-
Kliman, R.1
-
30
-
-
0029200909
-
Molecular evidence for natural selection
-
Kreitman, M., and H. Akashi. 1995. Molecular evidence for natural selection. Annu. Rev. Ecol. Syst. 26:403-422.
-
(1995)
Annu. Rev. Ecol. Syst.
, vol.26
, pp. 403-422
-
-
Kreitman, M.1
Akashi, H.2
-
31
-
-
0036948339
-
Directions in evolutionary biology
-
Lewontin, R. C. 2002. Directions in evolutionary biology. Annu. Rev. Genet. 36:1-18.
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 1-18
-
-
Lewontin, R.C.1
-
32
-
-
0033178244
-
Paleo-demography of the Drosophila melanogaster subgroup: Application of the maximum likelihood method
-
Li, Y. J., Y. Satta, and N. Takahata. 1999. Paleo-demography of the Drosophila melanogaster subgroup: application of the maximum likelihood method. Genes Genet. Syst. 74:117-127.
-
(1999)
Genes Genet. Syst.
, vol.74
, pp. 117-127
-
-
Li, Y.J.1
Satta, Y.2
Takahata, N.3
-
34
-
-
0026428610
-
Adaptive evolution at the Adh locus in Drosophila
-
McDonald, J. H., and M. Kreitman. 1991. Adaptive evolution at the Adh locus in Drosophila. Nature 351:652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
35
-
-
0035157374
-
Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila
-
McVean, G., and J. Vieira. 2001. Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila. Genetics 157:245-257.
-
(2001)
Genetics
, vol.157
, pp. 245-257
-
-
McVean, G.1
Vieira, J.2
-
36
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis, N., A. Rosenbluth, M. Rosenbluth, A. Teller, and E. Teller. 1954. Equation of state calculations by fast computing machines. J. Chem. Phys. 21:1087-1095.
-
(1954)
J. Chem. Phys.
, vol.21
, pp. 1087-1095
-
-
Metropolis, N.1
Rosenbluth, A.2
Rosenbluth, M.3
Teller, A.4
Teller, E.5
-
37
-
-
0030034357
-
Intraspecific nuclear DNA variation in Drosophila
-
Moriyama, E. N., and J. R. Powell. 1996. Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13:261-277.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 261-277
-
-
Moriyama, E.N.1
Powell, J.R.2
-
38
-
-
0031770039
-
DNA variability and recombination rates at X-linked loci in humans
-
Nachman, M. W., V. L. Bauer, S. L. Crowell, and C. F. Aquadro. 1998. DNA variability and recombination rates at X-linked loci in humans. Genetics 150:1133-1141.
-
(1998)
Genetics
, vol.150
, pp. 1133-1141
-
-
Nachman, M.W.1
Bauer, V.L.2
Crowell, S.L.3
Aquadro, C.F.4
-
39
-
-
0031267307
-
The mean and variance of the number of segregating sites since the last hitchhiking event
-
Perlitz, M., and W. Stephan. 1997. The mean and variance of the number of segregating sites since the last hitchhiking event. J. Math. Biol. 36:1-23.
-
(1997)
J. Math. Biol.
, vol.36
, pp. 1-23
-
-
Perlitz, M.1
Stephan, W.2
-
40
-
-
0030861159
-
Evolution of codon usage bias in Drosophila
-
Powell, J. R., and E. N. Moriyama. 1997. Evolution of codon usage bias in Drosophila. Proc. Natl. Acad. Sci. USA 94:7784-7790.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7784-7790
-
-
Powell, J.R.1
Moriyama, E.N.2
-
41
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
Rozas, J., and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
42
-
-
0026460082
-
Population genetics of polymorphism and divergence
-
Sawyer, S. A., and D. L. Hartl. 1992. Population genetics of polymorphism and divergence. Genetics 132:1161-1176.
-
(1992)
Genetics
, vol.132
, pp. 1161-1176
-
-
Sawyer, S.A.1
Hartl, D.L.2
-
43
-
-
0024116811
-
"Silent" sites in Drosophila are not neutral: Evidence of selection among synonymous codons
-
Shields, D. C., P. M. Sharp, D. G. Higgins, and F. Wright. 1988. "Silent" sites in Drosophila are not neutral: evidence of selection among synonymous codons. Mol. Biol. Evol. 5:704-716.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
Wright, F.4
-
44
-
-
0019996130
-
Correlations between heterozygosity and evolutionary rate of proteins
-
Skibinski, D. O. F., and R. D. Ward. 1982. Correlations between heterozygosity and evolutionary rate of proteins. Nature 298:490-492.
-
(1982)
Nature
, vol.298
, pp. 490-492
-
-
Skibinski, D.O.F.1
Ward, R.D.2
-
45
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
Smith, N. G. C., and A. Eyre-Walker. 2002. Adaptive protein evolution in Drosophila. Nature 415:1022-1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
46
-
-
0029096510
-
An improved method for estimating the rate of fixation of favourable mutations based on DNA polymorphism data
-
Stephan, W. 1995. An improved method for estimating the rate of fixation of favourable mutations based on DNA polymorphism data. Mol. Biol. Evol. 12:959-962.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 959-962
-
-
Stephan, W.1
-
47
-
-
3042684874
-
Recent applications of diffusion theory to population genetics
-
M. Slatkin and M. Veuille, eds. Oxford University Press, Oxford, UK
-
Stephan, W., and Y. Kim. 2002. Recent applications of diffusion theory to population genetics. Pp. 72-93 in M. Slatkin and M. Veuille, eds. Modern developments in theoretical population genetics, the legacy of Gustave Malecot. Oxford University Press, Oxford, UK.
-
(2002)
Modern Developments in Theoretical Population Genetics, the Legacy of Gustave Malecot
, pp. 72-93
-
-
Stephan, W.1
Kim, Y.2
-
48
-
-
0013272874
-
Pre-speciation coalescence and the effective size of ancestral populations
-
M. Slatkin and M. Veuille, eds. Oxford University Press, Oxford, UK
-
Takahata, N., and Y. Satta. 2002. Pre-speciation coalescence and the effective size of ancestral populations. Pp. 52-71 in M. Slatkin and M. Veuille, eds. Modern developments in theoretical population genetics, the legacy of Gustave Malecot. Oxford University Press, Oxford, UK.
-
(2002)
Modern Developments in Theoretical Population Genetics, the Legacy of Gustave Malecot
, pp. 52-71
-
-
Takahata, N.1
Satta, Y.2
-
49
-
-
0036743513
-
Testing models of selection and demography in Drosophila simulans
-
Wall, J. D., P. Andolfatto, and M. Przeworski. 2002. Testing models of selection and demography in Drosophila simulans. Genetics 162:203-216.
-
(2002)
Genetics
, vol.162
, pp. 203-216
-
-
Wall, J.D.1
Andolfatto, P.2
Przeworski, M.3
-
50
-
-
0027235978
-
Analysis of a genetic hitch-hiking model, and its application to DNA polymorphism data from Drosophila melanogaster
-
Wiehe, T., and W. Stephan. 1993. Analysis of a genetic hitch-hiking model, and its application to DNA polymorphism data from Drosophila melanogaster. Mol. Biol. Evol. 10:842-854.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 842-854
-
-
Wiehe, T.1
Stephan, W.2
-
52
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
54
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang, Z., R. Nielsen, N. Goldman, and A. M. Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
|