-
1
-
-
84871825481
-
Insulator-like pairing elements regulate silencing and mutually exclusive expression in the malaria parasite Plasmodium falciparum
-
Avraham, I., Schreier, J., and Dzikowski, R. (2012) Insulator-like pairing elements regulate silencing and mutually exclusive expression in the malaria parasite Plasmodium falciparum. Proc Natl Acad Sci USA 109: E3678-E3686.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Avraham, I.1
Schreier, J.2
Dzikowski, R.3
-
2
-
-
0034307484
-
A brief illustrated guide to the ultrastructure of Plasmodium falciparum asexual blood stages
-
Bannister, L., Hopkins, J., Fowler, R., Krishna, S., and Mitchell, G. (2000) A brief illustrated guide to the ultrastructure of Plasmodium falciparum asexual blood stages. Parasitol Today 16: 427-433.
-
(2000)
Parasitol Today
, vol.16
, pp. 427-433
-
-
Bannister, L.1
Hopkins, J.2
Fowler, R.3
Krishna, S.4
Mitchell, G.5
-
3
-
-
78651238244
-
H2A.Z demarcates intergenic regions of the Plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3
-
Bártfai, R., Hoeijmakers, W.A.M., Salcedo-Amaya, A.M., Smits, A.H., Janssen-Megens, E., Kaan, A., etal. (2010) H2A.Z demarcates intergenic regions of the Plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3. PLoS Pathog 6: e1001223.
-
(2010)
PLoS Pathog
, vol.6
-
-
Bártfai, R.1
Hoeijmakers, W.A.M.2
Salcedo-Amaya, A.M.3
Smits, A.H.4
Janssen-Megens, E.5
Kaan, A.6
-
4
-
-
0029052741
-
Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes
-
Baruch, D.I., Pasloske, B.L., Singh, H.B., Bi, X., Ma, X.C., Feldman, M., etal. (1995) Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes. Cell 82: 77-87.
-
(1995)
Cell
, vol.82
, pp. 77-87
-
-
Baruch, D.I.1
Pasloske, B.L.2
Singh, H.B.3
Bi, X.4
Ma, X.C.5
Feldman, M.6
-
5
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol 57: 289-300.
-
(1995)
J R Stat Soc Ser B Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
4243071596
-
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
-
Bozdech, Z., Llinás, M., Pulliam, B.L., Wong, E.D., Zhu, J., and DeRisi, J.L. (2003) The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 1: e5.
-
(2003)
PLoS Biol
, vol.1
-
-
Bozdech, Z.1
Llinás, M.2
Pulliam, B.L.3
Wong, E.D.4
Zhu, J.5
DeRisi, J.L.6
-
7
-
-
58549092612
-
Mapping of class I and class II odorant receptors to glomerular domains by two distinct types of olfactory sensory neurons in the mouse
-
Bozza, T., Vassalli, A., Fuss, S., Zhang, J.-J., Weiland, B., Pacifico, R., etal. (2009) Mapping of class I and class II odorant receptors to glomerular domains by two distinct types of olfactory sensory neurons in the mouse. Neuron 61: 220-233.
-
(2009)
Neuron
, vol.61
, pp. 220-233
-
-
Bozza, T.1
Vassalli, A.2
Fuss, S.3
Zhang, J.-J.4
Weiland, B.5
Pacifico, R.6
-
8
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
Branco, M.R., and Pombo, A. (2006) Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 4: e138.
-
(2006)
PLoS Biol
, vol.4
-
-
Branco, M.R.1
Pombo, A.2
-
9
-
-
79959284685
-
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs
-
Broadbent, K.M., Park, D., Wolf, A.R., Van Tyne, D., Sims, J.S., Riback, U., etal. (2011) A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biol 12: R56.
-
(2011)
Genome Biol
, vol.12
-
-
Broadbent, K.M.1
Park, D.2
Wolf, A.R.3
Van Tyne, D.4
Sims, J.S.5
Riback, U.6
-
10
-
-
0141483283
-
Plasmodium falciparum var genes are regulated by two regions with separate promoters, one upstream of the coding region and a second within the intron
-
Calderwood, M.S., Gannoun-Zaki, L., Wellems, T.E., and Deitsch, K.W. (2003) Plasmodium falciparum var genes are regulated by two regions with separate promoters, one upstream of the coding region and a second within the intron. J Biol Chem 278: 34125-34132.
-
(2003)
J Biol Chem
, vol.278
, pp. 34125-34132
-
-
Calderwood, M.S.1
Gannoun-Zaki, L.2
Wellems, T.E.3
Deitsch, K.W.4
-
11
-
-
33846523065
-
Epigenetic memory at malaria virulence genes
-
Chookajorn, T., Dzikowski, R., Frank, M., Li, F., Jiwani, A.Z., Hartl, D.L., and Deitsch, K.W. (2007) Epigenetic memory at malaria virulence genes. Proc Natl Acad Sci USA 104: 899-902.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 899-902
-
-
Chookajorn, T.1
Dzikowski, R.2
Frank, M.3
Li, F.4
Jiwani, A.Z.5
Hartl, D.L.6
Deitsch, K.W.7
-
12
-
-
84869002200
-
Nuclear aggregation of olfactory receptor genes governs their monogenic expression
-
Clowney, E.J., LeGros, M.A., Mosley, C.P., Clowney, F.G., Markenskoff-Papadimitriou, E.C., Myllys, M., etal. (2012) Nuclear aggregation of olfactory receptor genes governs their monogenic expression. Cell 151: 724-737.
-
(2012)
Cell
, vol.151
, pp. 724-737
-
-
Clowney, E.J.1
LeGros, M.A.2
Mosley, C.P.3
Clowney, F.G.4
Markenskoff-Papadimitriou, E.C.5
Myllys, M.6
-
13
-
-
0035974802
-
Malaria: cooperative silencing elements in var genes
-
Deitsch, K.W., Calderwood, M.S., and Wellems, T.E. (2001) Malaria: cooperative silencing elements in var genes. Nature 412: 875-876.
-
(2001)
Nature
, vol.412
, pp. 875-876
-
-
Deitsch, K.W.1
Calderwood, M.S.2
Wellems, T.E.3
-
14
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker, J., Rippe, K., Dekker, M., and Kleckner, N. (2002) Capturing chromosome conformation. Science 295: 1306-1311.
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
15
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Duan, Z., Andronescu, M., Schutz, K., McIlwain, S., Kim, Y.J., Lee, C., etal. (2010) A three-dimensional model of the yeast genome. Nature 465: 363-367.
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
Andronescu, M.2
Schutz, K.3
McIlwain, S.4
Kim, Y.J.5
Lee, C.6
-
16
-
-
20144389848
-
Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum
-
Duraisingh, M.T., Voss, T.S., Marty, A.J., Duffy, M.F., Good, R.T., Thompson, J.K., etal. (2005) Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum. Cell 121: 13-24.
-
(2005)
Cell
, vol.121
, pp. 13-24
-
-
Duraisingh, M.T.1
Voss, T.S.2
Marty, A.J.3
Duffy, M.F.4
Good, R.T.5
Thompson, J.K.6
-
17
-
-
33645777010
-
Mutually exclusive expression of virulence genes by malaria parasites is regulated independently of antigen production
-
Dzikowski, R., Frank, M., and Deitsch, K. (2006) Mutually exclusive expression of virulence genes by malaria parasites is regulated independently of antigen production. PLoS Pathog 2: e22.
-
(2006)
PLoS Pathog
, vol.2
-
-
Dzikowski, R.1
Frank, M.2
Deitsch, K.3
-
18
-
-
34848872590
-
Mechanisms underlying mutually exclusive expression of virulence genes by malaria parasites
-
Dzikowski, R., Li, F., Amulic, B., Eisberg, A., Frank, M., Patel, S., etal. (2007) Mechanisms underlying mutually exclusive expression of virulence genes by malaria parasites. EMBO Rep 8: 959.
-
(2007)
EMBO Rep
, vol.8
, pp. 959
-
-
Dzikowski, R.1
Li, F.2
Amulic, B.3
Eisberg, A.4
Frank, M.5
Patel, S.6
-
19
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz, M.B., Levine, A.J., Siggia, E.D., and Swain, P.S. (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
20
-
-
0034718886
-
Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum
-
Freitas-Junior, L.H., Bottius, E., Pirrit, L.A., Deitsch, K.W., Scheidig, C., Guinet, F., etal. (2000) Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum. Nature 407: 1018-1022.
-
(2000)
Nature
, vol.407
, pp. 1018-1022
-
-
Freitas-Junior, L.H.1
Bottius, E.2
Pirrit, L.A.3
Deitsch, K.W.4
Scheidig, C.5
Guinet, F.6
-
21
-
-
20144389331
-
Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites
-
Freitas-Junior, L.H., Hernandez-Rivas, R., Ralph, S.A., Montiel-Condado, D., Ruvalcaba-Salazar, O.K., Rojas-Meza, A.P., etal. (2005) Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites. Cell 121: 25-36.
-
(2005)
Cell
, vol.121
, pp. 25-36
-
-
Freitas-Junior, L.H.1
Hernandez-Rivas, R.2
Ralph, S.A.3
Montiel-Condado, D.4
Ruvalcaba-Salazar, O.K.5
Rojas-Meza, A.P.6
-
22
-
-
84860381688
-
Higher-order chromatin structure: bridging physics and biology
-
Fudenberg, G., and Mirny, L.A. (2012) Higher-order chromatin structure: bridging physics and biology. Curr Opin Genet Dev 22: 115-124.
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 115-124
-
-
Fudenberg, G.1
Mirny, L.A.2
-
23
-
-
70449103609
-
An oestrogen-receptor-α-bound human chromatin interactome
-
Fullwood, M.J., Liu, M.H., Pan, Y.F., Liu, J., Xu, H., Mohamed, Y.B., etal. (2009) An oestrogen-receptor-α-bound human chromatin interactome. Nature 462: 58-64.
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
-
24
-
-
34447510932
-
Local and cis effects of the H element on expression of odorant receptor genes in mouse
-
Fuss, S.H., Omura, M., and Mombaerts, P. (2007) Local and cis effects of the H element on expression of odorant receptor genes in mouse. Cell 130: 373-384.
-
(2007)
Cell
, vol.130
, pp. 373-384
-
-
Fuss, S.H.1
Omura, M.2
Mombaerts, P.3
-
25
-
-
57149109574
-
A genetically hard-wired metabolic transcriptome in Plasmodium falciparum fails to mount protective responses to lethal antifolates
-
Ganesan, K., Ponmee, N., Jiang, L., Fowble, J.W., White, J., Kamchonwongpaisan, S., etal. (2008) A genetically hard-wired metabolic transcriptome in Plasmodium falciparum fails to mount protective responses to lethal antifolates. PLoS Pathog 4: e1000214.
-
(2008)
PLoS Pathog
, vol.4
-
-
Ganesan, K.1
Ponmee, N.2
Jiang, L.3
Fowble, J.W.4
White, J.5
Kamchonwongpaisan, S.6
-
26
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., etal. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419: 498-511.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
-
27
-
-
79955424413
-
Mitosis in the human malaria parasite Plasmodium falciparum
-
Gerald, N., Mahajan, B., and Kumar, S. (2011) Mitosis in the human malaria parasite Plasmodium falciparum. Eukaryot Cell 10: 474-482.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 474-482
-
-
Gerald, N.1
Mahajan, B.2
Kumar, S.3
-
28
-
-
84956136196
-
Crumpled globule model of the three-dimensional structure of DNA
-
Grosberg, A., Rabin, Y., Havlin, S., and Neer, A. (1993) Crumpled globule model of the three-dimensional structure of DNA. Europhys Lett 23: 373-378.
-
(1993)
Europhys Lett
, vol.23
, pp. 373-378
-
-
Grosberg, A.1
Rabin, Y.2
Havlin, S.3
Neer, A.4
-
29
-
-
0000422291
-
The role of topological constraints in the kinetics of collapse of macromolecules
-
Grosberg, A.Y., Nechaev, S.K., and Shakhnovich, E.I. (1988) The role of topological constraints in the kinetics of collapse of macromolecules. J Phys 49: 2095-2100.
-
(1988)
J Phys
, vol.49
, pp. 2095-2100
-
-
Grosberg, A.Y.1
Nechaev, S.K.2
Shakhnovich, E.I.3
-
30
-
-
84876859139
-
Nuclear pores and perinuclear expression sites of var and rDNA genes correspond to physically distinct regions in Plasmodium falciparum
-
doi:10.1128/EC.00023-13
-
Guizetti, J., Martins, R.M., Guadagnini, S., Claes, A., and Scherf, A. (2013) Nuclear pores and perinuclear expression sites of var and rDNA genes correspond to physically distinct regions in Plasmodium falciparum. Eukaryot Cell. doi:10.1128/EC.00023-13
-
(2013)
Eukaryot Cell
-
-
Guizetti, J.1
Martins, R.M.2
Guadagnini, S.3
Claes, A.4
Scherf, A.5
-
31
-
-
0003684449
-
-
Berlin: Springer.
-
Hastie, T.J., Tibshirani, R.J., and Friedman, J.J.H. (2001) The Elements of Statistical Learning: Data Mining, Inference, and Prediction. Berlin: Springer.
-
(2001)
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
-
-
Hastie, T.J.1
Tibshirani, R.J.2
Friedman, J.J.H.3
-
32
-
-
77956623136
-
Variant mitoses in lower eukaryotes: indicators of the evolution of mitosis?
-
Heath, I.B. (1980) Variant mitoses in lower eukaryotes: indicators of the evolution of mitosis? Int Rev Cytol 64: 1-80.
-
(1980)
Int Rev Cytol
, vol.64
, pp. 1-80
-
-
Heath, I.B.1
-
33
-
-
84865313775
-
Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony
-
Hoeijmakers, W.A.M., Flueck, C., Françoijs, K.-J., Smits, A.H., Wetzel, J., Volz, J.C., etal. (2012) Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony. Cell Microbiol 14: 1391-1401.
-
(2012)
Cell Microbiol
, vol.14
, pp. 1391-1401
-
-
Hoeijmakers, W.A.M.1
Flueck, C.2
Françoijs, K.-J.3
Smits, A.H.4
Wetzel, J.5
Volz, J.C.6
-
34
-
-
3342979409
-
Variable var transition rates underlie antigenic variation in malaria
-
Horrocks, P., Pinches, R., Christodoulou, Z., Kyes, S.A., and Newbold, C.I. (2004) Variable var transition rates underlie antigenic variation in malaria. Proc Natl Acad Sci USA 101: 11129-11134.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11129-11134
-
-
Horrocks, P.1
Pinches, R.2
Christodoulou, Z.3
Kyes, S.A.4
Newbold, C.I.5
-
35
-
-
0030305457
-
R: a language for data analysis and graphics
-
Ihaka, R., and Gentleman, R. (1996) R: a language for data analysis and graphics. J Comput Graph Stat 5: 299-314.
-
(1996)
J Comput Graph Stat
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
36
-
-
80052904110
-
Hierarchies in eukaryotic genome organization: insights from polymer theory and simulations
-
Iyer, B.V., Kenward, M., and Arya, G. (2011) Hierarchies in eukaryotic genome organization: insights from polymer theory and simulations. BMC Biophys 4: 8.
-
(2011)
BMC Biophys
, vol.4
, pp. 8
-
-
Iyer, B.V.1
Kenward, M.2
Arya, G.3
-
37
-
-
81055125638
-
Regulation of the probability of mouse odorant receptor gene choice
-
Khan, M., Vaes, E., and Mombaerts, P. (2011) Regulation of the probability of mouse odorant receptor gene choice. Cell 147: 907-921.
-
(2011)
Cell
, vol.147
, pp. 907-921
-
-
Khan, M.1
Vaes, E.2
Mombaerts, P.3
-
38
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski, M., Schein, J., Birol, İ., Connors, J., Gascoyne, R., Horsman, D., etal. (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19: 1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
-
39
-
-
0033971074
-
A simple RNA analysis method shows var and rif multigene family expression patterns in Plasmodium falciparum
-
Kyes, S., Pinches, R., and Newbold, C. (2000) A simple RNA analysis method shows var and rif multigene family expression patterns in Plasmodium falciparum. Mol Biochem Parasitol 105: 311-315.
-
(2000)
Mol Biochem Parasitol
, vol.105
, pp. 311-315
-
-
Kyes, S.1
Pinches, R.2
Newbold, C.3
-
40
-
-
0034780523
-
Antigenic variation at the infected red cell surface in malaria
-
Kyes, S., Horrocks, P., and Newbold, C. (2001) Antigenic variation at the infected red cell surface in malaria. Annu Rev Microbiol 55: 673-707.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 673-707
-
-
Kyes, S.1
Horrocks, P.2
Newbold, C.3
-
41
-
-
33846599782
-
Plasmodium falciparum var gene expression is developmentally controlled at the level of RNA polymerase II-mediated transcription initiation
-
Kyes, S., Christodoulou, Z., Pinches, R., Kriek, N., Horrocks, P., and Newbold, C. (2007) Plasmodium falciparum var gene expression is developmentally controlled at the level of RNA polymerase II-mediated transcription initiation. Mol Microbiol 63: 1237-1247.
-
(2007)
Mol Microbiol
, vol.63
, pp. 1237-1247
-
-
Kyes, S.1
Christodoulou, Z.2
Pinches, R.3
Kriek, N.4
Horrocks, P.5
Newbold, C.6
-
42
-
-
0018704491
-
Synchronization of Plasmodium falciparum erythrocytic stages in culture
-
Lambros, C., and Vanderberg, J.P. (1979) Synchronization of Plasmodium falciparum erythrocytic stages in culture. J Parasitol 65: 418-420.
-
(1979)
J Parasitol
, vol.65
, pp. 418-420
-
-
Lambros, C.1
Vanderberg, J.P.2
-
43
-
-
0021109045
-
Cloning and characterisation of the rRNA genes from the human malaria parasite Plasmodium falciparum
-
Langsley, G., Hyde, J.E., Goman, M., and Scaife, J.G. (1983) Cloning and characterisation of the rRNA genes from the human malaria parasite Plasmodium falciparum. Nucleic Acids Res 11: 8703-8717.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 8703-8717
-
-
Langsley, G.1
Hyde, J.E.2
Goman, M.3
Scaife, J.G.4
-
44
-
-
0141633042
-
Discovery of gene function by expression profiling of the malaria parasite life cycle
-
Le Roch, K.G., Zhou, Y., Blair, P.L., Grainger, M., Moch, J.K., Haynes, J.D., etal. (2003) Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 301: 1503-1508.
-
(2003)
Science
, vol.301
, pp. 1503-1508
-
-
Le Roch, K.G.1
Zhou, Y.2
Blair, P.L.3
Grainger, M.4
Moch, J.K.5
Haynes, J.D.6
-
45
-
-
66149141833
-
Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture
-
Lemieux, J.E., Gomez-Escobar, N., Feller, A., Carret, C., Amambua-Ngwa, A., Pinches, R., etal. (2009) Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture. Proc Natl Acad Sci USA 106: 7559-7564.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7559-7564
-
-
Lemieux, J.E.1
Gomez-Escobar, N.2
Feller, A.3
Carret, C.4
Amambua-Ngwa, A.5
Pinches, R.6
-
46
-
-
77956528790
-
Fundamental limits on the suppression of molecular fluctuations
-
Lestas, I., Vinnicombe, G., and Paulsson, J. (2010) Fundamental limits on the suppression of molecular fluctuations. Nature 467: 174-178.
-
(2010)
Nature
, vol.467
, pp. 174-178
-
-
Lestas, I.1
Vinnicombe, G.2
Paulsson, J.3
-
47
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E., Van Berkum, N.L., Williams, L., Imakaev, M., Ragoczy, T., Telling, A., etal. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
-
48
-
-
33645814398
-
CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1
-
Ling, J.Q., Li, T., Hu, J.F., Vu, T.H., Chen, H.L., Qiu, X.W., etal. (2006) CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312: 269-272.
-
(2006)
Science
, vol.312
, pp. 269-272
-
-
Ling, J.Q.1
Li, T.2
Hu, J.F.3
Vu, T.H.4
Chen, H.L.5
Qiu, X.W.6
-
49
-
-
33644854445
-
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
-
Llinás, M., Bozdech, Z., Wong, E.D., Adai, A.T., and DeRisi, J.L. (2006) Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Res 34: 1166-1173.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1166-1173
-
-
Llinás, M.1
Bozdech, Z.2
Wong, E.D.3
Adai, A.T.4
DeRisi, J.L.5
-
50
-
-
84862208151
-
GeneDB - an annotation database for pathogens
-
Logan-Klumpler, F.J., De Silva, N., Boehme, U., Rogers, M.B., Velarde, G., McQuillan, J.A., etal. (2011) GeneDB - an annotation database for pathogens. Nucleic Acids Res 40: D98-D108.
-
(2011)
Nucleic Acids Res
, vol.40
-
-
Logan-Klumpler, F.J.1
De Silva, N.2
Boehme, U.3
Rogers, M.B.4
Velarde, G.5
McQuillan, J.A.6
-
51
-
-
33746228114
-
Interchromosomal interactions and olfactory receptor choice
-
Lomvardas, S., Barnea, G., Pisapia, D.J., Mendelsohn, M., Kirkland, J., and Axel, R. (2006) Interchromosomal interactions and olfactory receptor choice. Cell 126: 403-413.
-
(2006)
Cell
, vol.126
, pp. 403-413
-
-
Lomvardas, S.1
Barnea, G.2
Pisapia, D.J.3
Mendelsohn, M.4
Kirkland, J.5
Axel, R.6
-
52
-
-
36549069632
-
5′ flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites
-
Lopez-Rubio, J.J., Gontijo, A.M., Nunes, M.C., Issar, N., Hernandez Rivas, R., and Scherf, A. (2007) 5′ flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites. Mol Microbiol 66: 1296-1305.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1296-1305
-
-
Lopez-Rubio, J.J.1
Gontijo, A.M.2
Nunes, M.C.3
Issar, N.4
Hernandez Rivas, R.5
Scherf, A.6
-
53
-
-
60649095351
-
Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites
-
Lopez-Rubio, J.-J., Mancio-Silva, L., and Scherf, A. (2009) Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites. Cell Host Microbe 5: 179-190.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 179-190
-
-
Lopez-Rubio, J.-J.1
Mancio-Silva, L.2
Scherf, A.3
-
54
-
-
75649085702
-
Fractal geometry in the nucleus
-
McNally, J.G., and Mazza, D. (2010) Fractal geometry in the nucleus. EMBO J 29: 2-3.
-
(2010)
EMBO J
, vol.29
, pp. 2-3
-
-
McNally, J.G.1
Mazza, D.2
-
55
-
-
79955854161
-
An epigenetic signature for monoallelic olfactory receptor expression
-
Magklara, A., Yen, A., Colquitt, B.M., Clowney, E.J., Allen, W., Markenscoff-Papadimitriou, E., etal. (2011) An epigenetic signature for monoallelic olfactory receptor expression. Cell 145: 555-570.
-
(2011)
Cell
, vol.145
, pp. 555-570
-
-
Magklara, A.1
Yen, A.2
Colquitt, B.M.3
Clowney, E.J.4
Allen, W.5
Markenscoff-Papadimitriou, E.6
-
56
-
-
77449147610
-
FRT-seq: amplification-free, strand-specific transcriptome sequencing
-
Mamanova, L., Andrews, R.M., James, K.D., Sheridan, E.M., Ellis, P.D., Langford, C.F., etal. (2010) FRT-seq: amplification-free, strand-specific transcriptome sequencing. Nat Methods 7: 130-132.
-
(2010)
Nat Methods
, vol.7
, pp. 130-132
-
-
Mamanova, L.1
Andrews, R.M.2
James, K.D.3
Sheridan, E.M.4
Ellis, P.D.5
Langford, C.F.6
-
57
-
-
77957011313
-
Clustering of dispersed ribosomal DNA and its role in gene regulation and chromosome-end associations in malaria parasites
-
Mancio-Silva, L., Zhang, Q., Scheidig-Benatar, C., and Scherf, A. (2010) Clustering of dispersed ribosomal DNA and its role in gene regulation and chromosome-end associations in malaria parasites. Proc Natl Acad Sci USA 107: 15117-15122.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 15117-15122
-
-
Mancio-Silva, L.1
Zhang, Q.2
Scheidig-Benatar, C.3
Scherf, A.4
-
58
-
-
18744375181
-
Concepts in nuclear architecture
-
Misteli, T. (2005) Concepts in nuclear architecture. Bioessays 27: 477-487.
-
(2005)
Bioessays
, vol.27
, pp. 477-487
-
-
Misteli, T.1
-
59
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne, C.S., Chakalova, L., Brown, K.E., Carter, D., Horton, A., Debrand, E., etal. (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 36: 1065.
-
(2004)
Nat Genet
, vol.36
, pp. 1065
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
-
60
-
-
84855219212
-
Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
-
Oyola, S.O., Otto, T.D., Gu, Y., Maslen, G., Manske, M., Campino, S., etal. (2012) Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes. BMC Genomics 13: 1.
-
(2012)
BMC Genomics
, vol.13
, pp. 1
-
-
Oyola, S.O.1
Otto, T.D.2
Gu, Y.3
Maslen, G.4
Manske, M.5
Campino, S.6
-
61
-
-
84856448155
-
Optimal enzymes for amplifying sequencing libraries
-
Quail, M.A., Otto, T.D., Gu, Y., Harris, S.R., Skelly, T.F., McQuillan, J.A., etal. (2011) Optimal enzymes for amplifying sequencing libraries. Nat Methods 9: 10-11.
-
(2011)
Nat Methods
, vol.9
, pp. 10-11
-
-
Quail, M.A.1
Otto, T.D.2
Gu, Y.3
Harris, S.R.4
Skelly, T.F.5
McQuillan, J.A.6
-
62
-
-
17244382283
-
Antigenic variation in Plasmodium falciparum is associated with movement of var loci between subnuclear locations
-
Ralph, S.A., Scheidig-Benatar, C., and Scherf, A. (2005) Antigenic variation in Plasmodium falciparum is associated with movement of var loci between subnuclear locations. Proc Natl Acad Sci USA 102: 5414-5419.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5414-5419
-
-
Ralph, S.A.1
Scheidig-Benatar, C.2
Scherf, A.3
-
63
-
-
79953288741
-
Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern
-
Recker, M., Buckee, C.O., Serazin, A., Kyes, S., Pinches, R., Christodoulou, Z., etal. (2011) Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern. PLoS Pathog 7: e1001306.
-
(2011)
PLoS Pathog
, vol.7
-
-
Recker, M.1
Buckee, C.O.2
Serazin, A.3
Kyes, S.4
Pinches, R.5
Christodoulou, Z.6
-
64
-
-
70149094741
-
Global identification of yeast chromosome interactions using genome conformation capture
-
Rodley, C.D.M., Bertels, F., Jones, B., and O'Sullivan, J.M. (2009) Global identification of yeast chromosome interactions using genome conformation capture. Fungal Genet Biol 46: 879-886.
-
(2009)
Fungal Genet Biol
, vol.46
, pp. 879-886
-
-
Rodley, C.D.M.1
Bertels, F.2
Jones, B.3
O'Sullivan, J.M.4
-
65
-
-
84859888831
-
Transcriptional variation in the malaria parasite Plasmodium falciparum
-
Rovira-Graells, N., Gupta, A.P., Planet, E., Crowley, V.M., Mok, S., Ribas De Pouplana, L., etal. (2012) Transcriptional variation in the malaria parasite Plasmodium falciparum. Genome Res 22: 925-938.
-
(2012)
Genome Res
, vol.22
, pp. 925-938
-
-
Rovira-Graells, N.1
Gupta, A.P.2
Planet, E.3
Crowley, V.M.4
Mok, S.5
Ribas De Pouplana, L.6
-
66
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.-A., and Barrell, B. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.-A.6
Barrell, B.7
-
67
-
-
0038046769
-
Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria
-
Salanti, A., Staalsoe, T., Lavstsen, T., Jensen, A.T.R., Sowa, M.P.K., Arnot, D.E., etal. (2003) Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria. Mol Microbiol 49: 179-191.
-
(2003)
Mol Microbiol
, vol.49
, pp. 179-191
-
-
Salanti, A.1
Staalsoe, T.2
Lavstsen, T.3
Jensen, A.T.R.4
Sowa, M.P.K.5
Arnot, D.E.6
-
68
-
-
0032530397
-
Antigenic variation in malaria: in situ switching, relaxed and mutually exclusive transcription of var genes during intra-erythrocytic development in Plasmodium falciparum
-
Scherf, A., Hernandez-Rivas, R., Buffet, P., Bottius, E., Benatar, C., Pouvelle, B., etal. (1998) Antigenic variation in malaria: in situ switching, relaxed and mutually exclusive transcription of var genes during intra-erythrocytic development in Plasmodium falciparum. EMBO J 17: 5418-5426.
-
(1998)
EMBO J
, vol.17
, pp. 5418-5426
-
-
Scherf, A.1
Hernandez-Rivas, R.2
Buffet, P.3
Bottius, E.4
Benatar, C.5
Pouvelle, B.6
-
69
-
-
84884676244
-
Antigenic variation in Plasmodium falciparum
-
Scherf, A., Lopez-Rubio, J.J., and Riviere, L. (2008) Antigenic variation in Plasmodium falciparum. Annu Rev Microbiol 62: 445-470.
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 445-470
-
-
Scherf, A.1
Lopez-Rubio, J.J.2
Riviere, L.3
-
70
-
-
0346362447
-
Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse
-
Serizawa, S., Miyamichi, K., Nakatani, H., Suzuki, M., Saito, M., Yoshihara, Y., and Sakano, H. (2003) Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse. Science 302: 2088-2094.
-
(2003)
Science
, vol.302
, pp. 2088-2094
-
-
Serizawa, S.1
Miyamichi, K.2
Nakatani, H.3
Suzuki, M.4
Saito, M.5
Yoshihara, Y.6
Sakano, H.7
-
71
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton, T., Yaffe, E., Kenigsberg, E., Bantignies, F., Leblanc, B., Hoichman, M., etal. (2012) Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148: 458-472.
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
-
72
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
Simonis, M., Klous, P., Splinter, E., Moshkin, Y., Willemsen, R., de Wit, E., etal. (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 38: 1348.
-
(2006)
Nat Genet
, vol.38
, pp. 1348
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
de Wit, E.6
-
73
-
-
0028982168
-
Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes
-
Smith, J.D., Chitnis, C.E., Craig, A.G., Roberts, D.J., Hudson-Taylor, D.E., Peterson, D.S., etal. (1995) Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes. Cell 82: 101-110.
-
(1995)
Cell
, vol.82
, pp. 101-110
-
-
Smith, J.D.1
Chitnis, C.E.2
Craig, A.G.3
Roberts, D.J.4
Hudson-Taylor, D.E.5
Peterson, D.S.6
-
74
-
-
25844496592
-
The role of chromatin structure in regulating the expression of clustered genes
-
Sproul, D., Gilbert, N., and Bickmore, W.A. (2005) The role of chromatin structure in regulating the expression of clustered genes. Nat Rev Genet 6: 775.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 775
-
-
Sproul, D.1
Gilbert, N.2
Bickmore, W.A.3
-
75
-
-
0029070914
-
The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes
-
Su, X., Heatwole, V.M., Wertheimer, S.P., Guinet, F., Herrfeldt, J.A., Peterson, D.S., etal. (1995) The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes. Cell 82: 89-100.
-
(1995)
Cell
, vol.82
, pp. 89-100
-
-
Su, X.1
Heatwole, V.M.2
Wertheimer, S.P.3
Guinet, F.4
Herrfeldt, J.A.5
Peterson, D.S.6
-
76
-
-
0017311840
-
Human malaria parasites in continuous culture
-
Trager, W., and Jensen, J.B. (1976) Human malaria parasites in continuous culture. Science 193: 673-675.
-
(1976)
Science
, vol.193
, pp. 673-675
-
-
Trager, W.1
Jensen, J.B.2
-
77
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., Williams, B.A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M.J., etal. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
-
78
-
-
0024435053
-
Developmental regulation of stage-specific ribosome populations in Plasmodium
-
Waters, A.P., Syin, C., and McCutchan, T.F. (1989) Developmental regulation of stage-specific ribosome populations in Plasmodium. Nature 342: 438-440.
-
(1989)
Nature
, vol.342
, pp. 438-440
-
-
Waters, A.P.1
Syin, C.2
McCutchan, T.F.3
-
79
-
-
0029015661
-
Three-dimensional ultrastructural analysis of the Saccharomyces cerevisiae mitotic spindle
-
Winey, M., Mamay, C.L., O'Toole, E.T., Mastronarde, D.N., Giddings, T.H., McDonald, K.L., and McIntosh, J.R. (1995) Three-dimensional ultrastructural analysis of the Saccharomyces cerevisiae mitotic spindle. J Cell Biol 129: 1601-1615.
-
(1995)
J Cell Biol
, vol.129
, pp. 1601-1615
-
-
Winey, M.1
Mamay, C.L.2
O'Toole, E.T.3
Mastronarde, D.N.4
Giddings, T.H.5
McDonald, K.L.6
McIntosh, J.R.7
-
80
-
-
80054984337
-
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
-
Yaffe, E., and Tanay, A. (2011) Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat Genet 43: 1059-1065.
-
(2011)
Nat Genet
, vol.43
, pp. 1059-1065
-
-
Yaffe, E.1
Tanay, A.2
-
81
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
-
Zhao, Z., Tavoosidana, G., Sjölinder, M., Göndör, A., Mariano, P., Wang, S., etal. (2006) Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat Genet 38: 1341-1347.
-
(2006)
Nat Genet
, vol.38
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjölinder, M.3
Göndör, A.4
Mariano, P.5
Wang, S.6
|