Regulation of the probability of mouse odorant receptor gene choice

Cell

Volumn 147, Issue 4, 2011, Pages 907-921

  Khan, Mona ^a   Vaes, Evelien ^a   Mombaerts, Peter ^a  

^a MAX PLANCK INSTITUTE OF BIOPHYSICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ANIMAL EXPERIMENT; ARTICLE; CELL COUNT; CONTROLLED STUDY; DNA BARCODING; GENE CLUSTER; GENE DELETION; GENE EXPRESSION REGULATION; GENE STRUCTURE; H ELEMENT; IN SITU HYBRIDIZATION; MOLECULAR PROBE; MOUSE; NONHUMAN; ODORANT RECEPTOR GENE; P ELEMENT; PRIORITY JOURNAL; RECEPTOR GENE;

MUS;

EID: 81055125638     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2011.09.049     Document Type: Article

References (33)

1. Y. Benjamini, and Y. Hochberg Controlling the false discovery rate: a practical and powerful approach to multiple testing J.R. Stat. Soc.; B 57 1995 289 300
2. T. Bozza, A. Vassalli, S. Fuss, J.J. Zhang, B. Weiland, R. Pacifico, P. Feinstein, and P. Mombaerts Mapping of class I and class II odorant receptors to glomerular domains by two distinct types of olfactory sensory neurons in the mouse Neuron 61 2009 220 233
3. L. Buck, and R. Axel A novel multigene family may encode odorant receptors: a molecular basis for odor recognition Cell 65 1991 175 187
4. M. Bulger, and M. Groudine Functional and mechanistic diversity of distal transcription enhancers Cell 144 2011 327 339
5. A. Chess, I. Simon, H. Cedar, and R. Axel Allelic inactivation regulates olfactory receptor gene expression Cell 78 1994 823 834
6. P. Feinstein, T. Bozza, I. Rodriguez, A. Vassalli, and P. Mombaerts Axon guidance of mouse olfactory sensory neurons by odorant receptors and the β2 adrenergic receptor Cell 117 2004 833 846
7. S.H. Fuss, M. Omura, and P. Mombaerts Local and cis effects of the H element on expression of odorant receptor genes in mouse Cell 130 2007 373 384
8. G.K. Geiss, R.E. Bumgarner, B. Birditt, T. Dahl, N. Dowidar, D.L. Dunaway, H.P. Fell, S. Ferree, R.D. George, and T. Grogan Direct multiplexed measurement of gene expression with color-coded probe pairs Nat. Biotechnol. 26 2008 317 325
9. F. Grosveld, G.B. van Assendelft, D.R. Greaves, and G. Kollias Position-independent, high-level expression of the human β-globin gene in transgenic mice Cell 51 1987 975 985
10. R. Ihaka, and R. Gentleman R: A language for data analysis and graphics J. Comput. Graph. Statist. 5 1996 299 314
11. T. Ishii, M. Omura, and P. Mombaerts Protocols for two- and three-color fluorescent RNA in situ hybridization of the main and accessory olfactory epithelia in mouse J. Neurocytol. 33 2004 657 669
12. C.L. Iwema, H. Fang, D.B. Kurtz, S.L. Youngentob, and J.E. Schwob Odorant receptor expression patterns are restored in lesion-recovered rat olfactory epithelium J. Neurosci. 24 2004 356 369
13. F. Köntgen, G. Süss, C. Stewart, M. Steinmetz, and H. Bluethmann Targeted disruption of the MHC class II Aa gene in C57BL/6 mice Int. Immunol. 5 1993 957 964
14. A.C. Lee, H. Tian, X. Grosmaitre, and M. Ma Expression patterns of odorant receptors and response properties of olfactory sensory neurons in aged mice Chem. Senses 34 2009 695 703
15. S. Lomvardas, G. Barnea, D.J. Pisapia, M. Mendelsohn, J. Kirkland, and R. Axel Interchromosomal interactions and olfactory receptor choice Cell 126 2006 403 413
16. B. Malnic, J. Hirono, T. Sato, and L.B. Buck Combinatorial receptor codes for odors Cell 96 1999 713 723
17. D.J. McCarthy, and G.K. Smyth Testing significance relative to a fold-change threshold is a TREAT Bioinformatics 25 2009 765 771
18. P. Mombaerts, F. Wang, C. Dulac, S.K. Chao, A. Nemes, M. Mendelsohn, J. Edmondson, and R. Axel Visualizing an olfactory sensory map Cell 87 1996 675 686
19. P. Mombaerts Odorant receptor gene choice in olfactory sensory neurons: the one receptor-one neuron hypothesis revisited Curr. Opin. Neurobiol. 14 2004 31 36
20. H. Nishizumi, K. Kumasaka, N. Inoue, A. Nakashima, and H. Sakano Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis Proc. Natl. Acad. Sci. USA 104 2007 20067 20072
21. R. Ramírez-Solis, P. Liu, and A. Bradley Chromosome engineering in mice Nature 378 1995 720 724
22. K.J. Ressler, S.L. Sullivan, and L.B. Buck A zonal organization of odorant receptor gene expression in the olfactory epithelium Cell 73 1993 597 609
23. D.J. Rodriguez-Gil, H.B. Treloar, X. Zhang, A.M. Miller, A. Two, C. Iwema, S.J. Firestein, and C.A. Greer Chromosomal location-dependent nonstochastic onset of odor receptor expression J. Neurosci. 30 2010 10067 10075
24. A. Rothman, P. Feinstein, J. Hirota, and P. Mombaerts The promoter of the mouse odorant receptor gene M71 Mol. Cell. Neurosci. 28 2005 535 546
25. S. Serizawa, K. Miyamichi, H. Nakatani, M. Suzuki, M. Saito, Y. Yoshihara, and H. Sakano Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse Science 302 2003 2088 2094
26. G.K. Smyth Linear models and empirical bayes methods for assessing differential expression in microarray experiments Stat. Appl. Genet. Mol. Biol. 3 2004 Art. 3
27. J. Vandesompele, K. De Preter, F. Pattyn, B. Poppe, N. Van Roy, A. De Paepe, and F. Speleman Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol. 3 2002 RESEARCH0034
28. A. Vassalli, P. Feinstein, and P. Mombaerts Homeodomain binding motifs modulate the probability of odorant receptor gene choice in transgenic mice Mol. Cell. Neurosci. 46 2011 381 396
29. M.C. Walters, S. Fiering, J. Eidemiller, W. Magis, M. Groudine, and D.I. Martin Enhancers increase the probability but not the level of gene expression Proc. Natl. Acad. Sci. USA 92 1995 7125 7129
30. A. Williams, C.G. Spilianakis, and R.A. Flavell Interchromosomal association and gene regulation in trans Trends Genet. 26 2010 188 197
31. S.Y. Xie, P. Feinstein, and P. Mombaerts Characterization of a cluster comprising approximately 100 odorant receptor genes in mouse Mamm. Genome 11 2000 1070 1078
32. J.M. Young, B.M. Shykind, R.P. Lane, L. Tonnes-Priddy, J.A. Ross, M. Walker, E.M. Williams, and B.J. Trask Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels Genome Biol. 4 2003 R71
33. X. Zhang, X. Zhang, and S. Firestein Comparative genomics of odorant and pheromone receptor genes in rodents Genomics 89 2007 441 450