-
1
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
Fullwood, M.J. et al. An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 462, 58-64 (2009).
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
-
2
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
Bantignies, F. et al. Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 144, 214-226 (2011).
-
(2011)
Cell
, vol.144
, pp. 214-226
-
-
Bantignies, F.1
-
3
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder, S. et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat. Genet. 42, 53-61 (2010).
-
(2010)
Nat. Genet.
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
-
4
-
-
34249307315
-
Nuclear organization of the genome and the potential for gene regulation
-
DOI 10.1038/nature05916, PII NATURE05916
-
Fraser, P. & Bickmore, W. Nuclear organization of the genome and the potential for gene regulation. Nature 447, 413-417 (2007). (Pubitemid 46816747)
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 413-417
-
-
Fraser, P.1
Bickmore, W.2
-
5
-
-
60349092237
-
Mapping cis-and trans-chromatin interaction networks using chromosome conformation capture (3C)
-
Miele, A. & Dekker, J. Mapping cis-and trans-chromatin interaction networks using chromosome conformation capture (3C). Methods Mol. Biol. 464, 105-121 (2009).
-
(2009)
Methods Mol. Biol.
, vol.464
, pp. 105-121
-
-
Miele, A.1
Dekker, J.2
-
6
-
-
34548565667
-
Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
-
Hagège, H. et al. Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nat. Protoc. 2, 1722-1733 (2007).
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1722-1733
-
-
Hagège, H.1
-
7
-
-
0037083376
-
Capturing chromosome conformation
-
DOI 10.1126/science.1067799
-
Dekker, J., Rippe, K., Dekker, M. & Kleckner, N. Capturing chromosome conformation. Science 295, 1306-1311 (2002). (Pubitemid 34157624)
-
(2002)
Science
, vol.295
, Issue.5558
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
8
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
DOI 10.1038/ng1896, PII NG1896
-
Simonis, M. et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat. Genet. 38, 1348-1354 (2006). (Pubitemid 44646300)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
De Wit, E.6
Van Steensel, B.7
De Laat, W.8
-
9
-
-
70350735949
-
High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology
-
Simonis, M. et al. High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology. Nat. Methods 6, 837-842 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 837-842
-
-
Simonis, M.1
-
10
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293 (2009).
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
11
-
-
31344477982
-
The three 'C' s of chromosome conformation capture: Controls, controls, controls
-
DOI 10.1038/nmeth823, PII N823
-
Dekker, J. The three 'C' s of chromosome conformation capture: controls, controls, controls. Nat. Methods 3, 17-21 (2006). (Pubitemid 43135343)
-
(2006)
Nature Methods
, vol.3
, Issue.1
, pp. 17-21
-
-
Dekker, J.1
-
12
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
-
Dohm, J.C., Lottaz, C., Borodina, T. & Himmelbauer, H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 36, e105 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
13
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird, D. et al. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol. 12, R18 (2011).
-
(2011)
Genome Biol.
, vol.12
-
-
Aird, D.1
-
14
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
Mitchell, J.A. & Fraser, P. Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev. 22, 20-25 (2008).
-
(2008)
Genes Dev.
, vol.22
, pp. 20-25
-
-
Mitchell, J.A.1
Fraser, P.2
-
15
-
-
35648930913
-
The role of transcription factories in large-scale structure and dynamics of interphase chromatin
-
DOI 10.1016/j.semcdb.2007.08.008, PII S1084952107001231, Membrane Lipid Microdomains: Roles in Signalling and Disease and 3D Chromatin
-
Sexton, T., Umlauf, D., Kurukuti, S. & Fraser, P. The role of transcription factories in large-scale structure and dynamics of interphase chromatin. Semin. Cell Dev. Biol. 18, 691-697 (2007). (Pubitemid 350026432)
-
(2007)
Seminars in Cell and Developmental Biology
, vol.18
, Issue.5
, pp. 691-697
-
-
Sexton, T.1
Umlauf, D.2
Kurukuti, S.3
Fraser, P.4
-
16
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst, J. et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473, 43-49 (2011).
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
-
17
-
-
79955569948
-
Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
-
Hakim, O. et al. Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements. Genome Res. 21, 697-706 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 697-706
-
-
Hakim, O.1
-
18
-
-
67549119096
-
CTCF: Master weaver of the genome
-
Phillips, J.E. & Corces, V.G. CTCF: master weaver of the genome. Cell 137, 1194-1211 (2009).
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
19
-
-
48249153426
-
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
-
Fu, Y., Sinha, M., Peterson, C.L. & Weng, Z. The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet. 4, e1000138 (2008).
-
(2008)
PLoS Genet.
, vol.4
-
-
Fu, Y.1
Sinha, M.2
Peterson, C.L.3
Weng, Z.4
-
20
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
Handoko, L. et al. CTCF-mediated functional chromatin interactome in pluripotent cells. Nat. Genet. 43, 630-638 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 630-638
-
-
Handoko, L.1
-
21
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
DOI 10.1038/nature06947, PII NATURE06947
-
Guelen, L. et al. Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453, 948-951 (2008). (Pubitemid 351832561)
-
(2008)
Nature
, vol.453
, Issue.7197
, pp. 948-951
-
-
Guelen, L.1
Pagie, L.2
Brasset, E.3
Meuleman, W.4
Faza, M.B.5
Talhout, W.6
Eussen, B.H.7
De Klein, A.8
Wessels, L.9
De Laat, W.10
Van Steensel, B.11
-
22
-
-
77952576224
-
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
-
Peric-Hupkes, D. et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol. Cell 38, 603-613 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
-
23
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Duan, Z. et al. A three-dimensional model of the yeast genome. Nature 465, 363-367 (2010).
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
-
24
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H., Ruan, J. & Durbin, R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18, 1851-1858 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
25
-
-
10044264270
-
Discovery of functional noncoding elements by digital analysis of chromatin structure
-
DOI 10.1073/pnas.0407387101
-
Sabo, P.J. et al. Discovery of functional noncoding elements by digital analysis of chromatin structure. Proc. Natl. Acad. Sci. USA 101, 16837-16842 (2004). (Pubitemid 39601325)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.48
, pp. 16837-16842
-
-
Sabo, P.J.1
Hawrylycz, M.2
Wallace, J.C.3
Humbert, R.4
Yu, M.5
Shafer, A.6
Kawamoto, J.7
Hall, R.8
Mack, J.9
Dorschner, M.O.10
McArthur, M.11
Stamatoyannopoulos, J.A.12
-
26
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
DOI 10.1038/nature06008, PII NATURE06008
-
Mikkelsen, T.S. et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553-560 (2007). (Pubitemid 47206934)
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.-K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
|