-
1
-
-
0033578669
-
Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures
-
10.1016/S0092-8674(00)81516-0 10499799
-
Benson SD Bamford JKH Bamford DH Burnett RM Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures Cell 1999 98 6 825-833 10.1016/S0092-8674(00)81516-0 10499799
-
(1999)
Cell
, vol.98
, Issue.6
, pp. 825-833
-
-
Benson, S.D.1
Bamford, J.K.H.2
Bamford, D.H.3
Burnett, R.M.4
-
2
-
-
2442686734
-
The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life
-
419672 15123802 10.1073/pnas.0401773101
-
Rice G Tang L Stedman K Roberto F Spuhler J Gillitzer E Johnson JE Douglas T Young M The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life Proc Natl Acad Sci U S A 2004 101 20 7716-7720 419672 15123802 10.1073/ pnas.0401773101
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.20
, pp. 7716-7720
-
-
Rice, G.1
Tang, L.2
Stedman, K.3
Roberto, F.4
Spuhler, J.5
Gillitzer, E.6
Johnson, J.E.7
Douglas, T.8
Young, M.9
-
3
-
-
30044450170
-
Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses
-
1323162 16357204 10.1073/pnas.0506383102
-
Khayat R Tang L Larson ET Lawrence CM Young M Johnson JE Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses Proc Natl Acad Sci U S A 2005 102 52 18944-18949 1323162 16357204 10.1073/pnas.0506383102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.52
, pp. 18944-18949
-
-
Khayat, R.1
Tang, L.2
Larson, E.T.3
Lawrence, C.M.4
Young, M.5
Johnson, J.E.6
-
4
-
-
0037069358
-
The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus
-
137492 12411581 10.1073/pnas.232580699
-
Nandhagopal N Simpson AA Gurnon JR Yan X Baker TS Graves MV Van Etten JL Rossmann MG The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus Proc Natl Acad Sci U S A 2002 99 23 14758-14763 137492 12411581 10.1073/pnas.232580699
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.23
, pp. 14758-14763
-
-
Nandhagopal, N.1
Simpson, A.A.2
Gurnon, J.R.3
Yan, X.4
Baker, T.S.5
Graves, M.V.6
Van Etten, J.L.7
Rossmann, M.G.8
-
5
-
-
0038730770
-
Do viruses form lineages across different domains of life?
-
10.1016/S0923-2508(03)00065-2 12798226
-
Bamford DH Do viruses form lineages across different domains of life? Res Microbiol 2003 154 4 231-236 10.1016/S0923-2508(03)00065-2 12798226
-
(2003)
Res Microbiol
, vol.154
, Issue.4
, pp. 231-236
-
-
Bamford, D.H.1
-
6
-
-
0036598511
-
Evolution of viral structure
-
10.1006/tpbi.2002.1591 12167365
-
Bamford DH Burnett RM Stuart DI Evolution of viral structure Theor Popul Biol 2002 61 4 461-470 10.1006/tpbi.2002.1591 12167365
-
(2002)
Theor Popul Biol
, vol.61
, Issue.4
, pp. 461-470
-
-
Bamford, D.H.1
Burnett, R.M.2
Stuart, D.I.3
-
7
-
-
0034332560
-
The origins and ongoing evolution of viruses
-
10.1016/S0966-842X(00)01863-1 11121760
-
Hendrix RW Lawrence JG Hatfull GF Casjens S The origins and ongoing evolution of viruses Trends Microbiol 2000 8 11 504-508 10.1016/ S0966-842X(00)01863-1 11121760
-
(2000)
Trends Microbiol
, vol.8
, Issue.11
, pp. 504-508
-
-
Hendrix, R.W.1
Lawrence, J.G.2
Hatfull, G.F.3
Casjens, S.4
-
8
-
-
9744228738
-
Does common architecture reveal a viral lineage spanning all three domains of life?
-
10.1016/j.molcel.2004.11.016 15574324
-
Benson SD Bamford JKH Bamford DH Burnett RM Does common architecture reveal a viral lineage spanning all three domains of life? Molecular cell 2004 16 5 673-685 10.1016/j.molcel.2004.11.016 15574324
-
(2004)
Molecular Cell
, vol.16
, Issue.5
, pp. 673-685
-
-
Benson, S.D.1
Bamford, J.K.H.2
Bamford, D.H.3
Burnett, R.M.4
-
9
-
-
33644859575
-
Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain
-
1450140 16505372 10.1073/pnas.0510333103
-
Forterre P Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain Proc Natl Acad Sci U S A 2006 103 10 3669-3674 1450140 16505372 10.1073/pnas.0510333103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.10
, pp. 3669-3674
-
-
Forterre, P.1
-
10
-
-
33645053240
-
The origin of viruses and their possible roles in major evolutionary transitions
-
10.1016/j.virusres.2006.01.010 16476498
-
Forterre P The origin of viruses and their possible roles in major evolutionary transitions Virus Res 2006 117 1 5-16 10.1016/ j.virusres.2006.01.010 16476498
-
(2006)
Virus Res
, vol.117
, Issue.1
, pp. 5-16
-
-
Forterre, P.1
-
11
-
-
33947593126
-
The ancient Virus World and evolution of cells
-
1594570 16984643 10.1186/1745-6150-1-29
-
Koonin EV Senkevich TG Dolja VV The ancient Virus World and evolution of cells Biol Direct 2006 1 29 1594570 16984643 10.1186/1745-6150-1-29
-
(2006)
Biol Direct
, vol.1
, pp. 29
-
-
Koonin, E.V.1
Senkevich, T.G.2
Dolja, V.V.3
-
12
-
-
27944491964
-
What does structure tell us about virus evolution?
-
10.1016/j.sbi.2005.10.012 16271469
-
Bamford DH Grimes JM Stuart DI What does structure tell us about virus evolution? Curr Opin Struct Biol 2005 15 6 655-663 10.1016/ j.sbi.2005.10.012 16271469
-
(2005)
Curr Opin Struct Biol
, vol.15
, Issue.6
, pp. 655-663
-
-
Bamford, D.H.1
Grimes, J.M.2
Stuart, D.I.3
-
13
-
-
20444432821
-
A snapshot of viral evolution from genome analysis of the tectiviridae family
-
10.1016/j.jmb.2005.04.059 15946683
-
Saren AM Ravantti JJ Benson SD Burnett RM Paulin L Bamford DH Bamford JKH A snapshot of viral evolution from genome analysis of the tectiviridae family Journal of molecular biology 2005 350 3 427-440 10.1016/j.jmb.2005.04.059 15946683
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.3
, pp. 427-440
-
-
Saren, A.M.1
Ravantti, J.J.2
Benson, S.D.3
Burnett, R.M.4
Paulin, L.5
Bamford, D.H.6
Bamford, J.K.H.7
-
14
-
-
34250007704
-
Lipid-containing bacteriophage PM2, the type-organism of Corticoviridae
-
Oxford, Oxford University Press Calendar R 2nd
-
Bamford DH Bamford JKH Lipid-containing bacteriophage PM2, the type-organism of Corticoviridae The bacteriophages Oxford, Oxford University Press Calendar R 2nd 2006 171-175
-
(2006)
The Bacteriophages
, pp. 171-175
-
-
Bamford, D.H.1
Bamford, J.K.H.2
-
15
-
-
0014275022
-
Properties of bacteriophage PM2: A lipid-containing bacterial virus
-
10.1016/0042-6822(68)90094-9 5655723
-
Espejo RT Canelo ES Properties of bacteriophage PM2: A lipid-containing bacterial virus Virology 1968 34 4 738-747 10.1016/0042-6822(68)90094-9 5655723
-
(1968)
Virology
, vol.34
, Issue.4
, pp. 738-747
-
-
Espejo, R.T.1
Canelo, E.S.2
-
16
-
-
0014284555
-
Properties and characterization of the host bacterium of bacteriophage PM2
-
252224 5650089
-
Espejo RT Canelo ES Properties and characterization of the host bacterium of bacteriophage PM2 Journal of bacteriology 1968 95 5 1887-1891 252224 5650089
-
(1968)
Journal of Bacteriology
, vol.95
, Issue.5
, pp. 1887-1891
-
-
Espejo, R.T.1
Canelo, E.S.2
-
17
-
-
0344761956
-
Purification and protein composition of PM2, the first lipid-containing bacterial virus to be isolated
-
10.1006/viro.1999.9838 10502515
-
Kivelä HM Männistö RH Kalkkinen N Bamford DH Purification and protein composition of PM2, the first lipid-containing bacterial virus to be isolated Virology 1999 262 2 364-374 10.1006/viro.1999.9838 10502515
-
(1999)
Virology
, vol.262
, Issue.2
, pp. 364-374
-
-
Kivelä, H.M.1
Männistö, R.H.2
Kalkkinen, N.3
Bamford, D.H.4
-
18
-
-
0015243803
-
A buoyant method for the determination of the superhelix density of closed circular DNA
-
10.1016/0022-2836(71)90127-6 4333613
-
Gray HB Jr. Upholt WB Vinograd J A buoyant method for the determination of the superhelix density of closed circular DNA Journal of molecular biology 1971 62 1 1-19 10.1016/0022-2836(71)90127-6 4333613
-
(1971)
Journal of Molecular Biology
, vol.62
, Issue.1
, pp. 1-19
-
-
Gray Jr., H.B.1
Upholt, W.B.2
Vinograd, J.3
-
19
-
-
0345672731
-
The complete genome sequence of PM2, the first lipid-containing bacterial virus to be isolated
-
10.1006/viro.1999.9837 10502514
-
Männistö RH Kivelä HM Paulin L Bamford DH Bamford JKH The complete genome sequence of PM2, the first lipid-containing bacterial virus to be isolated Virology 1999 262 2 355-363 10.1006/viro.1999.9837 10502514
-
(1999)
Virology
, vol.262
, Issue.2
, pp. 355-363
-
-
Männistö, R.H.1
Kivelä, H.M.2
Paulin, L.3
Bamford, D.H.4
Bamford, J.K.H.5
-
20
-
-
0036319176
-
Bacteriophage PM2 has a protein capsid surrounding a spherical proteinaceous lipid core
-
155172 12134022 10.1128/JVI.76.16.8169-8178.2002
-
Kivelä HM Kalkkinen N Bamford DH Bacteriophage PM2 has a protein capsid surrounding a spherical proteinaceous lipid core J Virol 2002 76 16 8169-8178 155172 12134022 10.1128/JVI.76.16.8169-8178.2002
-
(2002)
J Virol
, vol.76
, Issue.16
, pp. 8169-8178
-
-
Kivelä, H.M.1
Kalkkinen, N.2
Bamford, D.H.3
-
21
-
-
0017920056
-
Membrane-localized replication of bacteriophage PM2
-
10.1016/0042-6822(78)90243-X 619491
-
Brewer GJ Membrane-localized replication of bacteriophage PM2 Virology 1978 84 1 242-245 10.1016/0042-6822(78)90243-X 619491
-
(1978)
Virology
, vol.84
, Issue.1
, pp. 242-245
-
-
Brewer, G.J.1
-
22
-
-
18544395974
-
Transcription of bacteriophage PM2 involves phage-encoded regulators of heterologous origin
-
155381 12754225 10.1128/JB.185.11.3278-3287.2003
-
Männistö RH Grahn AM Bamford DH Bamford JKH Transcription of bacteriophage PM2 involves phage-encoded regulators of heterologous origin Journal of bacteriology 2003 185 11 3278-3287 155381 12754225 10.1128/JB.185.11.3278-3287.2003
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.11
, pp. 3278-3287
-
-
Männistö, R.H.1
Grahn, A.M.2
Bamford, D.H.3
Bamford, J.K.H.4
-
23
-
-
17144366252
-
In vitro DNA packaging of PRD1: A common mechanism for internal-membrane viruses
-
10.1016/j.jmb.2005.03.002 15826659
-
Strömsten NJ Bamford DH Bamford JKH In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses Journal of molecular biology 2005 348 3 617-629 10.1016/j.jmb.2005.03.002 15826659
-
(2005)
Journal of Molecular Biology
, vol.348
, Issue.3
, pp. 617-629
-
-
Strömsten, N.J.1
Bamford, D.H.2
Bamford, J.K.H.3
-
24
-
-
5144223072
-
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: Implications for the origins of chromosome segregation, cell division and viral capsid packaging
-
521647 15466593 10.1093/nar/gkh828
-
Iyer LM Makarova KS Koonin EV Aravind L Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: Implications for the origins of chromosome segregation, cell division and viral capsid packaging Nucleic acids research 2004 32 17 5260-5279 521647 15466593 10.1093/nar/ gkh828
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.17
, pp. 5260-5279
-
-
Iyer, L.M.1
Makarova, K.S.2
Koonin, E.V.3
Aravind, L.4
-
27
-
-
33748498458
-
Genome characterization of lipid-containing marine bacteriophage PM2 by transposon insertion mutagenesis
-
1563929 16940538 10.1128/JVI.00536-06
-
Krupovič M Vilen H Bamford JKH Kivelä HM Aalto JM Savilahti H Bamford DH Genome characterization of lipid-containing marine bacteriophage PM2 by transposon insertion mutagenesis J Virol 2006 80 18 9270-9278 1563929 16940538 10.1128/JVI.00536-06
-
(2006)
J Virol
, vol.80
, Issue.18
, pp. 9270-9278
-
-
Krupovič, M.1
Vilen, H.2
Bamford, J.K.H.3
Kivelä, H.M.4
Aalto, J.M.5
Savilahti, H.6
Bamford, D.H.7
-
28
-
-
0032518927
-
Sequence analysis of plasmid pRA2 from Pseudomonas alcaligenes NCIB 9867 (P25X) reveals a novel replication region
-
10.1111/j.1574-6968.1998.tb12815.x 9465390
-
Kwong SM Yeo CC Chuah D Poh CL Sequence analysis of plasmid pRA2 from Pseudomonas alcaligenes NCIB 9867 (P25X) reveals a novel replication region FEMS Microbiol Lett 1998 158 2 159-165 10.1111/ j.1574-6968.1998.tb12815.x 9465390
-
(1998)
FEMS Microbiol Lett
, vol.158
, Issue.2
, pp. 159-165
-
-
Kwong, S.M.1
Yeo, C.C.2
Chuah, D.3
Poh, C.L.4
-
29
-
-
0025196283
-
The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure
-
1692833
-
Reeves R Nissen MS The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure J Biol Chem 1990 265 15 8573-8582 1692833
-
(1990)
J Biol Chem
, vol.265
, Issue.15
, pp. 8573-8582
-
-
Reeves, R.1
Nissen, M.S.2
-
30
-
-
6344231824
-
The amino terminus of Epstein-Barr Virus (EBV) nuclear antigen 1 contains AT hooks that facilitate the replication and partitioning of latent EBV genomes by tethering them to cellular chromosomes
-
523237 15479791 10.1128/JVI.78.21.11487-11505.2004
-
Sears J Ujihara M Wong S Ott C Middeldorp J Aiyar A The amino terminus of Epstein-Barr Virus (EBV) nuclear antigen 1 contains AT hooks that facilitate the replication and partitioning of latent EBV genomes by tethering them to cellular chromosomes J Virol 2004 78 21 11487-11505 523237 15479791 10.1128/JVI.78.21.11487-11505.2004
-
(2004)
J Virol
, vol.78
, Issue.21
, pp. 11487-11505
-
-
Sears, J.1
Ujihara, M.2
Wong, S.3
Ott, C.4
Middeldorp, J.5
Aiyar, A.6
-
31
-
-
0033055057
-
The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks
-
15824 10077566 10.1073/pnas.96.6.2656
-
Chuang RY Kelly TJ The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks Proc Natl Acad Sci U S A 1999 96 6 2656-2661 15824 10077566 10.1073/pnas.96.6.2656
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.6
, pp. 2656-2661
-
-
Chuang, R.Y.1
Kelly, T.J.2
-
32
-
-
0036330981
-
The Phage Proteomic Tree: A genome-based taxonomy for phage
-
135240 12142423 10.1128/JB.184.16.4529-4535.2002
-
Rohwer F Edwards R The Phage Proteomic Tree: A genome-based taxonomy for phage Journal of bacteriology 2002 184 16 4529-4535 135240 12142423 10.1128/JB.184.16.4529-4535.2002
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.16
, pp. 4529-4535
-
-
Rohwer, F.1
Edwards, R.2
-
33
-
-
33645463597
-
Bacteriophage replication modules
-
10.1111/j.1574-6976.2006.00015.x 16594962
-
Weigel C Seitz H Bacteriophage replication modules FEMS Microbiol Rev 2006 30 3 321-381 10.1111/j.1574-6976.2006.00015.x 16594962
-
(2006)
FEMS Microbiol Rev
, vol.30
, Issue.3
, pp. 321-381
-
-
Weigel, C.1
Seitz, H.2
-
34
-
-
34147110201
-
Quasi-atomic model of bacteriophage t7 procapsid shell: Insights into the structure and evolution of a basic fold
-
10.1016/j.str.2007.03.004 17437718
-
Agirrezabala X Velazquez-Muriel JA Gomez-Puertas P Scheres SH Carazo JM Carrascosa JL Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold Structure 2007 15 4 461-472 10.1016/j.str.2007.03.004 17437718
-
(2007)
Structure
, vol.15
, Issue.4
, pp. 461-472
-
-
Agirrezabala, X.1
Velazquez-Muriel, J.A.2
Gomez-Puertas, P.3
Scheres, S.H.4
Carazo, J.M.5
Carrascosa, J.L.6
-
35
-
-
17044395121
-
Conservation of the capsid structure in tailed dsDNA bacteriophages: The pseudoatomic structure of phi29
-
10.1016/j.molcel.2005.03.013 15837419
-
Morais MC Choi KH Koti JS Chipman PR Anderson DL Rossmann MG Conservation of the capsid structure in tailed dsDNA bacteriophages: The pseudoatomic structure of phi29 Molecular cell 2005 18 2 149-159 10.1016/ j.molcel.2005.03.013 15837419
-
(2005)
Molecular Cell
, vol.18
, Issue.2
, pp. 149-159
-
-
Morais, M.C.1
Choi, K.H.2
Koti, J.S.3
Chipman, P.R.4
Anderson, D.L.5
Rossmann, M.G.6
-
36
-
-
0034703226
-
Topologically linked protein rings in the bacteriophage HK97 capsid
-
10.1126/science.289.5487.2129 11000116
-
Wikoff WR Liljas L Duda RL Tsuruta H Hendrix RW Johnson JE Topologically linked protein rings in the bacteriophage HK97 capsid Science 2000 289 5487 2129-2133 10.1126/science.289.5487.2129 11000116
-
(2000)
Science
, vol.289
, Issue.5487
, pp. 2129-2133
-
-
Wikoff, W.R.1
Liljas, L.2
Duda, R.L.3
Tsuruta, H.4
Hendrix, R.W.5
Johnson, J.E.6
-
37
-
-
33746837397
-
PRD1: Dissecting the Genome, Structure and Entry
-
Oxford, Oxford University Press Calendar R 2nd
-
Grahn MA Butcher SJ Bamford JKH Bamford DH PRD1: Dissecting the Genome, Structure and Entry The bacteriophages Oxford, Oxford University Press Calendar R 2nd 2006 161-170
-
(2006)
The Bacteriophages
, pp. 161-170
-
-
Grahn, M.A.1
Butcher, S.J.2
Bamford, J.K.H.3
Bamford, D.H.4
-
38
-
-
33947202944
-
Phage lysis
-
Oxford, Oxford University Press Calendar R 2nd
-
Young R Wang IN Phage lysis The Bacteriophages Oxford, Oxford University Press Calendar R 2nd 2006 104-125
-
(2006)
The Bacteriophages
, pp. 104-125
-
-
Young, R.1
Wang, I.N.2
-
39
-
-
34249993104
-
A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophage
-
10.1111/j.1365-2958.2007.05769.x 17555443
-
Krupovič M Daugelavičius R Bamford DH A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophage Mol Microbiol 2007 64 6 1635-1648 10.1111/j.1365-2958.2007.05769.x 17555443
-
(2007)
Mol Microbiol
, vol.64
, Issue.6
, pp. 1635-1648
-
-
Krupovič, M.1
Daugelavičius, R.2
Bamford, D.H.3
-
40
-
-
3142514466
-
The impact of prophages on bacterial chromosomes
-
10.1111/j.1365-2958.2004.04113.x 15225299
-
Canchaya C Fournous G Brussow H The impact of prophages on bacterial chromosomes Mol Microbiol 2004 53 1 9-18 10.1111/ j.1365-2958.2004.04113.x 15225299
-
(2004)
Mol Microbiol
, vol.53
, Issue.1
, pp. 9-18
-
-
Canchaya, C.1
Fournous, G.2
Brussow, H.3
-
41
-
-
0037825641
-
Prophages and bacterial genomics: What have we learned so far?
-
10.1046/j.1365-2958.2003.03580.x 12886937
-
Casjens S Prophages and bacterial genomics: What have we learned so far? Mol Microbiol 2003 49 2 277-300 10.1046/j.1365-2958.2003.03580.x 12886937
-
(2003)
Mol Microbiol
, vol.49
, Issue.2
, pp. 277-300
-
-
Casjens, S.1
-
42
-
-
0037030684
-
Filamentous phage integration requires the host recombinases XerC and XerD
-
10.1038/nature00782 12050668
-
Huber KE Waldor MK Filamentous phage integration requires the host recombinases XerC and XerD Nature 2002 417 6889 656-659 10.1038/ nature00782 12050668
-
(2002)
Nature
, vol.417
, Issue.6889
, pp. 656-659
-
-
Huber, K.E.1
Waldor, M.K.2
-
43
-
-
29444442484
-
Switches in bacteriophage lambda development
-
10.1146/annurev.genet.39.073003.113656 16285866
-
Oppenheim AB Kobiler O Stavans J Court DL Adhya S Switches in bacteriophage lambda development Annu Rev Genet 2005 39 409-429 10.1146/ annurev.genet.39.073003.113656 16285866
-
(2005)
Annu Rev Genet
, vol.39
, pp. 409-429
-
-
Oppenheim, A.B.1
Kobiler, O.2
Stavans, J.3
Court, D.L.4
Adhya, S.5
-
44
-
-
34548188900
-
-
The NCBI Entrez Taxonomy homepage
-
The NCBI Entrez Taxonomy homepage http://www.ncbi.nlm.nih.gov/entrez/ query.fcgi?db=Taxonomy
-
-
-
-
46
-
-
0034053843
-
Virioplankton: Viruses in aquatic ecosystems
-
98987 10704475 10.1128/MMBR.64.1.69-114.2000
-
Wommack KE Colwell RR Virioplankton: Viruses in aquatic ecosystems Microbiol Mol Biol Rev 2000 64 1 69-114 98987 10704475 10.1128/ MMBR.64.1.69-114.2000
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, Issue.1
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
47
-
-
0035007418
-
Frequency of morphological phage descriptions in the year 2000. Brief review
-
10.1007/s007050170120 11448025
-
Ackermann HW Frequency of morphological phage descriptions in the year 2000. Brief review Archives of virology 2001 146 5 843-857 10.1007/ s007050170120 11448025
-
(2001)
Archives of Virology
, vol.146
, Issue.5
, pp. 843-857
-
-
Ackermann, H.W.1
-
48
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
10.1038/340467a0 2755508
-
Bergh O Børsheim KY Bratbak G Heldal M High abundance of viruses found in aquatic environments Nature 1989 340 6233 467-468 10.1038/ 340467a0 2755508
-
(1989)
Nature
, vol.340
, Issue.6233
, pp. 467-468
-
-
Bergh, O.1
Børsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
49
-
-
0025199035
-
Viruses as Partners in Spring Bloom Microbial Trophodynamics
-
184418 16348190
-
Bratbak G Heldal M Norland S Thingstad TF Viruses as Partners in Spring Bloom Microbial Trophodynamics Appl Environ Microbiol 1990 56 5 1400-1405 184418 16348190
-
(1990)
Appl Environ Microbiol
, vol.56
, Issue.5
, pp. 1400-1405
-
-
Bratbak, G.1
Heldal, M.2
Norland, S.3
Thingstad, T.F.4
-
50
-
-
0025198342
-
Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy
-
183343 2306088
-
Børsheim KY Bratbak G Heldal M Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy Appl Environ Microbiol 1990 56 2 352-356 183343 2306088
-
(1990)
Appl Environ Microbiol
, vol.56
, Issue.2
, pp. 352-356
-
-
Børsheim, K.Y.1
Bratbak, G.2
Heldal, M.3
-
51
-
-
0025769144
-
Abundance of Viruses in Marine Waters: Assessment by Epifluorescence and Transmission Electron Microscopy
-
183648 16348556
-
Hara S Terauchi K Koike I Abundance of Viruses in Marine Waters: Assessment by Epifluorescence and Transmission Electron Microscopy Appl Environ Microbiol 1991 57 9 2731-2734 183648 16348556
-
(1991)
Appl Environ Microbiol
, vol.57
, Issue.9
, pp. 2731-2734
-
-
Hara, S.1
Terauchi, K.2
Koike, I.3
-
53
-
-
33645019226
-
Isolation and characterization of Thermus bacteriophages
-
10.1007/s00705-005-0667-x 16308675
-
Yu MX Slater MR Ackermann HW Isolation and characterization of Thermus bacteriophages Archives of virology 2006 151 4 663-679 10.1007/ s00705-005-0667-x 16308675
-
(2006)
Archives of Virology
, vol.151
, Issue.4
, pp. 663-679
-
-
Yu, M.X.1
Slater, M.R.2
Ackermann, H.W.3
-
54
-
-
33751059692
-
The marine viromes of four oceanic regions
-
1634881 17090214 10.1371/journal.pbio.0040368
-
Angly FE Felts B Breitbart M Salamon P Edwards RA Carlson C Chan AM Haynes M Kelley S Liu H Mahaffy JM Mueller JE Nulton J Olson R Parsons R Rayhawk S Suttle CA Rohwer F The marine viromes of four oceanic regions PLoS biology 2006 4 11 e368 1634881 17090214 10.1371/journal.pbio.0040368
-
(2006)
PLoS Biology
, vol.4
, Issue.11
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
Chan, A.M.7
Haynes, M.8
Kelley, S.9
Liu, H.10
Mahaffy, J.M.11
Mueller, J.E.12
Nulton, J.13
Olson, R.14
Parsons, R.15
Rayhawk, S.16
Suttle, C.A.17
Rohwer, F.18
-
55
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic acids research 1997 25 17 3389-3402 146917 9254694 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
56
-
-
34548180001
-
JPRED - Protein secondary structure prediction
-
JPRED - protein secondary structure prediction http://www.compbio.dundee.ac.uk/~www-jpred
-
-
-
-
57
-
-
0038594314
-
TMpred - Prediction of transmembrane regions and orientation
-
TMpred - prediction of transmembrane regions and orientation http://www.ch.embnet.org/software/TMPRED_form.html
-
-
-
-
58
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Web Server issue 1160169 15980461 10.1093/nar/gki408
-
Söding J Biegert A Lupas AN The HHpred interactive server for protein homology detection and structure prediction Nucleic acids research 2005 33 Web Server issue W244-8 1160169 15980461 10.1093/nar/ gki408
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Söding, J.1
Biegert, A.2
Lupas, A.N.3
-
59
-
-
0020964297
-
Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements
-
10.1016/S0022-2836(83)80282-4 6864790
-
Dunn JJ Studier FW Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements Journal of molecular biology 1983 166 4 477-535 10.1016/S0022-2836(83)80282-4 6864790
-
(1983)
Journal of Molecular Biology
, vol.166
, Issue.4
, pp. 477-535
-
-
Dunn, J.J.1
Studier, F.W.2
-
60
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
-
1079782 15828858 10.1371/journal.pbio.0030144
-
Sullivan MB Coleman ML Weigele P Rohwer F Chisholm SW Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations PLoS biology 2005 3 5 e144 1079782 15828858 10.1371/ journal.pbio.0030144
-
(2005)
PLoS Biology
, vol.3
, Issue.5
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
61
-
-
0038340041
-
The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment
-
12781722
-
Hardies SC Comeau AM Serwer P Suttle CA The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment Virology 2003 310 2 359-371 12781722
-
(2003)
Virology
, vol.310
, Issue.2
, pp. 359-371
-
-
Hardies, S.C.1
Comeau, A.M.2
Serwer, P.3
Suttle, C.A.4
-
62
-
-
0142152459
-
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C
-
219397 14563879 10.1128/JB.185.21.6434-6447.2003
-
Seguritan V Feng IW Rohwer F Swift M Segall AM Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C Journal of bacteriology 2003 185 21 6434-6447 219397 14563879 10.1128/ JB.185.21.6434-6447.2003
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.21
, pp. 6434-6447
-
-
Seguritan, V.1
Feng, I.W.2
Rohwer, F.3
Swift, M.4
Segall, A.M.5
-
63
-
-
17644410730
-
The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains
-
1082820 15838046 10.1128/JB.187.9.3188-3200.2005
-
Mann NH Clokie MR Millard A Cook A Wilson WH Wheatley PJ Letarov A Krisch HM The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains Journal of bacteriology 2005 187 9 3188-3200 1082820 15838046 10.1128/ JB.187.9.3188-3200.2005
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.9
, pp. 3188-3200
-
-
Mann, N.H.1
Clokie, M.R.2
Millard, A.3
Cook, A.4
Wilson, W.H.5
Wheatley, P.J.6
Letarov, A.7
Krisch, H.M.8
-
64
-
-
0041386480
-
Complete genome sequence of the broad-host-range vibriophage KVP40: Comparative genomics of a T4-related bacteriophage
-
180978 12923095 10.1128/JB.185.17.5220-5233.2003
-
Miller ES Heidelberg JF Eisen JA Nelson WC Durkin AS Ciecko A Feldblyum TV White O Paulsen IT Nierman WC Lee J Szczypinski B Fraser CM Complete genome sequence of the broad-host-range vibriophage KVP40: Comparative genomics of a T4-related bacteriophage Journal of bacteriology 2003 185 17 5220-5233 180978 12923095 10.1128/JB.185.17.5220-5233.2003
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.17
, pp. 5220-5233
-
-
Miller, E.S.1
Heidelberg, J.F.2
Eisen, J.A.3
Nelson, W.C.4
Durkin, A.S.5
Ciecko, A.6
Feldblyum, T.V.7
White, O.8
Paulsen, I.T.9
Nierman, W.C.10
Lee, J.11
Szczypinski, B.12
Fraser, C.M.13
-
65
-
-
0036443086
-
The complete nucleotide sequence of the Vibrio harveyi bacteriophage VHML
-
10.1046/j.1365-2672.2002.01776.x 12452967
-
Oakey HJ Cullen BR Owens L The complete nucleotide sequence of the Vibrio harveyi bacteriophage VHML J Appl Microbiol 2002 93 6 1089-1098 10.1046/j.1365-2672.2002.01776.x 12452967
-
(2002)
J Appl Microbiol
, vol.93
, Issue.6
, pp. 1089-1098
-
-
Oakey, H.J.1
Cullen, B.R.2
Owens, L.3
-
67
-
-
20444405294
-
Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia
-
1151857 15933034 10.1128/AEM.71.6.3311-3320.2005
-
Paul JH Williamson SJ Long A Authement RN John D Segall AM Rohwer FL Androlewicz M Patterson S Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia Appl Environ Microbiol 2005 71 6 3311-3320 1151857 15933034 10.1128/ AEM.71.6.3311-3320.2005
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.6
, pp. 3311-3320
-
-
Paul, J.H.1
Williamson, S.J.2
Long, A.3
Authement, R.N.4
John, D.5
Segall, A.M.6
Rohwer, F.L.7
Androlewicz, M.8
Patterson, S.9
-
68
-
-
15444372597
-
Genomic analysis of bacteriophage PhiJL001: Insights into its interaction with a sponge-associated alpha-proteobacterium
-
Lohr JE, Chen F, Hill RT: Genomic analysis of bacteriophage PhiJL001: Insights into its interaction with a sponge-associated alpha-proteobacterium. Appl Environ Microbiol 2005, 71(3):1598-1609.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.3
, pp. 1598-1609
-
-
Lohr, J.E.1
Chen, F.2
Hill, R.T.3
|