메뉴 건너뛰기




Volumn 7, Issue 3, 2011, Pages

On the origin of DNA genomes: Evolution of the division of labor between template and catalyst in model replicator systems

Author keywords

[No Author keywords available]

Indexed keywords

CATALYST ACTIVITY; ECONOMIC AND SOCIAL EFFECTS; GENES; RNA;

EID: 79953652239     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002024     Document Type: Article
Times cited : (57)

References (48)
  • 2
    • 0003604405 scopus 로고    scopus 로고
    • Cold Spring Harbor, N.Y., Cold Spring Harbor Laboratory Press
    • Gesteland RF, Cech T, Atkins JF, (2006) The RNA world Cold Spring Harbor, N.Y. Cold Spring Harbor Laboratory Press.
    • (2006) The RNA World
    • Gesteland, R.F.1    Cech, T.2    Atkins, J.F.3
  • 3
    • 36849148382 scopus 로고
    • Origin of life-the RNA world
    • Gilbert W, (1986) Origin of life-the RNA world. Nature 319: 618-618.
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 4
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick FH, (1968) The origin of the genetic code. J Mol Biol 38: 367-379.
    • (1968) J Mol Biol , vol.38 , pp. 367-379
    • Crick, F.H.1
  • 5
    • 0014369024 scopus 로고
    • Evolution of the genetic apparatus
    • Orgel LE, (1968) Evolution of the genetic apparatus. J Mol Biol 38: 381-393.
    • (1968) J Mol Biol , vol.38 , pp. 381-393
    • Orgel, L.E.1
  • 7
    • 70349995865 scopus 로고    scopus 로고
    • Natural and unnatural ribozymes: back to the primordial RNA world
    • Talini G, Gallori E, Maurel MC, (2009) Natural and unnatural ribozymes: back to the primordial RNA world. Res Microbiol 160: 457-465.
    • (2009) Res Microbiol , vol.160 , pp. 457-465
    • Talini, G.1    Gallori, E.2    Maurel, M.C.3
  • 8
    • 34249672905 scopus 로고    scopus 로고
    • Ribozyme catalysis of metabolism in the RNA world
    • Chen X, Li N, Ellington AD, (2007) Ribozyme catalysis of metabolism in the RNA world. Chem Biodivers 4: 633-655.
    • (2007) Chem Biodivers , vol.4 , pp. 633-655
    • Chen, X.1    Li, N.2    Ellington, A.D.3
  • 10
    • 79953671700 scopus 로고    scopus 로고
    • Nucleic acid enzymes (ribozymes and deoxyribozymes): in vitro selection and application
    • In: Begley TP, editors, John Wiley & Sons, Inc
    • Silverman SK, (2008) Nucleic acid enzymes (ribozymes and deoxyribozymes): in vitro selection and application. In: Begley TP, editors. Wiley Encyclopedia of Chemical Biology: John Wiley & Sons, Inc.
    • (2008) Wiley Encyclopedia of Chemical Biology:
    • Silverman, S.K.1
  • 12
    • 0016628096 scopus 로고
    • Different susceptibility of DNA and RNA to cleavage by metal-ions
    • Butzow JJ, Eichhorn GL, (1975) Different susceptibility of DNA and RNA to cleavage by metal-ions. Nature 254: 358-359.
    • (1975) Nature , vol.254 , pp. 358-359
    • Butzow, J.J.1    Eichhorn, G.L.2
  • 13
    • 0023785307 scopus 로고
    • The evolutionary transition from RNA to DNA in early cells
    • Lazcano A, Guerrero R, Margulis L, Oro J, (1988) The evolutionary transition from RNA to DNA in early cells. J Mol Evol 27: 283-290.
    • (1988) J Mol Evol , vol.27 , pp. 283-290
    • Lazcano, A.1    Guerrero, R.2    Margulis, L.3    Oro, J.4
  • 14
    • 24744450331 scopus 로고    scopus 로고
    • The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells
    • Forterre P, (2005) The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie 87: 793-803.
    • (2005) Biochimie , vol.87 , pp. 793-803
    • Forterre, P.1
  • 15
    • 27744591844 scopus 로고    scopus 로고
    • On the origin of genomes and cells within inorganic compartments
    • Koonin EV, Martin W, (2005) On the origin of genomes and cells within inorganic compartments. Trends Genet 21: 647-654.
    • (2005) Trends Genet , vol.21 , pp. 647-654
    • Koonin, E.V.1    Martin, W.2
  • 16
    • 47949085051 scopus 로고    scopus 로고
    • Catalytic DNA (deoxyribozymes) for synthetic applications-current abilities and future prospects
    • Silverman SK, (2008) Catalytic DNA (deoxyribozymes) for synthetic applications-current abilities and future prospects. Chem Commun (Camb) pp. 3467-3485.
    • (2008) Chem Commun (Camb) , pp. 3467-3485
    • Silverman, S.K.1
  • 17
    • 0028675028 scopus 로고
    • A DNA enzyme that cleaves RNA
    • Breaker RR, Joyce GF, (1994) A DNA enzyme that cleaves RNA. Chem Biol 1: 223-229.
    • (1994) Chem Biol , vol.1 , pp. 223-229
    • Breaker, R.R.1    Joyce, G.F.2
  • 18
    • 77957307747 scopus 로고    scopus 로고
    • The structural diversity of deoxyribozymes
    • McManus SA, Li Y, (2010) The structural diversity of deoxyribozymes. Molecules 15: 6269-6284.
    • (2010) Molecules , vol.15 , pp. 6269-6284
    • McManus, S.A.1    Li, Y.2
  • 19
    • 77950819888 scopus 로고    scopus 로고
    • Expanding the catalytic repertoire of ribozymes and deoxyribozymes beyond RNA substrates
    • Franzen S, (2010) Expanding the catalytic repertoire of ribozymes and deoxyribozymes beyond RNA substrates. Curr Opin Mol Ther 12: 223-232.
    • (2010) Curr Opin Mol Ther , vol.12 , pp. 223-232
    • Franzen, S.1
  • 20
    • 0031042722 scopus 로고    scopus 로고
    • Choosing the right sugar: how polymerases select a nucleotide substrate
    • Joyce CM, (1997) Choosing the right sugar: how polymerases select a nucleotide substrate. Proc Natl Acad Sci U S A 94: 1619-1622.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 1619-1622
    • Joyce, C.M.1
  • 21
    • 70549111391 scopus 로고    scopus 로고
    • RNA polymerase fidelity and transcriptional proofreading
    • Sydow JF, Cramer P, (2009) RNA polymerase fidelity and transcriptional proofreading. Curr Opin Struct Biol 19: 732-739.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 732-739
    • Sydow, J.F.1    Cramer, P.2
  • 22
    • 37549070647 scopus 로고    scopus 로고
    • The role of complex formation and deleterious mutations for the stability of RNA-Like replicator systems
    • Takeuchi N, Hogeweg P, (2007) The role of complex formation and deleterious mutations for the stability of RNA-Like replicator systems. J Mol Evol 65: 668-686.
    • (2007) J Mol Evol , vol.65 , pp. 668-686
    • Takeuchi, N.1    Hogeweg, P.2
  • 23
    • 18744431786 scopus 로고    scopus 로고
    • Evolutionary stabilization of generous replicases by complex formation
    • Fuchslin RM, Altmeyer S, McCaskill JS, (2004) Evolutionary stabilization of generous replicases by complex formation. Eur Phys J B 38: 103-110.
    • (2004) Eur Phys J B , vol.38 , pp. 103-110
    • Fuchslin, R.M.1    Altmeyer, S.2    McCaskill, J.S.3
  • 24
    • 44249094377 scopus 로고    scopus 로고
    • Evolution of complexity in RNA-like replicator systems
    • Takeuchi N, Hogeweg P, (2008) Evolution of complexity in RNA-like replicator systems. Biol Direct 3: 11.
    • (2008) Biol Direct , vol.3 , pp. 11
    • Takeuchi, N.1    Hogeweg, P.2
  • 25
    • 0018785810 scopus 로고
    • Hypercycles and the origin of life
    • Maynard Smith J, (1979) Hypercycles and the origin of life. Nature 280: 445-446.
    • (1979) Nature , vol.280 , pp. 445-446
    • Maynard Smith, J.1
  • 26
  • 27
    • 55149106796 scopus 로고    scopus 로고
    • Prebiotic replicase evolution in a surface-bound metabolic system: parasites as a source of adaptive evolution
    • Konnyu B, Czaran T, Szathmary E, (2008) Prebiotic replicase evolution in a surface-bound metabolic system: parasites as a source of adaptive evolution. Bmc Evol Biol 8: 267.
    • (2008) Bmc Evol Biol , vol.8 , pp. 267
    • Konnyu, B.1    Czaran, T.2    Szathmary, E.3
  • 28
    • 0023661947 scopus 로고
    • Group selection of early replicators and the origin of life
    • Szathmary E, Demeter L, (1987) Group selection of early replicators and the origin of life. J Theor Biol 128: 463-486.
    • (1987) J Theor Biol , vol.128 , pp. 463-486
    • Szathmary, E.1    Demeter, L.2
  • 29
    • 44949280567 scopus 로고
    • Spiral wave structure in pre-biotic evolution-hypercycles stable against parasites
    • Boerlijst MC, Hogeweg P, (1991) Spiral wave structure in pre-biotic evolution-hypercycles stable against parasites. Physica D 48: 17-28.
    • (1991) Physica D , vol.48 , pp. 17-28
    • Boerlijst, M.C.1    Hogeweg, P.2
  • 30
    • 0019831016 scopus 로고
    • Origin of life between scylla and charybdis
    • Niesert U, Harnasch D, Bresch C, (1981) Origin of life between scylla and charybdis. J Mol Evol 17: 348-353.
    • (1981) J Mol Evol , vol.17 , pp. 348-353
    • Niesert, U.1    Harnasch, D.2    Bresch, C.3
  • 31
    • 0030881571 scopus 로고    scopus 로고
    • Spatially resolved in vitro molecular ecology
    • McCaskill JS, (1997) Spatially resolved in vitro molecular ecology. Biophys Chem 66: 145-158.
    • (1997) Biophys Chem , vol.66 , pp. 145-158
    • McCaskill, J.S.1
  • 32
    • 0142135399 scopus 로고    scopus 로고
    • Multilevel selection in models of prebiotic evolution: Compartments and spatial self-organization
    • Hogeweg P, Takeuchi N, (2003) Multilevel selection in models of prebiotic evolution: Compartments and spatial self-organization. Origins Life Evol B 33: 375-403.
    • (2003) Origins Life Evol B , vol.33 , pp. 375-403
    • Hogeweg, P.1    Takeuchi, N.2
  • 33
    • 77957733248 scopus 로고    scopus 로고
    • Reconstructing the emergence of cellular life through the synthesis of model protocells
    • Mansy SS, Szostak JW, (2009) Reconstructing the emergence of cellular life through the synthesis of model protocells. Cold Spring Harb Symp Quant Biol 74: 47-54.
    • (2009) Cold Spring Harb Symp Quant Biol , vol.74 , pp. 47-54
    • Mansy, S.S.1    Szostak, J.W.2
  • 35
    • 73449144509 scopus 로고    scopus 로고
    • Multilevel selection in models of prebiotic evolution II: a direct comparison of compartmentalization and spatial self-organization
    • Takeuchi N, Hogeweg P, (2009) Multilevel selection in models of prebiotic evolution II: a direct comparison of compartmentalization and spatial self-organization. PLoS Comput Biol 5: e1000542.
    • (2009) PLoS Comput Biol , vol.5
    • Takeuchi, N.1    Hogeweg, P.2
  • 37
    • 0000135489 scopus 로고
    • Simulation of biological cell sorting using a two-dimensional extended Potts model
    • Graner F, Glazier JA, (1992) Simulation of biological cell sorting using a two-dimensional extended Potts model. Phys Rev Lett 69: 2013-2016.
    • (1992) Phys Rev Lett , vol.69 , pp. 2013-2016
    • Graner, F.1    Glazier, J.A.2
  • 38
    • 4444281964 scopus 로고    scopus 로고
    • The emergence of competition between model protocells
    • Chen IA, Roberts RW, Szostak JW, (2004) The emergence of competition between model protocells. Science 305: 1474-1476.
    • (2004) Science , vol.305 , pp. 1474-1476
    • Chen, I.A.1    Roberts, R.W.2    Szostak, J.W.3
  • 39
    • 0028176205 scopus 로고
    • Competition and biodiversity in spatially structured habitats
    • Tilman D, (1994) Competition and biodiversity in spatially structured habitats. Ecology 75: 2-16.
    • (1994) Ecology , vol.75 , pp. 2-16
    • Tilman, D.1
  • 40
    • 0001229327 scopus 로고
    • Predator-mediated coexistence-non-equilibrium model
    • Caswell H, (1978) Predator-mediated coexistence-non-equilibrium model. Am Nat 112: 127-154.
    • (1978) Am Nat , vol.112 , pp. 127-154
    • Caswell, H.1
  • 41
    • 0015296236 scopus 로고
    • Interspecific competition, predation and species diversity: a comment
    • Cramer NF, May RM, (1972) Interspecific competition, predation and species diversity: a comment. J Theor Biol 34: 289-293.
    • (1972) J Theor Biol , vol.34 , pp. 289-293
    • Cramer, N.F.1    May, R.M.2
  • 42
    • 17544391237 scopus 로고
    • Central dogma of mollecular biology
    • Crick F, (1971) Central dogma of mollecular biology. Tsitologiia 13: 906-910.
    • (1971) Tsitologiia , vol.13 , pp. 906-910
    • Crick, F.1
  • 43
    • 0001278206 scopus 로고
    • Structured demes and trait-group variation
    • Wilson DS, (1979) Structured demes and trait-group variation. Amer Nat 113: 606-610.
    • (1979) Amer Nat , vol.113 , pp. 606-610
    • Wilson, D.S.1
  • 44
    • 63049130753 scopus 로고    scopus 로고
    • DNA before proteins? Recent discoveries in nucleic acid catalysis strengthen the case
    • Burton AS, Lehman N, (2009) DNA before proteins? Recent discoveries in nucleic acid catalysis strengthen the case. Astrobiology 9: 125-130.
    • (2009) Astrobiology , vol.9 , pp. 125-130
    • Burton, A.S.1    Lehman, N.2
  • 46
    • 0033199713 scopus 로고    scopus 로고
    • Did DNA replication evolve twice independently?
    • Leipe DD, Aravind L, Koonin EV, (1999) Did DNA replication evolve twice independently? Nucleic Acids Res 27: 3389-3401.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3389-3401
    • Leipe, D.D.1    Aravind, L.2    Koonin, E.V.3
  • 47
    • 0036354167 scopus 로고    scopus 로고
    • On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules
    • Kaneko K, Yomo T, (2002) On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules. J Theor Biol 214: 563-576.
    • (2002) J Theor Biol , vol.214 , pp. 563-576
    • Kaneko, K.1    Yomo, T.2
  • 48
    • 77957296390 scopus 로고    scopus 로고
    • Selfishness versus functional cooperation in a stochastic protocell model
    • Zintzaras E, Santos M, Szathmary E, (2010) Selfishness versus functional cooperation in a stochastic protocell model. J Theor Biol 267: 605-613.
    • (2010) J Theor Biol , vol.267 , pp. 605-613
    • Zintzaras, E.1    Santos, M.2    Szathmary, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.