-
1
-
-
0029565858
-
Vaccinia virus DNA replication: A short review
-
Beaud, G. 1995. Vaccinia virus DNA replication: a short review. Biochimie 77:774-779.
-
(1995)
Biochimie
, vol.77
, pp. 774-779
-
-
Beaud, G.1
-
2
-
-
0035933282
-
Holliday junction resolving enzymes of archaeal viruses SIRV1 and SIRV2
-
Birkenbihl, R. P., K. Neef, D. Prangishvili, and B. Kemper. 2001. Holliday junction resolving enzymes of archaeal viruses SIRV1 and SIRV2. J. Mol. Biol. 309:1067-1076.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 1067-1076
-
-
Birkenbihl, R.P.1
Neef, K.2
Prangishvili, D.3
Kemper, B.4
-
3
-
-
0035264536
-
The genome of the archaeal virus SIRV1 has features in common with genomes of eukaryal viruses
-
Blum, H., W. Zillig, S. Mallok, H. Domdey, and D. Prangishvili. 2001. The genome of the archaeal virus SIRV1 has features in common with genomes of eukaryal viruses. Virology 281:6-9.
-
(2001)
Virology
, vol.281
, pp. 6-9
-
-
Blum, H.1
Zillig, W.2
Mallok, S.3
Domdey, H.4
Prangishvili, D.5
-
4
-
-
67349214924
-
Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains
-
Boer, D. R., J. A. Ruiz-Maso, J. R. Lopez-Blanco, A. G. Blanco, M. Vives- Llacer, P. Chacon, I. Uson, F. X. Gomis-Ruth, M. Espinosa, O. Llorca, G. del Solar, and M. Coll. 2009. Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains. EMBO J. 28:1666-1678.
-
(2009)
EMBO J.
, vol.28
, pp. 1666-1678
-
-
Boer, D.R.1
Ruiz-Maso, J.A.2
Lopez-Blanco, J.R.3
Blanco, A.G.4
Vives- Llacer, M.5
Chacon, P.6
Uson, I.7
Gomis-Ruth, F.X.8
Espinosa, M.9
Llorca, O.10
Del Solar, G.11
Coll, M.12
-
5
-
-
0036678683
-
The structure of a replication initiator unites diverse aspects of nucleic acid metabolism
-
Campos-Olivas, R., J. M. Louis, D. Clerot, B. Gronenborn, and A. M. Gronenborn. 2002. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc. Natl. Acad. Sci. U. S. A. 99:10310-10315.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 10310-10315
-
-
Campos-Olivas, R.1
Louis, J.M.2
Clerot, D.3
Gronenborn, B.4
Gronenborn, A.M.5
-
6
-
-
0002256769
-
Parvovirus DNA replication
-
M. L. DePamphilis (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Cotmore, S. F., and P. Tattersall. 1996. Parvovirus DNA replication, p. 799-813. In M. L. DePamphilis (ed.), DNA replication in eukaryotic cells, vol. 31. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1996)
DNA Replication in Eukaryotic Cells
, vol.31
, pp. 799-813
-
-
Cotmore, S.F.1
Tattersall, P.2
-
7
-
-
33747052534
-
DNA cleavage by the A22R resolvase of vaccinia virus
-
Culyba, M. J., J. E. Harrison, Y. Hwang, and F. D. Bushman. 2006. DNA cleavage by the A22R resolvase of vaccinia virus. Virology 352:466-476.
-
(2006)
Virology
, vol.352
, pp. 466-476
-
-
Culyba, M.J.1
Harrison, J.E.2
Hwang, Y.3
Bushman, F.D.4
-
8
-
-
0034785376
-
Vaccinia virus telomeres: Interaction with the viral I1, I6, and K4 proteins
-
DeMasi, J., S. Du, D. Lennon, and P. Traktman. 2001. Vaccinia virus telomeres: interaction with the viral I1, I6, and K4 proteins. J. Virol. 75:10090-10105.
-
(2001)
J. Virol.
, vol.75
, pp. 10090-10105
-
-
Demasi, J.1
Du, S.2
Lennon, D.3
Traktman, P.4
-
9
-
-
36749088428
-
Poxvirus DNA primase
-
De Silva, F. S., W. Lewis, P. Berglund, E. V. Koonin, and B. Moss. 2007. Poxvirus DNA primase. Proc. Natl. Acad. Sci. U. S. A. 104:18724-18729.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 18724-18729
-
-
De Silva, F.S.1
Lewis, W.2
Berglund, P.3
Koonin, E.V.4
Moss, B.5
-
10
-
-
0029796546
-
Vaccinia virus DNA replication: Two hundred base pairs of telomeric sequence confer optimal replication efficiency on minichromosome templates
-
Du, S., and P. Traktman. 1996. Vaccinia virus DNA replication: two hundred base pairs of telomeric sequence confer optimal replication efficiency on minichromosome templates. Proc. Natl. Acad. Sci. U. S. A. 93:9693-9698.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 9693-9698
-
-
Du, S.1
Traktman, P.2
-
11
-
-
77949525377
-
Replicative intermediates of maize streak virus found during leaf development
-
Erdmann, J. B., D. N. Shepherd, D. P. Martin, A. Varsani, E. P. Rybicki, and H. Jeske. 2010. Replicative intermediates of maize streak virus found during leaf development. J. Gen. Virol. 91:1077-1081.
-
(2010)
J. Gen. Virol.
, vol.91
, pp. 1077-1081
-
-
Erdmann, J.B.1
Shepherd, D.N.2
Martin, D.P.3
Varsani, A.4
Rybicki, E.P.5
Jeske, H.6
-
12
-
-
0034255274
-
Bacterial-type DNA Holliday junction resolvases in eukaryotic viruses
-
Garcia, A. D., L. Aravind, E. Koonin, and B. Moss. 2000. Bacterial-type DNA Holliday junction resolvases in eukaryotic viruses. Proc. Natl. Acad. Sci. U. S. A. 97:8926-8931.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 8926-8931
-
-
Garcia, A.D.1
Aravind, L.2
Koonin, E.3
Moss, B.4
-
13
-
-
0036671409
-
Structural unity among viral origin binding proteins: Crystal structure of the n uclease domain of adeno-associated virus Rep
-
Hickman, A. B., D. R. Ronning, R. M. Kotin, and F. Dyda. 2002. Structural unity among viral origin binding proteins: crystal structure of the n uclease domain of adeno-associated virus Rep. Mol. Cell 10:327-337.
-
(2002)
Mol. Cell
, vol.10
, pp. 327-337
-
-
Hickman, A.B.1
Ronning, D.R.2
Kotin, R.M.3
Dyda, F.4
-
14
-
-
0026748738
-
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
-
Ilyina, T. V., and E. V. Koonin. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 20:3279-3285.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3279-3285
-
-
Ilyina, T.V.1
Koonin, E.V.2
-
15
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E., and K. Henrick. 2007. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372:774-797.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
16
-
-
22544441094
-
ProFunc: A server for predicting protein function from 3D structure
-
Laskowski, R. A., J. D. Watson, and J. M. Thornton. 2005. ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res. 33:W89-W93.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Laskowski, R.A.1
Watson, J.D.2
Thornton, J.M.3
-
17
-
-
0029042501
-
In vitro cleavage and joining at the viral origin of repli- cation by the replication initiator protein of tomato yellow leaf curl virus
-
Laufs, J., W. Traut, F. Heyraud, V. Matzeit, S. G. Rogers, J. Schell, and B. Gronenborn. 1995. In vitro cleavage and joining at the viral origin of repli- cation by the replication initiator protein of tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. U. S. A. 92:3879-3883.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 3879-3883
-
-
Laufs, J.1
Traut, W.2
Heyraud, F.3
Matzeit, V.4
Rogers, S.G.5
Schell, J.6
Gronenborn, B.7
-
18
-
-
58949085244
-
An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol
-
Liu, H., and J. H. Naismith. 2008. An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol. BMC Biotechnol. 8:91.
-
(2008)
BMC Biotechnol.
, vol.8
, pp. 91
-
-
Liu, H.1
Naismith, J.H.2
-
19
-
-
67650979184
-
Conversion of linear DNA with hairpin telomeres into a circular molecule in the course of phage N15 lytic replication
-
Mardanov, A. V., and N. V. Ravin. 2009. Conversion of linear DNA with hairpin telomeres into a circular molecule in the course of phage N15 lytic replication. J. Mol. Biol. 391:261-268.
-
(2009)
J. Mol. Biol.
, vol.391
, pp. 261-268
-
-
Mardanov, A.V.1
Ravin, N.V.2
-
20
-
-
0028024632
-
Active site of the replication protein of the rolling circle plasmid pC194
-
Noirot-Gros, M. F., V. Bidnenko, and S. D. Ehrlich. 1994. Active site of the replication protein of the rolling circle plasmid pC194. EMBO J. 13:4412-4420.
-
(1994)
EMBO J.
, vol.13
, pp. 4412-4420
-
-
Noirot-Gros, M.F.1
Bidnenko, V.2
Ehrlich, S.D.3
-
21
-
-
0029908732
-
Change of a catalytic reaction carried out by a DNA replication protein
-
Noirot-Gros, M. F., and S. D. Ehrlich. 1996. Change of a catalytic reaction carried out by a DNA replication protein. Science 274:777-780.
-
(1996)
Science
, vol.274
, pp. 777-780
-
-
Noirot-Gros, M.F.1
Ehrlich, S.D.2
-
22
-
-
0035957520
-
The two active-site tyrosine residues of the A protein play non-equivalent roles during initiation of rolling circle replication of bacteriophage p2
-
Odegrip, R., and E. Haggard-Ljungquist. 2001. The two active-site tyrosine residues of the A protein play non-equivalent roles during initiation of rolling circle replication of bacteriophage p2. J. Mol. Biol. 308:147-163.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 147-163
-
-
Odegrip, R.1
Haggard-Ljungquist, E.2
-
23
-
-
77956754865
-
The Scottish Structural Proteomics Facility: Targets, methods and outputs
-
Oke, M., L. G. Carter, K. A. Johnson, H. Liu, S. A. McMahon, X. Yan, M. Kerou, N. D. Weikart, N. Kadi, M. A. Sheikh, S. Schmelz, M. Dorward, M. Zawadzki, C. Cozens, H. Falconer, H. Powers, I. M. Overton, C. A. van Niekerk, X. Peng, P. Patel, R. A. Garrett, D. Prangishvili, C. H. Botting, P. J. Coote, D. T. Dryden, G. J. Barton, U. Schwarz-Linek, G. L. Challis, G. L. Taylor, M. F. White, and J. H. Naismith. 2010. The Scottish Structural Proteomics Facility: targets, methods and outputs. J. Struct. Funct. Genomics 11:167-180.
-
(2010)
J. Struct. Funct. Genomics
, vol.11
, pp. 167-180
-
-
Oke, M.1
Carter, L.G.2
Johnson, K.A.3
Liu, H.4
McMahon, S.A.5
Yan, X.6
Kerou, M.7
Weikart, N.D.8
Kadi, N.9
Sheikh, M.A.10
Schmelz, S.11
Dorward, M.12
Zawadzki, M.13
Cozens, C.14
Falconer, H.15
Powers, H.16
Overton, I.M.17
Van Niekerk, C.A.18
Peng, X.19
Patel, P.20
Garrett, R.A.21
Prangishvili, D.22
Botting, C.H.23
Coote, P.J.24
Dryden, D.T.25
Barton, G.J.26
Schwarz-Linek, U.27
Challis, G.L.28
Taylor, G.L.29
White, M.F.30
Naismith, J.H.31
more..
-
24
-
-
0035694680
-
Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: Relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses
-
Peng, X., H. Blum, Q. She, S. Mallok, K. Brugger, R. A. Garrett, W. Zillig, and D. Prangishvili. 2001. Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses. Virology 291:226-234.
-
(2001)
Virology
, vol.291
, pp. 226-234
-
-
Peng, X.1
Blum, H.2
She, Q.3
Mallok, S.4
Brugger, K.5
Garrett, R.A.6
Zillig, W.7
Prangishvili, D.8
-
25
-
-
0021352583
-
Investigation of vaccinia virus DNA replication employing a conditional lethal mutant defective in DNA
-
Pogo, B. G., E. M. Berkowitz, and S. Dales. 1984. Investigation of vaccinia virus DNA replication employing a conditional lethal mutant defective in DNA. Virology 132:436-444.
-
(1984)
Virology
, vol.132
, pp. 436-444
-
-
Pogo, B.G.1
Berkowitz, E.M.2
Dales, S.3
-
26
-
-
0019419353
-
Initiation and termination of vaccinia virus DNA replication
-
Pogo, B. G., M. O'Shea, and P. Freimuth. 1981. Initiation and termination of vaccinia virus DNA replication. Virology 108:241-248.
-
(1981)
Virology
, vol.108
, pp. 241-248
-
-
Pogo, B.G.1
O'shea, M.2
Freimuth, P.3
-
27
-
-
0345583680
-
A novel virus family, the Rudiviridae: Structure, virushost interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2
-
Prangishvili, D., H. P. Arnold, D. Gotz, U. Ziese, I. Holz, J. K. Kristjansson, and W. Zillig. 1999. A novel virus family, the Rudiviridae: structure, virushost interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2. Genetics 152:1387-1396.
-
(1999)
Genetics
, vol.152
, pp. 1387-1396
-
-
Prangishvili, D.1
Arnold, H.P.2
Gotz, D.3
Ziese, U.4
Holz, I.5
Kristjansson, J.K.6
Zillig, W.7
-
28
-
-
33645087247
-
Evolutionary genomics of archaeal viruses: Unique viral genomes in the third domain of life
-
Prangishvili, D., R. A. Garrett, and E. V. Koonin. 2006. Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res. 117:52-67.
-
(2006)
Virus Res.
, vol.117
, pp. 52-67
-
-
Prangishvili, D.1
Garrett, R.A.2
Koonin, E.V.3
-
29
-
-
24944532259
-
Cytoplasmic organization of POXvirus DNA replication
-
Schramm, B., and J. K. Locker. 2005. Cytoplasmic organization of POXvirus DNA replication. Traffic 6:839-846.
-
(2005)
Traffic
, vol.6
, pp. 839-846
-
-
Schramm, B.1
Locker, J.K.2
-
30
-
-
33745288811
-
Demonstration of nicking/joining activity at the origin of DNA replication associated with the rep and rep' proteins of porcine circovirus type 1
-
Steinfeldt, T., T. Finsterbusch, and A. Mankertz. 2006. Demonstration of nicking/joining activity at the origin of DNA replication associated with the rep and rep' proteins of porcine circovirus type 1. J. Virol. 80:6225-6234.
-
(2006)
J. Virol.
, vol.80
, pp. 6225-6234
-
-
Steinfeldt, T.1
Finsterbusch, T.2
Mankertz, A.3
-
31
-
-
0032708385
-
A single rep protein initiates replication of multiple genome components of faba bean necrotic yellows virus, a single-stranded DNA virus of plants
-
Timchenko, T., F. de Kouchkovsky, L. Katul, C. David, H. J. Vetten, and B. Gronenborn. 1999. A single rep protein initiates replication of multiple genome components of faba bean necrotic yellows virus, a single-stranded DNA virus of plants. J. Virol. 73:10173-10182.
-
(1999)
J. Virol.
, vol.73
, pp. 10173-10182
-
-
Timchenko, T.1
De Kouchkovsky, F.2
Katul, L.3
David, C.4
Vetten, H.J.5
Gronenborn, B.6
-
32
-
-
33947536545
-
Sequence and recombination analyses of the geminivirus replication initiator protein
-
Vadivukarasi, T., K. R. Girish, and R. Usha. 2007. Sequence and recombination analyses of the geminivirus replication initiator protein. J. Biosci. 32:17-29.
-
(2007)
J. Biosci.
, vol.32
, pp. 17-29
-
-
Vadivukarasi, T.1
Girish, K.R.2
Usha, R.3
-
33
-
-
0023057871
-
Two juxtaposed tyrosyl-OH groups participate in phi X174 gene A protein catalysed cleavage and ligation of DNA
-
van Mansfeld, A. D., H. A. van Teeffelen, P. D. Baas, and H. S. Jansz. 1986. Two juxtaposed tyrosyl-OH groups participate in phi X174 gene A protein catalysed cleavage and ligation of DNA. Nucleic Acids Res. 14:4229-4238.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 4229-4238
-
-
Van Mansfeld, A.D.1
Van Teeffelen, H.A.2
Baas, P.D.3
Jansz, H.S.4
-
34
-
-
33847235317
-
Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2
-
Vega-Rocha, S., I. J. Byeon, B. Gronenborn, A. M. Gronenborn, and R. Campos-Olivas. 2007. Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2. J. Mol. Biol. 367:473-487.
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 473-487
-
-
Vega-Rocha, S.1
Byeon, I.J.2
Gronenborn, B.3
Gronenborn, A.M.4
Campos-Olivas, R.5
-
35
-
-
34249700716
-
Solution structure of the endonuclease domain from the master replication initiator protein of the nanovirus faba bean necrotic yellows virus and comparison with the corresponding geminivirus and circovirus structures
-
Vega-Rocha, S., B. Gronenborn, A. M. Gronenborn, and R. Campos-Olivas. 2007. Solution structure of the endonuclease domain from the master replication initiator protein of the nanovirus faba bean necrotic yellows virus and comparison with the corresponding geminivirus and circovirus structures. Biochemistry 46:6201-6212.
-
(2007)
Biochemistry
, vol.46
, pp. 6201-6212
-
-
Vega-Rocha, S.1
Gronenborn, B.2
Gronenborn, A.M.3
Campos-Olivas, R.4
-
36
-
-
18044373611
-
A novel rudivirus, ARV1, of the hyperthermo philic archaeal genus Acidianus
-
Vestergaard, G., M. Haring, X. Peng, R. Rachel, R. A. Garrett, and D.Prangishvili. 2005. A novel rudivirus, ARV1, of the hyperthermo philic archaeal genus Acidianus. Virology 336:83-92.
-
(2005)
Virology
, vol.336
, pp. 83-92
-
-
Vestergaard, G.1
Haring, M.2
Peng, X.3
Rachel, R.4
Garrett, R.A.5
Prangishvili, D.6
-
37
-
-
53849141479
-
Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system
-
Vestergaard, G., S. A. Shah, A. Bize, W. Reitberger, M. Reuter, H. Phan, A. Briegel, R. Rachel, R. A. Garrett, and D. Prangishvili. 2008. Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system. J. Bacteriol. 190:6837-6845.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6837-6845
-
-
Vestergaard, G.1
Shah, S.A.2
Bize, A.3
Reitberger, W.4
Reuter, M.5
Phan, H.6
Briegel, A.7
Rachel, R.8
Garrett, R.A.9
Prangishvili, D.10
|