메뉴 건너뛰기




Volumn 153, Issue 6, 2008, Pages 1085-1102

Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED DNA POLYMERASE;

EID: 44449111229     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-008-0095-9     Document Type: Article
Times cited : (37)

References (70)
  • 2
    • 15244344343 scopus 로고    scopus 로고
    • Molecular criteria for genus and species discrimination within the family Potyviridae
    • Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459-479
    • (2005) Arch Virol , vol.150 , pp. 459-479
    • Adams, M.J.1    Antoniw, J.F.2    Fauquet, C.M.3
  • 4
    • 0027946869 scopus 로고
    • Variation in biological properties of cauliflower mosaic virus clones
    • Al-Kaff N, Covez SN (1994) Variation in biological properties of cauliflower mosaic virus clones. J Gen Virol 75:3137-3145
    • (1994) J Gen Virol , vol.75 , pp. 3137-3145
    • Al-Kaff, N.1    Covez, S.N.2
  • 8
    • 0033970716 scopus 로고    scopus 로고
    • High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: A contribution to understanding potyvirus evolution
    • Bousalem M, Douzery EJ, Fargette D (2000) High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution. J Gen Virol 81:243-255
    • (2000) J Gen Virol , vol.81 , pp. 243-255
    • Bousalem, M.1    Douzery, E.J.2    Fargette, D.3
  • 9
    • 0141850272 scopus 로고    scopus 로고
    • Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: An evolutionary history of Yam mild mosaic virus (YMMV)
    • Bousalem M, Dallot S, Fuji S, Natsuaki KT (2003) Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: an evolutionary history of Yam mild mosaic virus (YMMV). Infect Genet Evol 3:189-206
    • (2003) Infect Genet Evol , vol.3 , pp. 189-206
    • Bousalem, M.1    Dallot, S.2    Fuji, S.3    Natsuaki, K.T.4
  • 10
    • 0028843178 scopus 로고
    • Detection of sugarcane bacilliform virus using the polymerase chain reaction
    • Braithwaite KS, Egeskov NM, Smith GR (1995) Detection of sugarcane bacilliform virus using the polymerase chain reaction. Plant Dis 79:792-796
    • (1995) Plant Dis , vol.79 , pp. 792-796
    • Braithwaite, K.S.1    Egeskov, N.M.2    Smith, G.R.3
  • 12
    • 0029029007 scopus 로고
    • Characterization of cassava vein mosaic virus: A distinct plant pararetrovirus
    • Calvert LA, Ospina MD, Shepherd RJ (1995) Characterization of cassava vein mosaic virus: a distinct plant pararetrovirus. J Gen Virol 76:1271-1276
    • (1995) J Gen Virol , vol.76 , pp. 1271-1276
    • Calvert, L.A.1    Ospina, M.D.2    Shepherd, R.J.3
  • 13
    • 0033824358 scopus 로고    scopus 로고
    • Plant DNA viruses and gene silencing
    • Covey SN, Al-Kaff NS (2000) Plant DNA viruses and gene silencing. Plant Mol Biol 43:307-322
    • (2000) Plant Mol Biol , vol.43 , pp. 307-322
    • Covey, S.N.1    Al-Kaff, N.S.2
  • 15
    • 0002687402 scopus 로고
    • Origin and evolutionary relationships of retroelements
    • Raven Press New York
    • Eickbuch TH (1994) Origin and evolutionary relationships of retroelements. In: Morses S (ed) The evolutionary biology of viruses. Raven Press, New York, pp 121-160
    • (1994) The Evolutionary Biology of Viruses , pp. 121-160
    • Eickbuch, T.H.1    Morses, S.2
  • 16
    • 0037905789 scopus 로고    scopus 로고
    • Geminivirus classification and nomenclature: Progress and problems
    • Fauquet CM, Stanly J (2003) Geminivirus classification and nomenclature: progress and problems. Ann appl Biol 142:165-189
    • (2003) Ann Appl Biol , vol.142 , pp. 165-189
    • Fauquet, C.M.1    Stanly, J.2
  • 18
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 19
    • 0036259513 scopus 로고    scopus 로고
    • Helper component transcomplementation in the vector transmission of plant viruses
    • Froissart R, Michalakis Y, Blanc S (2002) Helper component transcomplementation in the vector transmission of plant viruses. Phytopathology 92:576-579
    • (2002) Phytopathology , vol.92 , pp. 576-579
    • Froissart, R.1    Michalakis, Y.2    Blanc, S.3
  • 20
  • 23
    • 0034829454 scopus 로고    scopus 로고
    • Analysis of the distribution and structure of integrated Banana streak virus DNA in a range of Musa cultivars
    • Geering ADW, Olszewski NE, Dahal G, Thomas JE, Lockhart BEL (2001) Analysis of the distribution and structure of integrated Banana streak virus DNA in a range of Musa cultivars. Mol Plant Pathol 2:207-213
    • (2001) Mol Plant Pathol , vol.2 , pp. 207-213
    • Geering, A.D.W.1    Olszewski, N.E.2    Dahal, G.3    Thomas, J.E.4    Lockhart, B.E.L.5
  • 25
  • 26
    • 0032408259 scopus 로고    scopus 로고
    • Cloning and sequence analysis of banana streak virus DNA
    • Harper G, Hull R (1998) Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17:271-278
    • (1998) Virus Genes , vol.17 , pp. 271-278
    • Harper, G.1    Hull, R.2
  • 27
    • 0033558721 scopus 로고    scopus 로고
    • Integration of banana streak badnavirus into the Musa genome: Molecular and cytogenetic evidence
    • Harper G, Osuji J, Heslop-Harrison J, Hull R (1999) Integration of banana streak badnavirus into the Musa genome: molecular and cytogenetic evidence. Virology 255:207-213
    • (1999) Virology , vol.255 , pp. 207-213
    • Harper, G.1    Osuji, J.2    Heslop-Harrison, J.3    Hull, R.4
  • 29
    • 1242269891 scopus 로고    scopus 로고
    • Banana streak virus is very diverse in Uganda
    • Harper G, Hart D, Moult S, Hull R (2004) Banana streak virus is very diverse in Uganda. Virus Res 100:51-56
    • (2004) Virus Res , vol.100 , pp. 51-56
    • Harper, G.1    Hart, D.2    Moult, S.3    Hull, R.4
  • 31
    • 0000606107 scopus 로고
    • Transmission of two types of rice tungro associated viruses by insect vectors
    • Hibino H, Saleh N, Roechan M (1979) Transmission of two types of rice tungro associated viruses by insect vectors. Phytopathology 69:1266-1268
    • (1979) Phytopathology , vol.69 , pp. 1266-1268
    • Hibino, H.1    Saleh, N.2    Roechan, M.3
  • 32
    • 0000431696 scopus 로고
    • Infectivity neutralization of rice tungro-associated viruses acquired by vector leafhoppers
    • Hibino H, Cabauatan PQ (1987) Infectivity neutralization of rice tungro-associated viruses acquired by vector leafhoppers. Phytopathology 77:473-476
    • (1987) Phytopathology , vol.77 , pp. 473-476
    • Hibino, H.1    Cabauatan, P.Q.2
  • 33
    • 0029552874 scopus 로고    scopus 로고
    • Retroelements: Propagation and adaptation
    • Hull R, Covey SN (1996) Retroelements: propagation and adaptation. Virus Genes 11:105-118
    • (1996) Virus Genes , vol.11 , pp. 105-118
    • Hull, R.1    Covey, S.N.2
  • 34
  • 36
    • 0001569404 scopus 로고
    • Occurrence in sugarcane of a bacilliform virus related serologically to banana streak virus
    • Lockhart BEL, Autrey LJC (1988) Occurrence in sugarcane of a bacilliform virus related serologically to banana streak virus. Plant Dis 72:230-233
    • (1988) Plant Dis , vol.72 , pp. 230-233
    • Lockhart, B.E.L.1    Autrey, L.J.C.2
  • 38
    • 0001806251 scopus 로고
    • Serological and genomic heterogeneity of Banana streak badnavirus: Implications for virus detection in Musa germplasm
    • CIRAD-INIBAP Montpellier
    • Lockhart BEL, Olszewski N (1993) Serological and genomic heterogeneity of Banana streak badnavirus: implications for virus detection in Musa germplasm. In: Ganry J (ed) Breeding banana and plantain for resistance to disease and pests. CIRAD-INIBAP, Montpellier, pp 105-113
    • (1993) Breeding Banana and Plantain for Resistance to Disease and Pests , pp. 105-113
    • Lockhart, B.E.L.1    Olszewski, N.2    Ganry, J.3
  • 41
    • 0035094126 scopus 로고    scopus 로고
    • A new badnavirus in Ribes species, its detection by PCR, and its close association with gooseberry vein banding disease
    • Jones AT, McGavin WJ, Geering ADW, Lockhart BEL (2001) A new badnavirus in Ribes species, its detection by PCR, and its close association with gooseberry vein banding disease. Plant Dis 85:417-422
    • (2001) Plant Dis , vol.85 , pp. 417-422
    • Jones, A.T.1    McGavin, W.J.2    Geering, A.D.W.3    Lockhart, B.E.L.4
  • 42
    • 0036334845 scopus 로고    scopus 로고
    • Identification of Rubus yellow net virus as a distinct badnavirus and its detection by PCR in Rubus species and in aphids
    • Jones AT, McGavin WJ, Geering ADW, Lockhart BEL (2002) Identification of Rubus yellow net virus as a distinct badnavirus and its detection by PCR in Rubus species and in aphids. Ann Appl Biol 141:1-10
    • (2002) Ann Appl Biol , vol.141 , pp. 1-10
    • Jones, A.T.1    McGavin, W.J.2    Geering, A.D.W.3    Lockhart, B.E.L.4
  • 43
    • 42449129142 scopus 로고    scopus 로고
    • Yams (Dioscorea spp.) from the South Pacific Islands contain many novel badnaviruses: Implications for international movement of yam germplasm
    • (in press)
    • Kenyon L, Lebas BSM, Seal SE (2008) Yams (Dioscorea spp.) from the South Pacific Islands contain many novel badnaviruses: implications for international movement of yam germplasm. Arch Virol (in press)
    • (2008) Arch Virol
    • Kenyon, L.1    Lebas, B.S.M.2    Seal, S.E.3
  • 44
    • 0019296687 scopus 로고
    • A simple method for estimating rate of base substitutions through comparative studies of nucleotide sequence
    • Kimura M (1980) A simple method for estimating rate of base substitutions through comparative studies of nucleotide sequence. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 45
    • 0031837217 scopus 로고    scopus 로고
    • Cassava vein mosaic virus (CsVMV) the type species for a new genus of plant double stranded DNA viruses
    • Kochko de A, Verdaguer B, Taylor N, Carcamo R, Beachy RN, Fauquet CM (1998) Cassava vein mosaic virus (CsVMV) the type species for a new genus of plant double stranded DNA viruses. Arch Virol 143:945-962
    • (1998) Arch Virol , vol.143 , pp. 945-962
    • De Kochko, A.1    Verdaguer, B.2    Taylor, N.3    Carcamo, R.4    Beachy, R.N.5    Fauquet, C.M.6
  • 46
    • 0026333509 scopus 로고
    • Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity
    • Koonin E, Mushegian A, Ryabov EV, Dolja VV (1991) Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity. J Gen Virol 72:2895-2903
    • (1991) J Gen Virol , vol.72 , pp. 2895-2903
    • Koonin, E.1    Mushegian, A.2    Ryabov, E.V.3    Dolja, V.V.4
  • 47
    • 0011283776 scopus 로고
    • The molecular evolution of the retroid family
    • Gibbs A, Calisher CH, Garcia-Arenal F (eds) Cambridge University Press, Cambridge
    • McClure MA (1995) The molecular evolution of the retroid family. In: Gibbs A, Calisher CH, Garcia-Arenal F (eds) Molecular basis of virus evolution. Cambridge University Press, Cambridge, pp 404-415
    • (1995) Molecular Basis of Virus Evolution , pp. 404-415
    • McClure, M.A.1
  • 48
    • 0001862516 scopus 로고    scopus 로고
    • The retroid agents: Disease, function, and evolution
    • Domingo E, Webster R, Holland J (eds). Academic Press London
    • McClure MA (1999) The retroid agents: disease, function, and evolution. In: Domingo E, Webster R, Holland J (eds) Origin and evolution of viruses. Academic Press, London, pp 163-195
    • (1999) Origin and Evolution of Viruses , pp. 163-195
    • McClure, M.A.1
  • 49
    • 0034116209 scopus 로고    scopus 로고
    • The complexities of genome analysis, the Retroid agent perspective
    • McClure MA (2000) The complexities of genome analysis, the Retroid agent perspective. Bioinformatics 16:79-95
    • (2000) Bioinformatics , vol.16 , pp. 79-95
    • McClure, M.A.1
  • 50
    • 0036343346 scopus 로고    scopus 로고
    • Potential multiple endonuclease functions and a ribonuclease H encoded in retroposon genomes
    • McClure MA, Donaldson E, Corro S (2002) Potential multiple endonuclease functions and a ribonuclease H encoded in retroposon genomes. Virology 296:147-158
    • (2002) Virology , vol.296 , pp. 147-158
    • McClure, M.A.1    Donaldson, E.2    Corro, S.3
  • 52
    • 0033799581 scopus 로고    scopus 로고
    • Poised for contagion: Evolutionary origins of the infectious abilities of invertebrate retroviruses
    • Malik HS, Henikoff S, Eickbush TH (2000) Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Res 10:1307-1318
    • (2000) Genome Res , vol.10 , pp. 1307-1318
    • Malik, H.S.1    Henikoff, S.2    Eickbush, T.H.3
  • 53
    • 0034917751 scopus 로고    scopus 로고
    • Phylogenetic analysis of Rinonuclase H domains suggest a late, chimeric origin of LTR retrotransposable elements and retrovirus
    • Malik SH, Eickbuch TH (2001) Phylogenetic analysis of Rinonuclase H domains suggest a late, chimeric origin of LTR retrotransposable elements and retrovirus. Genome Res 11:1187-1197
    • (2001) Genome Res , vol.11 , pp. 1187-1197
    • Malik, S.H.1    Eickbuch, T.H.2
  • 54
    • 23844460512 scopus 로고    scopus 로고
    • Ribonuclase H evolution in retrotransposable elements
    • Malik SH (2005) Ribonuclase H evolution in retrotransposable elements. Cytogenet Genome Res 110:392-401
    • (2005) Cytogenet Genome Res , vol.110 , pp. 392-401
    • Malik, S.H.1
  • 55
    • 0033558763 scopus 로고    scopus 로고
    • Evidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences
    • Ndowora T, Dahal G, LaFleur D, Harper G, Hull R (1999) Evidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences. Virology 255:214-220
    • (1999) Virology , vol.255 , pp. 214-220
    • Ndowora, T.1    Dahal, G.2    Lafleur, D.3    Harper, G.4    Hull, R.5
  • 57
    • 0029959190 scopus 로고    scopus 로고
    • Helper-dependent vector transmission of plant viruses
    • Pirone T, Blanc S (1996) Helper-dependent vector transmission of plant viruses. Annu Rev Phytopathol 34:227-247
    • (1996) Annu Rev Phytopathol , vol.34 , pp. 227-247
    • Pirone, T.1    Blanc, S.2
  • 58
    • 0032617257 scopus 로고    scopus 로고
    • Virus taxonomy-1999. the universal system of virus taxonomy, updated to include the new proposals ratified by the International Committee on Taxonomy of Viruses during 1998
    • Pringle CR (1999) Virus taxonomy-1999. The universal system of virus taxonomy, updated to include the new proposals ratified by the International Committee on Taxonomy of Viruses during 1998. Arch Virol 144:421-429
    • (1999) Arch Virol , vol.144 , pp. 421-429
    • Pringle, C.R.1
  • 59
    • 0031572266 scopus 로고    scopus 로고
    • Petunia vein-clearing virus: A plant pararetrovirus with the core sequences for an integrase function
    • Richert-Pöggeler KR, Shepherd RJ (1997) Petunia vein-clearing virus: a plant pararetrovirus with the core sequences for an integrase function. Virology 236:137-146
    • (1997) Virology , vol.236 , pp. 137-146
    • Richert-Pöggeler, K.R.1    Shepherd, R.J.2
  • 60
    • 0027950659 scopus 로고
    • Pararetroviruses and retroviruses: A comparative review of viral structure and gene expression strategies
    • Rothnie HM, Chapdelaine Y, Hohn T (1994) Pararetroviruses and retroviruses: a comparative review of viral structure and gene expression strategies. Adv Virus Res 44:1-67
    • (1994) Adv Virus Res , vol.44 , pp. 1-67
    • Rothnie, H.M.1    Chapdelaine, Y.2    Hohn, T.3
  • 61
    • 33645798346 scopus 로고    scopus 로고
    • The ribosomal shunt translation strategy of cauliflower mosaic virus has evolved from ancient long terminal repeats
    • Shababi M, Bourque J, Palanichelvam K, Cole A, Xu D, Wan XF, Schoelz J (2006) The ribosomal shunt translation strategy of cauliflower mosaic virus has evolved from ancient long terminal repeats. J Virol 80:3811-3822
    • (2006) J Virol , vol.80 , pp. 3811-3822
    • Shababi, M.1    Bourque, J.2    Palanichelvam, K.3    Cole, A.4    Xu, D.5    Wan, X.F.6    Schoelz, J.7
  • 62
    • 0000931377 scopus 로고
    • Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group
    • Shukla DD, Ward CW (1988) Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J Gen Virol 69:2703-2710
    • (1988) J Gen Virol , vol.69 , pp. 2703-2710
    • Shukla, D.D.1    Ward, C.W.2
  • 64
    • 0042011260 scopus 로고    scopus 로고
    • Delimiting species: A Renaissance issue in systematic biology
    • Sites jr JW, Marshall JC (2003) Delimiting species: a Renaissance issue in systematic biology. Trends Ecol Evol 18:462-470
    • (2003) Trends Ecol Evol , vol.18 , pp. 462-470
    • Sites Jr., J.W.1    Marshall, J.C.2
  • 65
    • 0346752205 scopus 로고    scopus 로고
    • Characterization of Cestrum yellow leaf curling virus: A new member of the family Caulimoviridae
    • Stavolone L, Ragozzino A, Hohn T (2003) Characterization of Cestrum yellow leaf curling virus: a new member of the family Caulimoviridae. J Gen Virol 84:3459-3464
    • (2003) J Gen Virol , vol.84 , pp. 3459-3464
    • Stavolone, L.1    Ragozzino, A.2    Hohn, T.3
  • 68
    • 33845250191 scopus 로고    scopus 로고
    • Virus species and virus identification: Past and current controversies
    • doi: 10.1016/j.meegid.2006.04.002
    • Van Regenmortel MHV (2006) Virus species and virus identification: past and current controversies. Infect Genet Evol. doi: 10.1016/j.meegid.2006.04.002
    • (2006) Infect Genet Evol
    • Van Regenmortel, M.H.V.1
  • 69
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • Xiong Y, Eickbush TH (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 9:3353-3362
    • (1990) EMBO J , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2
  • 70
    • 0142091172 scopus 로고    scopus 로고
    • Sequence diversity of South Pacific isolates of Taro bacilliform virus and the development of a PCR-based diagnostic test
    • Yang IC, Hafner GJ, Revill PA, Dale JL, Harding RM (2003) Sequence diversity of South Pacific isolates of Taro bacilliform virus and the development of a PCR-based diagnostic test. Arch Virol 148:1957-1968
    • (2003) Arch Virol , vol.148 , pp. 1957-1968
    • Yang, I.C.1    Hafner, G.J.2    Revill, P.A.3    Dale, J.L.4    Harding, R.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.