-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F.et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
3
-
-
0035853296
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains
-
Anantharaman V.et al. Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. J. Mol. Biol. 307:2001;1271-1292.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1271-1292
-
-
Anantharaman, V.1
-
4
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the archaea
-
Aravind L., Koonin E.V. DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 27:1999;4658-4670.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
5
-
-
0033574503
-
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
-
Aravind L., Koonin E.V. Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J. Mol. Biol. 287:1999;1023-1040.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 1023-1040
-
-
Aravind, L.1
Koonin, E.V.2
-
6
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of repair systems
-
Aravind L.et al. Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res. 27:1999;1223-1242.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1223-1242
-
-
Aravind, L.1
-
7
-
-
0035895540
-
Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons
-
Aravind L.et al. Apoptotic molecular machinery: vastly increased complexity in vertebrates revealed by genome comparisons. Science. 291:2001;1279-1284.
-
(2001)
Science
, vol.291
, pp. 1279-1284
-
-
Aravind, L.1
-
8
-
-
0037169328
-
FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases
-
Aussel L.et al. FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases. Cell. 108:2002;195-205.
-
(2002)
Cell
, vol.108
, pp. 195-205
-
-
Aussel, L.1
-
9
-
-
0035202870
-
The Caenorhabditis elegans polarity gene ooc-5 encodes a Torsin-related protein of the AAA ATPase superfamily
-
Basham S.E., Rose L.S. The Caenorhabditis elegans polarity gene ooc-5 encodes a Torsin-related protein of the AAA ATPase superfamily. Development. 128:2001;4645-4656.
-
(2001)
Development
, vol.128
, pp. 4645-4656
-
-
Basham, S.E.1
Rose, L.S.2
-
10
-
-
0000254254
-
Identification of a 60S preribosomal particle that is closely linked to nuclear export
-
Bassler J.et al. Identification of a 60S preribosomal particle that is closely linked to nuclear export. Mol. Cell. 8:2001;517-529.
-
(2001)
Mol. Cell
, vol.8
, pp. 517-529
-
-
Bassler, J.1
-
11
-
-
0030867609
-
Sequence analysis of the AAA protein family
-
Beyer A. Sequence analysis of the AAA protein family. Protein Sci. 6:1997;2043-2058.
-
(1997)
Protein Sci.
, vol.6
, pp. 2043-2058
-
-
Beyer, A.1
-
12
-
-
0034677361
-
The structures of HsIU and the ATP-dependent protease HsIU-HsIV
-
Bochtler M.et al. The structures of HsIU and the ATP-dependent protease HsIU-HsIV. Nature. 403:2000;800-805.
-
(2000)
Nature
, vol.403
, pp. 800-805
-
-
Bochtler, M.1
-
13
-
-
0026687729
-
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins
-
Bork P.et al. An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins. Proc. Natl. Acad. Sci. USA. 89:1992;7290-7294.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 7290-7294
-
-
Bork, P.1
-
14
-
-
0031470387
-
Archaea and the prokaryote-to-eukaryote transition
-
Brown J.R., Doolittle W.F. Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev. 61:1997;456-502.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 456-502
-
-
Brown, J.R.1
Doolittle, W.F.2
-
15
-
-
0033080967
-
A six-stranded double-psi beta barrel is shared by several protein superfamilies
-
Castillo R.M.et al. A six-stranded double-psi beta barrel is shared by several protein superfamilies. Structure Fold Des. 7:1999;227-236.
-
(1999)
Structure Fold Des.
, vol.7
, pp. 227-236
-
-
Castillo, R.M.1
-
16
-
-
0033592545
-
The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element
-
Coles M.et al. The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element. Curr. Biol. 9:1999;1158-1168.
-
(1999)
Curr. Biol.
, vol.9
, pp. 1158-1168
-
-
Coles, M.1
-
17
-
-
0029328549
-
A 200-amino acid ATPase module in search of a basic function
-
Confalonieri F., Duguet M. A 200-amino acid ATPase module in search of a basic function. Bioessays. 17:1995;639-650.
-
(1995)
Bioessays
, vol.17
, pp. 639-650
-
-
Confalonieri, F.1
Duguet, M.2
-
18
-
-
0033808682
-
Human and mouse mitochondrial orthologs of bacterial ClpX
-
Corydon T.J.et al. Human and mouse mitochondrial orthologs of bacterial ClpX. Mamm. Genome. 11:2000;899-905.
-
(2000)
Mamm. Genome
, vol.11
, pp. 899-905
-
-
Corydon, T.J.1
-
19
-
-
0036897647
-
Eubacterial HslV and HslU subunits homologs in primordial eukaryotes
-
Couvreur B.et al. Eubacterial HslV and HslU subunits homologs in primordial eukaryotes. Mol. Biol. Evol. 19:2002;2110-2117.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2110-2117
-
-
Couvreur, B.1
-
20
-
-
0033214782
-
Bcs1p, an AAA-family member, is a chaperone for the assembly of the cytochrome bc(1) complex
-
Cruciat C.M.et al. Bcs1p, an AAA-family member, is a chaperone for the assembly of the cytochrome bc(1) complex. EMBO J. 18:1999;5226-5233.
-
(1999)
EMBO J.
, vol.18
, pp. 5226-5233
-
-
Cruciat, C.M.1
-
21
-
-
0037124375
-
The DnaC helicase loader is a dual ATP/ADP switch protein
-
Davey M.J.et al. The DnaC helicase loader is a dual ATP/ADP switch protein. EMBO J. 21:2002;3148-3159.
-
(2002)
EMBO J.
, vol.21
, pp. 3148-3159
-
-
Davey, M.J.1
-
22
-
-
0036844556
-
Motors and switches: AAA+ machines within the replisome
-
Davey M.J.et al. Motors and switches: AAA+ machines within the replisome. Nat. Rev. Mol. Cell. Biol. 3:2002;826-835.
-
(2002)
Nat. Rev. Mol. Cell. Biol.
, vol.3
, pp. 826-835
-
-
Davey, M.J.1
-
24
-
-
0036187422
-
FtsK: Maxwell's Demon?
-
Donachie W.D. FtsK: Maxwell's Demon? Mol. Cell. 9:2002;206-207.
-
(2002)
Mol. Cell
, vol.9
, pp. 206-207
-
-
Donachie, W.D.1
-
25
-
-
0037010120
-
AAA+ proteins and substrate recognition, it all depends on their partner in crime
-
Dougan D.A.et al. AAA+ proteins and substrate recognition, it all depends on their partner in crime. FEBS Lett. 529:2002;6-10.
-
(2002)
FEBS Lett.
, vol.529
, pp. 6-10
-
-
Dougan, D.A.1
-
26
-
-
0031587829
-
Archaea and the origin(s) of DNA replication proteins
-
Edgell D.R., Doolittle W.F. Archaea and the origin(s) of DNA replication proteins. Cell. 89:1997;995-998.
-
(1997)
Cell
, vol.89
, pp. 995-998
-
-
Edgell, D.R.1
Doolittle, W.F.2
-
27
-
-
0029039925
-
Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases
-
Egelman E.H.et al. Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases. Proc. Natl. Acad. Sci. USA. 92:1995;3869-3873.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3869-3873
-
-
Egelman, E.H.1
-
28
-
-
0032786233
-
A phylogenomic study of DNA repair genes, proteins, and processes
-
Eisen J.A., Hanawalt P.C. A phylogenomic study of DNA repair genes, proteins, and processes. Mutat. Res. 435:1999;171-213.
-
(1999)
Mutat. Res.
, vol.435
, pp. 171-213
-
-
Eisen, J.A.1
Hanawalt, P.C.2
-
29
-
-
0037119995
-
The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation
-
Erzberger J.P.et al. The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation. EMBO J. 21:2002;4763-4773.
-
(2002)
EMBO J.
, vol.21
, pp. 4763-4773
-
-
Erzberger, J.P.1
-
30
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Felsenstein J. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 266:1996;418-427.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
31
-
-
0037336323
-
The structure and function of MCM from archaeal M. Thermoautotrophicum
-
Fletcher R.J.et al. The structure and function of MCM from archaeal M. Thermoautotrophicum. Nat. Struct. Biol. 10:2003;160-167.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 160-167
-
-
Fletcher, R.J.1
-
32
-
-
0035800571
-
Interplay between an AAA module and an integrin I domain may regulate the function of magnesium chelatase
-
Fodje M.N.et al. Interplay between an AAA module and an integrin I domain may regulate the function of magnesium chelatase. J. Mol. Biol. 311:2001;111-122.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 111-122
-
-
Fodje, M.N.1
-
33
-
-
0036790008
-
The origin of DNA genomes and DNA replication proteins
-
Forterre P. The origin of DNA genomes and DNA replication proteins. Curr. Opin. Microbiol. 5:2002;525-532.
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 525-532
-
-
Forterre, P.1
-
34
-
-
0035007681
-
An AAA family tree
-
Frohlich K.U. An AAA family tree. J. Cell. Sci. 114:2001;1601-1602.
-
(2001)
J. Cell. Sci.
, vol.114
, pp. 1601-1602
-
-
Frohlich, K.U.1
-
35
-
-
0031015304
-
Bacterial protease Lon is a site-specific DNA-binding protein
-
Fu G.K.et al. Bacterial protease Lon is a site-specific DNA-binding protein. J. Biol. Chem. 272:1997;534-538.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 534-538
-
-
Fu, G.K.1
-
36
-
-
0036283446
-
A membrane-bound archaeal Lon protease displays ATP-independent proteolytic activity towards unfolded proteins and ATP-dependent activity for folded proteins
-
Fukui T.et al. A membrane-bound archaeal Lon protease displays ATP-independent proteolytic activity towards unfolded proteins and ATP-dependent activity for folded proteins. J. Bacteriol. 184:2002;3689-3698.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3689-3698
-
-
Fukui, T.1
-
37
-
-
0005073263
-
Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein
-
Garbarino J.E., Gibbons I.R. Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein. BMC Genom. 3:2002;18.
-
(2002)
BMC Genom.
, vol.3
, pp. 18
-
-
Garbarino, J.E.1
Gibbons, I.R.2
-
38
-
-
0037271207
-
Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: Combined structural, functional and phylogenetic perspectives
-
Giraldo R. Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives. FEMS Microbiol. Rev. 26:2003;533-554.
-
(2003)
FEMS Microbiol. Rev.
, vol.26
, pp. 533-554
-
-
Giraldo, R.1
-
39
-
-
0035252083
-
The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase
-
Gomis-Ruth F.X.et al. The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature. 409:2001;637-641.
-
(2001)
Nature
, vol.409
, pp. 637-641
-
-
Gomis-Ruth, F.X.1
-
40
-
-
0024462161
-
Viral proteins containing the purine NTP-binding sequence pattern
-
Gorbalenya A.E., Koonin E.V. Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res. 17:1989;8413-8440.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 8413-8440
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
41
-
-
0025261685
-
A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses
-
Gorbalenya A.E.et al. A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Lett. 262:1990;145-148.
-
(1990)
FEBS Lett.
, vol.262
, pp. 145-148
-
-
Gorbalenya, A.E.1
-
42
-
-
0030666224
-
Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III
-
Guenther B.et al. Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III. Cell. 91:1997;335-345.
-
(1997)
Cell.
, vol.91
, pp. 335-345
-
-
Guenther, B.1
-
43
-
-
0037195418
-
Crystal structure of ClpA, an Hsp100 chaperone and regulator of ClpAP protease
-
Guo F.et al. Crystal structure of ClpA, an Hsp100 chaperone and regulator of ClpAP protease. J. Biol. Chem. 277:2002;46743-46752.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 46743-46752
-
-
Guo, F.1
-
44
-
-
0037108759
-
Three semidominant barley mutants with single amino acid substitutions in the smallest magnesium chelatase subunit form defective AAA+ hexamers
-
Hansson A.et al. Three semidominant barley mutants with single amino acid substitutions in the smallest magnesium chelatase subunit form defective AAA+ hexamers. Proc. Natl. Acad. Sci. USA. 99:2002;13944-13949.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 13944-13949
-
-
Hansson, A.1
-
45
-
-
0031812822
-
The nirQ gene, which is required for denitrification of Pseudomonas aeruginosa, can activate the RubisCO from Pseudomonas hydrogenothermophila
-
Hayashi N.R.et al. The nirQ gene, which is required for denitrification of Pseudomonas aeruginosa, can activate the RubisCO from Pseudomonas hydrogenothermophila. Biochim. Biophys. Acta. 1381:1998;347-350.
-
(1998)
Biochim. Biophys. Acta
, vol.1381
, pp. 347-350
-
-
Hayashi, N.R.1
-
46
-
-
0033547451
-
The cbbQ genes, located downstream of the form I and form II RubisCO genes, affect the activity of both RubisCOs
-
Hayashi N.R.et al. The cbbQ genes, located downstream of the form I and form II RubisCO genes, affect the activity of both RubisCOs. Biochem. Biophys. Res. Commun. 265:1999;177-183.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.265
, pp. 177-183
-
-
Hayashi, N.R.1
-
47
-
-
0032544708
-
ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme
-
Hingorani M.M., O'Donnell M. ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme. J. Biol. Chem. 273:1998;24550-24563.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 24550-24563
-
-
Hingorani, M.M.1
O'Donnell, M.2
-
48
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
Holm L., Sander C. Dali: a network tool for protein structure comparison. Trends Biochem. Sci. 20:1995;478-480.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
49
-
-
0025811074
-
A DNA region of 9 kbp contains all genes necessary for gas vesicle synthesis in halophilic archaebacteria
-
Horne M.et al. A DNA region of 9 kbp contains all genes necessary for gas vesicle synthesis in halophilic archaebacteria. Mol. Microbiol. 5:1991;1159-1174.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 1159-1174
-
-
Horne, M.1
-
50
-
-
0035715972
-
Clp ATPases and their role in protein unfolding and degradation
-
Hoskins J.R.et al. Clp ATPases and their role in protein unfolding and degradation. Adv. Protein Chem. 59:2001;413-429.
-
(2001)
Adv. Protein Chem.
, vol.59
, pp. 413-429
-
-
Hoskins, J.R.1
-
51
-
-
0033940941
-
Gene and context: Integrative approaches to genome analysis
-
Huynen M.J., Snel B. Gene and context: integrative approaches to genome analysis. Adv. Prot. Chem. 54:2000;345-379.
-
(2000)
Adv. Prot. Chem.
, vol.54
, pp. 345-379
-
-
Huynen, M.J.1
Snel, B.2
-
52
-
-
0037068758
-
Isolation of HELAD1, a novel human helicase gene up-regulated in colorectal carcinomas
-
Ishiguro H.et al. Isolation of HELAD1, a novel human helicase gene up-regulated in colorectal carcinomas. Oncogene. 21:2002;6387-6394.
-
(2002)
Oncogene
, vol.21
, pp. 6387-6394
-
-
Ishiguro, H.1
-
53
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
Iyer L.M.et al. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 75:2001;11720-11734.
-
(2001)
J. Virol.
, vol.75
, pp. 11720-11734
-
-
Iyer, L.M.1
-
54
-
-
0035827598
-
A novel protein interacts with the Werner's syndrome gene product physically and functionally
-
Kawabe Y.et al. A novel protein interacts with the Werner's syndrome gene product physically and functionally. J. Biol. Chem. 276:2001;20364-20369.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 20364-20369
-
-
Kawabe, Y.1
-
55
-
-
0037334907
-
Structural lessons in DNA replication from the third domain of life
-
Kelman Z., Hurwitz J. Structural lessons in DNA replication from the third domain of life. Nat. Struct. Biol. 10:2003;148-150.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 148-150
-
-
Kelman, Z.1
Hurwitz, J.2
-
56
-
-
0027267908
-
A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication
-
Koonin E.V. A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res. 21:1993;2541-2547.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2541-2547
-
-
Koonin, E.V.1
-
57
-
-
0031046171
-
Evidence for a family of archaeal ATPases
-
Koonin E.V. Evidence for a family of archaeal ATPases. Science. 275:1997;1489-1490.
-
(1997)
Science
, vol.275
, pp. 1489-1490
-
-
Koonin, E.V.1
-
58
-
-
0001938035
-
Comparative genomic view of microbial stress response
-
G. Storz, & R. Hengge-Aronis. Washington, DC: ASM Press
-
Koonin E.V.et al. Comparative genomic view of microbial stress response. Storz G., Hengge-Aronis R. Bacterial Stress Response. 2000;417-444 ASM Press, Washington, DC.
-
(2000)
Bacterial Stress Response
, pp. 417-444
-
-
Koonin, E.V.1
-
59
-
-
0033941641
-
Protein fold recognition using sequence profiles and its application in structural genomics
-
Koonin E.V.et al. Protein fold recognition using sequence profiles and its application in structural genomics. Adv. Protein Chem. 54:2000;245-275.
-
(2000)
Adv. Protein Chem.
, vol.54
, pp. 245-275
-
-
Koonin, E.V.1
-
60
-
-
0036054289
-
The crystal structure of the AAA domain of the ATP-dependent protease FtsH of Escherichia coli at 1.5 Å resolution
-
Krzywda S.et al. The crystal structure of the AAA domain of the ATP-dependent protease FtsH of Escherichia coli at 1.5. Å resolution Structure (Camb). 10:2002;1073-1083.
-
(2002)
Structure (Camb)
, vol.10
, pp. 1073-1083
-
-
Krzywda, S.1
-
61
-
-
0028294049
-
MEGA: Molecular evolutionary genetics analysis software for microcomputers
-
Kumar S.et al. MEGA: molecular evolutionary genetics analysis software for microcomputers. Comput. Appl. Biosci. 10:1994;189-191.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 189-191
-
-
Kumar, S.1
-
62
-
-
0033033988
-
A notable example of an evolutionary conserved gene: Studies on a putative DNA helicase TIP49
-
Kurokawa Y.et al. A notable example of an evolutionary conserved gene: studies on a putative DNA helicase TIP49. DNA Seq. 10:1999;37-42.
-
(1999)
DNA Seq.
, vol.10
, pp. 37-42
-
-
Kurokawa, Y.1
-
63
-
-
0032828663
-
Universal protein families and the functional content of the last universal common ancestor
-
Kyrpides N.et al. Universal protein families and the functional content of the last universal common ancestor. J. Mol. Evol. 49:1999;413-423.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 413-423
-
-
Kyrpides, N.1
-
64
-
-
0034063607
-
ATPase switches controlling DNA replication initiation
-
Lee D.G., Bell S.P. ATPase switches controlling DNA replication initiation. Curr. Opin. Cell. Biol. 12:2000;280-285.
-
(2000)
Curr. Opin. Cell. Biol.
, vol.12
, pp. 280-285
-
-
Lee, D.G.1
Bell, S.P.2
-
65
-
-
0026686760
-
AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP family of ATPases
-
Lee Y.J., Wickner R.B. AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP family of ATPases. Yeast. 8:1992;787-790.
-
(1992)
Yeast
, vol.8
, pp. 787-790
-
-
Lee, Y.J.1
Wickner, R.B.2
-
66
-
-
0033975419
-
The bacterial replicative helicase DnaB evolved from a RecA duplication
-
Leipe D.D.et al. The bacterial replicative helicase DnaB evolved from a RecA duplication. Genome Res. 10:2000;5-16.
-
(2000)
Genome Res.
, vol.10
, pp. 5-16
-
-
Leipe, D.D.1
-
67
-
-
0033199713
-
Did DNA replication evolve twice independently?
-
Leipe D.D.et al. Did DNA replication evolve twice independently? Nucleic Acids Res. 27:1999;3389-3401.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3389-3401
-
-
Leipe, D.D.1
-
68
-
-
0036295212
-
Classification and evolution of P-loop GTPases and related ATPases
-
Leipe D.D.et al. Classification and evolution of P-loop GTPases and related ATPases. J. Mol. Biol. 317:2002;41-72.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 41-72
-
-
Leipe, D.D.1
-
69
-
-
0142011067
-
Evolution and classification of P-loop kinases and related proteins
-
Leipe D.D.et al. Evolution and classification of P-loop kinases and related proteins. J. Mol. Biol. 333:2003;781-815.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 781-815
-
-
Leipe, D.D.1
-
70
-
-
0032555745
-
Crystal structure of the hexamerization domain of N-ethylmaleimide- sensitive fusion protein
-
Lenzen C.U.et al. Crystal structure of the hexamerization domain of N-ethylmaleimide-sensitive fusion protein. Cell. 94:1998;525-536.
-
(1998)
Cell
, vol.94
, pp. 525-536
-
-
Lenzen, C.U.1
-
71
-
-
0038700763
-
Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen
-
Li D.et al. Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. Nature. 423:2003;512-518.
-
(2003)
Nature
, vol.423
, pp. 512-518
-
-
Li, D.1
-
72
-
-
0033634866
-
Structure and function of Cdc6/Cdc18: Implications for origin recognition and checkpoint control
-
Liu J.et al. Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Mol. Cell. 6:2000;637-648.
-
(2000)
Mol. Cell
, vol.6
, pp. 637-648
-
-
Liu, J.1
-
74
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte E.M.et al. Detecting protein function and protein-protein interactions from genome sequences. Science. 285:1999;751-753.
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
-
75
-
-
0025996094
-
Evidence for an ancestral core structure in nucleotide-binding proteins with the type a motif
-
Milner-White E.J.et al. Evidence for an ancestral core structure in nucleotide-binding proteins with the type A motif. J. Mol. Biol. 221:1991;751-754.
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 751-754
-
-
Milner-White, E.J.1
-
76
-
-
0035089503
-
Model for the motor component of dynein heavy chain based on homology to the AAA family of oligomeric ATPases
-
Mocz G., Gibbons I.R. Model for the motor component of dynein heavy chain based on homology to the AAA family of oligomeric ATPases. Structure (Camb). 9:2001;93-103.
-
(2001)
Structure (Camb)
, vol.9
, pp. 93-103
-
-
Mocz, G.1
Gibbons, I.R.2
-
77
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin A.G.et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
-
78
-
-
0034903652
-
Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway
-
Naiki T.et al. Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway. Mol. Cell. Biol. 21:2001;5838-5845.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 5838-5845
-
-
Naiki, T.1
-
79
-
-
0033081408
-
The hexamerization domain of N-ethylmaleimide-sensitive factor: Structural clues to chaperone function
-
Neuwald A.F. The hexamerization domain of N-ethylmaleimide-sensitive factor: structural clues to chaperone function. Struct. Fold Des. 7:1999;R19-R23.
-
(1999)
Struct. Fold Des.
, vol.7
, pp. 19-R23
-
-
Neuwald, A.F.1
-
80
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald A.F.et al. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res. 9:1999;27-43.
-
(1999)
Genome Res.
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
-
81
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C.et al. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302:2000;205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
-
82
-
-
0034885052
-
AAA+ superfamily ATPases: Common structure-diverse function
-
Ogura T., Wilkinson A.J. AAA+ superfamily ATPases: common structure-diverse function. Genes Cells. 6:2001;575-597.
-
(2001)
Genes Cells
, vol.6
, pp. 575-597
-
-
Ogura, T.1
Wilkinson, A.J.2
-
83
-
-
0035876202
-
The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotides
-
Panne D.et al. The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotides. EMBO J. 20:2001;3210-3217.
-
(2001)
EMBO J.
, vol.20
, pp. 3210-3217
-
-
Panne, D.1
-
84
-
-
0242515820
-
Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases
-
Pei J., Grishin N.V. Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases. Protein Sci. 12:2003;1131-1135.
-
(2003)
Protein Sci.
, vol.12
, pp. 1131-1135
-
-
Pei, J.1
Grishin, N.V.2
-
85
-
-
0030053370
-
ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling
-
Peitsch M.C. ProMod and Swiss-Model: internet-based tools for automated comparative protein modelling. Biochem. Soc. Trans. 24:1996;274-279.
-
(1996)
Biochem. Soc. Trans.
, vol.24
, pp. 274-279
-
-
Peitsch, M.C.1
-
86
-
-
0033600727
-
The GTP-binding domain of McrB: More than just a variation on a common theme?
-
Pieper U.et al. The GTP-binding domain of McrB: more than just a variation on a common theme? J. Mol. Biol. 292:1999;547-556.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 547-556
-
-
Pieper, U.1
-
87
-
-
0035839032
-
Structure and mechanism of the RuvB Holliday junction branch migration motor
-
Putnam C.D.et al. Structure and mechanism of the RuvB Holliday junction branch migration motor. J. Mol. Biol. 311:2001;297-310.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 297-310
-
-
Putnam, C.D.1
-
88
-
-
0032457658
-
The bacterial enhancer-binding protein NtrC as a molecular machine
-
Rombel I.et al. The bacterial enhancer-binding protein NtrC as a molecular machine. Cold Spring Harb Symp. Quant. Biol. 63:1998;157-166.
-
(1998)
Cold Spring Harb Symp. Quant. Biol.
, vol.63
, pp. 157-166
-
-
Rombel, I.1
-
89
-
-
0028300741
-
Combining evolutionary information and neural networks to predict protein secondary structure
-
Rost B., Sander C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins. 19:1994;55-72.
-
(1994)
Proteins
, vol.19
, pp. 55-72
-
-
Rost, B.1
Sander, C.2
-
90
-
-
18744395748
-
Reptin and pontin antagonistically regulate heart growth in zebrafish embryos
-
Rottbauer W.et al. Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell. 111:2002;661-672.
-
(2002)
Cell
, vol.111
, pp. 661-672
-
-
Rottbauer, W.1
-
91
-
-
0025048136
-
The P-loop - A common motif in ATP- and GTP-binding proteins
-
Saraste M.et al. The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem. Sci. 15:1990;430-434.
-
(1990)
Trends Biochem. Sci.
, vol.15
, pp. 430-434
-
-
Saraste, M.1
-
92
-
-
0029060166
-
Proteasome from Thermoplasma acidophilum: A threonine protease
-
Seemuller E.et al. Proteasome from Thermoplasma acidophilum: a threonine protease. Science. 268:1995;579-582.
-
(1995)
Science
, vol.268
, pp. 579-582
-
-
Seemuller, E.1
-
93
-
-
0026584599
-
Structure of the recA protein-ADP complex
-
Story R.M., Steitz T.A. Structure of the recA protein-ADP complex. Nature. 355:1992;374-376.
-
(1992)
Nature
, vol.355
, pp. 374-376
-
-
Story, R.M.1
Steitz, T.A.2
-
94
-
-
0036637641
-
Unc-53 controls longitudinal migration in C. elegans
-
Stringham E.et al. unc-53 controls longitudinal migration in C. elegans. Development. 129:2002;3367-3379.
-
(2002)
Development
, vol.129
, pp. 3367-3379
-
-
Stringham, E.1
-
95
-
-
0030730258
-
The evolution of the conserved ATPase domain (CAD): Reconstructing the history of an ancient protein module
-
Swaffield J.C., Purugganan M.D. The evolution of the conserved ATPase domain (CAD): reconstructing the history of an ancient protein module. J. Mol. Evol. 45:1997;549-563.
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 549-563
-
-
Swaffield, J.C.1
Purugganan, M.D.2
-
96
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov R.L.et al. The COG database: an updated version includes eukaryotes. BMC Bioinform. 4:2003;41.
-
(2003)
BMC Bioinform.
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
97
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D.et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
-
98
-
-
0029060112
-
Escherichia coli FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma32
-
Tomoyasu T.et al. Escherichia coli FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma32. EMBO J. 14:1995;2551-2560.
-
(1995)
EMBO J.
, vol.14
, pp. 2551-2560
-
-
Tomoyasu, T.1
-
99
-
-
0036103598
-
The structure of the mammalian 20S proteasome at 2.75 a resolution
-
Unno M.et al. The structure of the mammalian 20S proteasome at 2.75 A resolution. Structure (Camb). 10:2002;609-618.
-
(2002)
Structure (Camb)
, vol.10
, pp. 609-618
-
-
Unno, M.1
-
100
-
-
0037459061
-
The molecular motor toolbox for intracellular transport
-
Vale R.D. The molecular motor toolbox for intracellular transport. Cell. 112:2003;467-480.
-
(2003)
Cell
, vol.112
, pp. 467-480
-
-
Vale, R.D.1
-
101
-
-
0025885443
-
Isolation and characterization of the moxJ, moxG, moxI, and moxR genes of Paracoccus denitrificans: Inactivation of moxJ, moxG, and moxR and the resultant effect on methylotrophic growth
-
Van Spanning R.J.et al. Isolation and characterization of the moxJ, moxG, moxI, and moxR genes of Paracoccus denitrificans: inactivation of moxJ, moxG, and moxR and the resultant effect on methylotrophic growth. J. Bacteriol. 173:1991;6948-6961.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 6948-6961
-
-
Van Spanning, R.J.1
-
102
-
-
0036006291
-
SV40 large T antigen hexamer structure: Domain organization and DNA-induced conformational changes
-
VanLoock M.S.et al. SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes. Curr. Biol. 12:2002;472-476.
-
(2002)
Curr. Biol.
, vol.12
, pp. 472-476
-
-
Vanloock, M.S.1
-
103
-
-
0037131243
-
Role of Rpn11 metalloprotease in deubiquitination and degradation by the26S proteasome
-
Verma R.et al. Role of Rpn11 metalloprotease in deubiquitination and degradation by the26S proteasome. Science. 298:2002;611-615.
-
(2002)
Science
, vol.298
, pp. 611-615
-
-
Verma, R.1
-
104
-
-
0033511228
-
Nucleoside triphosphate-binding proteins: Different scaffolds to achieve phosphoryl transfer
-
Vetter I.R., Wittinghofer A. Nucleoside triphosphate-binding proteins: different scaffolds to achieve phosphoryl transfer. Q. Rev. Biophys. 32:1999;1-56.
-
(1999)
Q. Rev. Biophys.
, vol.32
, pp. 1-56
-
-
Vetter, I.R.1
Wittinghofer, A.2
-
106
-
-
0001607723
-
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker J.E.et al. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1:1982;945-951.
-
(1982)
EMBO J.
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
-
107
-
-
0033859666
-
An ATPase/helicase complex is an essential cofactor for oncogenic transformation by c-Myc
-
Wood M.A.et al. An ATPase/helicase complex is an essential cofactor for oncogenic transformation by c-Myc. Mol. Cell. 5:2000;321-330.
-
(2000)
Mol. Cell.
, vol.5
, pp. 321-330
-
-
Wood, M.A.1
-
108
-
-
18644379392
-
Crystal structure of the RuvA-RuvB complex: A structural basis for the Holliday junction migrating motor machinery
-
Yamada K.et al. Crystal structure of the RuvA-RuvB complex: a structural basis for the Holliday junction migrating motor machinery. Mol. Cell. 10:2002;671-681.
-
(2002)
Mol. Cell.
, vol.10
, pp. 671-681
-
-
Yamada, K.1
-
109
-
-
0036668640
-
The Methanobacterium thermoautotrophicum MCM protein can form heptameric rings
-
Yu X.et al. The Methanobacterium thermoautotrophicum MCM protein can form heptameric rings. EMBO Rep. 3:2002;792-797.
-
(2002)
EMBO Rep.
, vol.3
, pp. 792-797
-
-
Yu, X.1
-
110
-
-
0036039734
-
Mechanochemical ATPases and transcriptional activation
-
Zhang X.et al. Mechanochemical ATPases and transcriptional activation. Mol. Microbiol. 45:2002;895-903.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 895-903
-
-
Zhang, X.1
|