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Volumn 26, Issue 12, 2009, Pages 2795-2808

A broadscale phylogenetic analysis of group ii intron rnas and intron-encoded reverse transcriptases

Author keywords

Base composition heterogeneity; Group II intron; Phylogeny; Retroelement; Reverse transcriptase; Taxon sampling

Indexed keywords

RNA; RNA DIRECTED DNA POLYMERASE;

EID: 70450225451     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp193     Document Type: Article
Times cited : (30)

References (75)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 21: 2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro M, Zoller S, Lutzoni F. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol. 20: 255-266.
    • (2003) Mol Biol Evol , vol.20 , pp. 255-266
    • Alfaro, M.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • DOI 10.1093/bioinformatics/btg427
    • Altekar G, Dwarkadas S, Huelsenbeck J, Ronquist F. 2004. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics. 20: 407-415. (Pubitemid 38262773)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 4
    • 0037312932 scopus 로고    scopus 로고
    • Retroelements containing introns in diverse invertebrate taxa
    • Arkhipova I, Pyatkov K, Meselson M, Evgen'ev M. 2003. Retroelements containing introns in diverse invertebrate taxa. Nat Genet. 33:123-124.
    • (2003) Nat Genet , vol.33 , pp. 123-124
    • Arkhipova, I.1    Pyatkov, K.2    Meselson, M.3    Evgen'Ev, M.4
  • 5
    • 21344441799 scopus 로고    scopus 로고
    • Intron splicing in plant organelles
    • Daniell H, Chase C, editors Dordrecht (The Netherlands): Kluwer Academic Publishers
    • Barkan A. 2004. Intron splicing in plant organelles. In: Daniell H, Chase C, editors. Molecular biology and biotechnology of plant organelles. Dordrecht (The Netherlands): Kluwer Academic Publishers. p. 281-308.
    • (2004) Molecular Biology and Biotechnology of Plant Organelles , pp. 281-308
    • Barkan, A.1
  • 6
    • 0034104829 scopus 로고    scopus 로고
    • The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron
    • Besendahl A, Qiu YL, Lee J, Palmer JD, Bhattacharya D. 2000. The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron. Curr Genet. 37:12-23.
    • (2000) Curr Genet , vol.37 , pp. 12-23
    • Besendahl, A.1    Qiu, Y.L.2    Lee, J.3    Palmer, J.D.4    Bhattacharya, D.5
  • 7
    • 0028061443 scopus 로고
    • Group i introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnema-tales (Charophyceae)
    • Bhattacharya D, Surek B, Rusing M, Damberger S, Melkonian M. 1994. Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnema-tales (Charophyceae). Proc Natl Acad Sci USA. 91: 9916-9920.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9916-9920
    • Bhattacharya, D.1    Surek, B.2    Rusing, M.3    Damberger, S.4    Melkonian, M.5
  • 8
    • 0037594762 scopus 로고    scopus 로고
    • Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms
    • Borsch T, Hilu K, Quandt D, Wilde V, Neinhuis C, Barthlott W. 2003. Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. J Evol Biol. 16:558-576.
    • (2003) J Evol Biol , vol.16 , pp. 558-576
    • Borsch, T.1    Hilu, K.2    Quandt, D.3    Wilde, V.4    Neinhuis, C.5    Barthlott, W.6
  • 9
    • 0035527383 scopus 로고    scopus 로고
    • Exploring among-site rate variation models in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths, and bootstrap support
    • Buckley T, Simon C, Chambers G. 2001. Exploring among-site rate variation models in a maximum likelihood framework using empirical data: effects of model assumptions on estimates of topology, branch lengths, and bootstrap support. Syst Biol. 50:67-86.
    • (2001) Syst Biol , vol.50 , pp. 67-86
    • Buckley, T.1    Simon, C.2    Chambers, G.3
  • 10
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • Gesteland RF, Cech TR, Atkins JF, editors Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press
    • Burge CB, Tuschl T, Sharp PA. 1999. Splicing of precursors to mRNAs by the spliceosomes. In: Gesteland RF, Cech TR, Atkins JF, editors. The RNA world. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press. p. 525-560.
    • (1999) The RNA World , pp. 525-560
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 11
    • 8644255915 scopus 로고    scopus 로고
    • Homing endonuclease genes: The rise and fall and rise again of a selfish element
    • Burt A, Koufopanou V. 2004. Homing endonuclease genes: the rise and fall and rise again of a selfish element. Curr Opin Genet Dev. 14:609-615.
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 609-615
    • Burt, A.1    Koufopanou, V.2
  • 12
    • 0033860303 scopus 로고    scopus 로고
    • Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences
    • Chang B, Campbell D. 2000. Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences. Mol Biol Evol. 17: 1220-1231.
    • (2000) Mol Biol Evol , vol.17 , pp. 1220-1231
    • Chang, B.1    Campbell, D.2
  • 13
    • 16344385067 scopus 로고    scopus 로고
    • Complex spliceosomal organization ancestral to extant eukaryotes
    • Collins L, Penny D. 2005. Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol. 22: 1053-1066.
    • (2005) Mol Biol Evol , vol.22 , pp. 1053-1066
    • Collins, L.1    Penny, D.2
  • 14
    • 0034983477 scopus 로고    scopus 로고
    • Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference
    • Conant G, Lewis P. 2001. Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference. Mol Biol Evol. 18:1024-1033.
    • (2001) Mol Biol Evol , vol.18 , pp. 1024-1033
    • Conant, G.1    Lewis, P.2
  • 15
    • 0037278926 scopus 로고    scopus 로고
    • ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs
    • Dai L, Zimmerly S. 2003. ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs. RNA. 9:14-19.
    • (2003) RNA , vol.9 , pp. 14-19
    • Dai, L.1    Zimmerly, S.2
  • 16
    • 0036017382 scopus 로고    scopus 로고
    • RtREV: An amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny
    • Dimmic M, Rest J, Mindell D, Goldstein R. 2002. rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. J Mol Evol. 55:65-73.
    • (2002) J Mol Evol , vol.55 , pp. 65-73
    • Dimmic, M.1    Rest, J.2    Mindell, D.3    Goldstein, R.4
  • 17
    • 0037329108 scopus 로고    scopus 로고
    • Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
    • Douady C, Delsuc F, Boucher Y, Doolittle W, Douzery E. 2003. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol Biol Evol. 20: 248-254.
    • (2003) Mol Biol Evol , vol.20 , pp. 248-254
    • Douady, C.1    Delsuc, F.2    Boucher, Y.3    Doolittle, W.4    Douzery, E.5
  • 18
    • 0027270477 scopus 로고
    • A complex twintron is excised as four individual introns
    • Drager RG, Hallick RB. 1993. A complex twintron is excised as four individual introns. Nucleic Acids Res. 21:2389-2394.
    • (1993) Nucleic Acids Res , vol.21 , pp. 2389-2394
    • Drager, R.G.1    Hallick, R.B.2
  • 19
    • 0002687402 scopus 로고
    • Origin and evolutionary relationships of retroelements
    • Morse SS, editor New York: Raven Press
    • Eickbush TH. 1994. Origin and evolutionary relationships of retroelements. In: Morse SS, editor. The evolutionary biology of viruses. New York: Raven Press. p. 121-157.
    • (1994) The Evolutionary Biology of Viruses , pp. 121-157
    • Eickbush, T.H.1
  • 20
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • Erixon P, Svennblad B, Britton T, Oxelman B. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst Biol. 52:665-673.
    • (2003) Syst Biol , vol.52 , pp. 665-673
    • Erixon, P.1    Svennblad, B.2    Britton, T.3    Oxelman, B.4
  • 21
    • 0031015291 scopus 로고    scopus 로고
    • The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages
    • Fontaine JM, Goux D, Kloareg B, Loiseaux-de Goër S. 1997. The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages. J Mol Evol. 44:33-42.
    • (1997) J Mol Evol , vol.44 , pp. 33-42
    • Fontaine, J.M.1    Goux, D.2    Kloareg, B.3    Loiseaux-De Goër, S.4
  • 22
    • 0033004743 scopus 로고    scopus 로고
    • Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions
    • Foster P, Hickey D. 1999. Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. J Mol Evol. 48:284-290.
    • (1999) J Mol Evol , vol.48 , pp. 284-290
    • Foster, P.1    Hickey, D.2
  • 23
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman N, Anderson J, Rodrigo A. 2000. Likelihood-based tests of topologies in phylogenetics. Syst Biol. 49:652-670.
    • (2000) Syst Biol , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.2    Rodrigo, A.3
  • 24
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 25
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/ nt
    • Hall T. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/ nt. Nucleic Acids Symp Ser. 41:95-98.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.1
  • 26
    • 34247333809 scopus 로고    scopus 로고
    • Mobile DNA in Old World monkeys: A glimpse through the rhesus macaque genome
    • (15 co-authors).
    • Han K, Konkel M, Xing J, et al. (15 co-authors). 2007. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science. 316:238-240.
    • (2007) Science , vol.316 , pp. 238-240
    • Han, K.1    Konkel, M.2    Xing, J.3
  • 27
    • 0027463557 scopus 로고
    • Ribosomal RNA trees misleading?
    • Hasegawa M, Hashimoto T. 1993. Ribosomal RNA trees misleading? Nature. 361:23.
    • (1993) Nature , vol.361 , pp. 23
    • Hasegawa, M.1    Hashimoto, T.2
  • 28
  • 30
    • 0029836453 scopus 로고    scopus 로고
    • Phylogenetic evidence for horizontal transmission of group i introns in the nuclear ribosomal DNA of mushroom-forming fungi
    • Hibbett D. 1996. Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Mol Biol Evol. 13:903-917.
    • (1996) Mol Biol Evol , vol.13 , pp. 903-917
    • Hibbett, D.1
  • 31
    • 0030034071 scopus 로고    scopus 로고
    • Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA
    • Hickson R, Simon C, Cooper A, Spicer G, Sullivan J, Penny D. 1996. Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. Mol Biol Evol. 13:150-169.
    • (1996) Mol Biol Evol , vol.13 , pp. 150-169
    • Hickson, R.1    Simon, C.2    Cooper, A.3    Spicer, G.4    Sullivan, J.5    Penny, D.6
  • 32
    • 11144277878 scopus 로고    scopus 로고
    • Frequentist propertiesofBayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
    • Huelsenbeck J,RannalaB. 2004. Frequentist propertiesofBayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst Biol. 53:904-913.
    • (2004) Syst Biol , vol.53 , pp. 904-913
    • Huelsenbeck, J.1    Rannala, B.2
  • 33
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck J, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.1    Ronquist, F.2
  • 35
    • 70450268786 scopus 로고    scopus 로고
    • Forthcoming Phylogenetic models and model selection for noncoding DNA
    • doi.10:1007/ s00606-008-0071-76
    • Kelchner SA. Forthcoming. Phylogenetic models and model selection for noncoding DNA. Plant Syst Evol. doi.10:1007/ s00606-008-0071-76
    • Plant Syst Evol
    • Kelchner, S.A.1
  • 36
    • 0036800826 scopus 로고    scopus 로고
    • Group II introns as phylogenetic tools: Structure, function, and evolutionary constraints
    • Kelchner S. 2002. Group II introns as phylogenetic tools: structure, function, and evolutionary constraints. AmJ Bot. 89:1651-1669.
    • (2002) AmJ Bot , vol.89 , pp. 1651-1669
    • Kelchner, S.1
  • 37
    • 0029365329 scopus 로고
    • Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: An example of alignment and data presentation from the frogs
    • Kjer K. 1995. Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. Mol Phylogenet Evol. 4:314-330.
    • (1995) Mol Phylogenet Evol , vol.4 , pp. 314-330
    • Kjer, K.1
  • 38
    • 34147106061 scopus 로고    scopus 로고
    • Phylogenomic analysis of the L1 retrotransposons in Deuterostomia
    • Kordis D, Lovsin N, Gubensek F. 2006. Phylogenomic analysis of the L1 retrotransposons in Deuterostomia. Syst Biol. 55:886-901.
    • (2006) Syst Biol , vol.55 , pp. 886-901
    • Kordis, D.1    Lovsin, N.2    Gubensek, F.3
  • 39
    • 0028181246 scopus 로고
    • Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
    • Lake J. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc Natl Acad Sci USA. 91:1455-1459.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 1455-1459
    • Lake, J.1
  • 41
    • 0038049910 scopus 로고    scopus 로고
    • Group II introns: Structural and catalytic versatility of large natural ribozymes
    • Lehmann K, Schmidt U. 2003. Group II introns: structural and catalytic versatility of large natural ribozymes. Crit Rev Biochem Mol Biol. 38:249-303.
    • (2003) Crit Rev Biochem Mol Biol , vol.38 , pp. 249-303
    • Lehmann, K.1    Schmidt, U.2
  • 42
    • 2442581218 scopus 로고    scopus 로고
    • The importance of proper model assumption in Bayesian phylogenetics
    • Lemmon A, Moriarty E. 2004. The importance of proper model assumption in Bayesian phylogenetics. Syst Biol. 53:265-277.
    • (2004) Syst Biol , vol.53 , pp. 265-277
    • Lemmon, A.1    Moriarty, E.2
  • 43
    • 19044373497 scopus 로고    scopus 로고
    • Polytomies and Bayesian phylogenetic inference
    • Lewis P, Holder M, Holsinger K. 2005. Polytomies and Bayesian phylogenetic inference. Syst Biol. 54:241-253.
    • (2005) Syst Biol , vol.54 , pp. 241-253
    • Lewis, P.1    Holder, M.2    Holsinger, K.3
  • 44
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart P, Steel M, Hendy M, Penny D. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol. 11:605-612.
    • (1994) Mol Biol Evol , vol.11 , pp. 605-612
    • Lockhart, P.1    Steel, M.2    Hendy, M.3    Penny, D.4
  • 45
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik HS, Burke WD, Eickbush TH. 1999. The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol. 16:793-805.
    • (1999) Mol Biol Evol , vol.16 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 46
    • 0036792830 scopus 로고    scopus 로고
    • TRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
    • Marck C, Grosjean H. 2002. tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features. RNA. 8:1189-1232.
    • (2002) RNA , vol.8 , pp. 1189-1232
    • Marck, C.1    Grosjean, H.2
  • 47
    • 33644783626 scopus 로고    scopus 로고
    • Introns and the origin of nucleus-cytosol compartmentalization
    • Martin W, Koonin EV. 2006. Introns and the origin of nucleus-cytosol compartmentalization. Nature. 440:41-45.
    • (2006) Nature , vol.440 , pp. 41-45
    • Martin, W.1    Koonin, E.V.2
  • 49
    • 0033844505 scopus 로고    scopus 로고
    • The evolution of base composition and phylogenetic inference
    • Mooers A, Holmes E. 2000. The evolution of base composition and phylogenetic inference. Trends Ecol Evol. 15:365-369.
    • (2000) Trends Ecol Evol , vol.15 , pp. 365-369
    • Mooers, A.1    Holmes, E.2
  • 50
    • 0028176239 scopus 로고
    • Comparison of molecular and paleontolog-ical data in diatoms suggests a major gap in the fossil record
    • Philippe H, Sorhannus U, Baroin A, Perasso R, Gasse F, Adoutte A. 1994. Comparison of molecular and paleontolog-ical data in diatoms suggests a major gap in the fossil record. J Evol Biol. 7:247-265.
    • (1994) J Evol Biol , vol.7 , pp. 247-265
    • Philippe, H.1    Sorhannus, U.2    Baroin, A.3    Perasso, R.4    Gasse, F.5    Adoutte, A.6
  • 51
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada D, Buckley T. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol. 53:793-808.
    • (2004) Syst Biol , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.2
  • 52
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall K. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.2
  • 53
    • 0037743892 scopus 로고    scopus 로고
    • Retroids in archaea: Phylogeny and lateral origins
    • Rest JS, Mindell DP. 2003. Retroids in archaea: phylogeny and lateral origins. Mol Biol Evol. 20:1134-1142.
    • (2003) Mol Biol Evol , vol.20 , pp. 1134-1142
    • Rest, J.S.1    Mindell, D.P.2
  • 55
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 56
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • SchmidtH, Strimmer K,VingronM,von HaeselerA. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 57
    • 0026261876 scopus 로고
    • Five easy pieces
    • Sharp PA. 1991. "Five easy pieces". Science. 254:663.
    • (1991) Science , vol.254 , pp. 663
    • Sharp, P.A.1
  • 58
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • DOI 10.1080/10635150290069913
    • Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst Biol. 51:492-508. (Pubitemid 35180700)
    • (2002) Systematic Biology , vol.51 , Issue.3 , pp. 492-508
    • Shimodaira, H.1
  • 59
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics. 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 60
    • 0346735286 scopus 로고    scopus 로고
    • Phylogeny and self-splicing ability of the plastid tRNA-Leu group i intron
    • Simon D, Fewer D, Friedl T, Bhattacharya D. 2003. Phylogeny and self-splicing ability of the plastid tRNA-Leu group I intron. J Mol Evol. 57:710-720.
    • (2003) J Mol Evol , vol.57 , pp. 710-720
    • Simon, D.1    Fewer, D.2    Friedl, T.3    Bhattacharya, D.4
  • 61
    • 19944381549 scopus 로고    scopus 로고
    • Divergent histories of rDNA group i introns in the lichen family Physciaceae
    • Simon D, Moline J, Helms G, Friedl T, Bhattacharya D. 2005. Divergent histories of rDNA group I introns in the lichen family Physciaceae. J Mol Evol. 60:434-446.
    • (2005) J Mol Evol , vol.60 , pp. 434-446
    • Simon, D.1    Moline, J.2    Helms, G.3    Friedl, T.4    Bhattacharya, D.5
  • 63
    • 43949153645 scopus 로고
    • Recovering a tree from the Markov leaf colourations it generates under a Markov model
    • Steel M.1994. Recovering a tree from the Markov leaf colourations it generates under a Markov model. Appl Math Lett. 7:19-23.
    • (1994) Appl Math Lett , vol.7 , pp. 19-23
    • Steel, M.1
  • 64
    • 0037058983 scopus 로고    scopus 로고
    • Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
    • Suzuki Y, Glazko G, Nei M. 2002. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci USA. 99:16138-16143.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 16138-16143
    • Suzuki, Y.1    Glazko, G.2    Nei, M.3
  • 66
    • 0034907489 scopus 로고    scopus 로고
    • Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae
    • Tarŕio R, Rodŕiguez-Trelles F, Ayala F. 2001. Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae. Mol Biol Evol. 18:1464-1473.
    • (2001) Mol Biol Evol , vol.18 , pp. 1464-1473
    • Tarŕio, R.1    Rodŕiguez-Trelles, F.2    Ayala, F.3
  • 67
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J, Higgins D, Gibson T. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 68
    • 0020557417 scopus 로고
    • Sequence homology between retroviral reverse transcriptase and putative poly-merases of hepatitis B virus and cauliflower mosaic virus
    • Toh H, Hayashida H, Miyata T. 1983. Sequence homology between retroviral reverse transcriptase and putative poly-merases of hepatitis B virus and cauliflower mosaic virus. Nature. 305:827-829.
    • (1983) Nature , vol.305 , pp. 827-829
    • Toh, H.1    Hayashida, H.2    Miyata, T.3
  • 69
    • 0034910710 scopus 로고    scopus 로고
    • Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases
    • Toor N, Hausner G, Zimmerly S. 2001. Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases. RNA. 7:1142-1152.
    • (2001) RNA , vol.7 , pp. 1142-1152
    • Toor, N.1    Hausner, G.2    Zimmerly, S.3
  • 70
    • 0037121082 scopus 로고    scopus 로고
    • Identification and characterization of bacterial class e group II introns
    • Toro N, Molina-Sanchez M, Fernandez-Lopez M. 2002. Identification and characterization of bacterial class E group II introns. Gene. 299:245-250.
    • (2002) Gene , vol.299 , pp. 245-250
    • Toro, N.1    Molina-Sanchez, M.2    Fernandez-Lopez, M.3
  • 71
    • 0027394389 scopus 로고
    • MRNA splicing and autocatalytic introns: Distant cousins or the products of chemical determinism?
    • Weiner AM. 1993. mRNA splicing and autocatalytic introns: distant cousins or the products of chemical determinism? Cell. 72:161-164.
    • (1993) Cell , vol.72 , pp. 161-164
    • Weiner, A.M.1
  • 72
    • 0043123111 scopus 로고    scopus 로고
    • RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences
    • Wernersson R, Pedersen A. 2003. RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 31:3537-3539.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3537-3539
    • Wernersson, R.1    Pedersen, A.2
  • 73
    • 0025006614 scopus 로고
    • Origin and evolution of retroele-ments based upon their reverse transcriptase sequences
    • Xiong Y, Eickbush T. 1990. Origin and evolution of retroele-ments based upon their reverse transcriptase sequences. EMBO J. 9:3353-3362.
    • (1990) EMBO J , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.2
  • 75
    • 0035282874 scopus 로고    scopus 로고
    • Phylogenetic relationships among group II intron ORFs
    • Zimmerly S, Hausner G, Wu X. 2001. Phylogenetic relationships among group II intron ORFs. Nucleic Acids Res. 29: 1238-1250.
    • (2001) Nucleic Acids Res , vol.29 , pp. 1238-1250
    • Zimmerly, S.1    Hausner, G.2    Wu, X.3


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