Mimivirus

Current Topics in Microbiology and Immunology

Volumn 328, Issue , 2009, Pages 89-121

  Claverie, J M ^a   Abergel, C ^a   Ogata, H ^a  

^a CNRS Aix Marseille University   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; GENE PRODUCT;

CORAL; DNA REPLICATION; DNA VIRUS; GENE STRUCTURE; GENE TRANSFER; GENOME ANALYSIS; GENOMICS; MIMIVIRUS; NONHUMAN; NUCLEOTIDE METABOLISM; PATHOGENICITY; PHYLOGENY; PRIORITY JOURNAL; PROTEOMICS; REVIEW; VIRION; VIRUS GENOME; VIRUS MORPHOLOGY; VIRUS TRANSCRIPTION;

ACANTHAMOEBA POLYPHAGA MIMIVIRUS; DNA VIRUSES; EUKARYOTA; MIMIVIRUS; MIRIDAE;

EID: 58249101558     PISSN: 0070217X     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-540-68618-7_3     Document Type: Review

References (63)

1. Abergel C, Chenivesse S, Byrne D, Suhre K, Arondel V, Claverie JM (2005) Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus. Acta Crystallograph Sect F Struct Biol Cryst Commun. 61:212-215
2. Abergel C, Rudinger-Thirion J, Giege R, Claverie JM (2007) Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of Mimivirus TyrRS and MetRS. J Virol81:12406-12417
3. Bailey TL, Gribskov M (1998) Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14:48-54
4. Bandaru V, Zhao X, Newton MR, Burrows CJ, Wallace SS (2007) Human endonuclease VIII-like (NEIL) proteins in the giant DNA Mimivirus. DNA Repair 6:1629-1641
5. Bawden AL, Glassberg KJ, Diggans J, Shaw R, Farmerie W, Moyer RW (2000) Complete genomic sequence of the Amsacta moorei entomopoxvirus: analysis and comparison with other poxviruses. Virology 274:120-139
6. Bell PJ (2001) Viral eukaryogenesis: was the ancestor of the nucleus a complex DNA virus? J Mol Evol 53:251-256
7. Benarroch D, Shuman S (2006) Characterization of mimivirus NAD+-dependent DNA ligase. Virology 353:133-143
8. Benarroch D, Claverie JM, Raoult D, Shuman S (2006) Characterization of mimivirus DNA topoisomerase Ib suggests horizontal gene transfer between eukaryal viruses and bacteria. J Virol 80: 314-321
9. Berger P, Papazian L, Drancourt M, La Scola B, Auffray JP, Raoult D (2006) Ameba-associated microorganisms and diagnosis of nosocomial pneumonia. Emerg Infect Dis 12:248-255
10. Blanc G, Ogata H, Robert C, Audic S, Suhre K, Vestris G, Claverie JM, Raoult D (2007) Reductive genome evolution from the mother of rickettsia. PLoS Genet 3:e14
11. Chen YH, Kocherginskaya SA, Lin Y, Sriratana B, Lagunas AM, Robbins JB, Mackie RI, Cann IK (2005) Biochemical and mutational analyses of a unique clamp loader complex in the archaeon Methanosarcina acetivorans. J Biol Chem 280:41852-1863
12. Cheng CH, Liu SM, Chow TY, Hsiao YY, Wang DP, Huang JJ, Chen HH (2002) Analysis of the complete genome sequence of the Hz-1 virus suggests that it is related to members of the Baculoviridae. J Virol 76:9024-9034
13. Claverie JM (2006) Viruses take center stage in cellular evolution. Genome Biol 7:110
14. Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE (2006) Mimivirus and the emerging concept of "giant" virus. Virus Res 117:133-144
15. Dare RK, Chittaganpitch M, Erdman DD (2008) Screening pneumonia patients for mimivirus. Emerg Infect Dis 14:465-467
16. Delaroque N, Boland W, Muller DG, Knippers R (2003) Comparisons of two large phaeoviral genomes and evolutionary implications. J Mol Evol 57:613-622
17. Delsuc F, Brinkmann H, Philippe H (2005) Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet 6:361-375
18. Espagne E, Dupuy C, Huguet E, Cattolico L, Provost B, Martins N, Poirie M, Periquet G, Drezen JM (2004) Genome sequence of a polydnavirus: insights into symbiotic viral evolution. Science 306:286-289
19. Filee J, Siguier P, Chandler M (2007) I am what I eat and I eat what I am: acquisition of bacterial genes by giant viruses. Trends Genet 23:10-15
20. Fitzgerald LA, Graves MV, Li X, Feldblyum T, Nierman WC, Van Etten JL (2007) Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology 358:472-484
21. Forterre P (2006) Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain. Proc Natl Acad Sci U S A 103:3669-3674
22. Ghedin E, Claverie JM (2005) Mimivirus relatives in the Sargasso sea. Virol J 2:62
23. Iyer LM, Aravind L, Koonin EV (2001) Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 75:11720-11734
24. Iyer LM, Balaji S, Koonin EV, Aravind L (2006) Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 117:156-184
25. Jeudy S, Coutard B, Lebrun R, Abergel C (2005) Acanthamoeba polyphaga mimivirus NDK: preliminary crystallographic analysis of the first viral nucleoside diphosphate kinase. Acta Crystallograph Sect F Struct Biol Cryst Commun. 61:569-572
26. Jeudy S, Claverie JM, Abergel C (2006) The nucleoside diphosphate kinase from mimivirus: a peculiar affinity for deoxypyrimidine nucleotides. J Bioenerg Biomembr 38:247-254
27. Khan M, La Scola B, Lepidi H, Raoult D (2006) Pneumonia in mice inoculated experimentally with Acanthamoeba polyphaga mimivirus. Microb Pathog 42:56-61
28. La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Raoult D (2003) A giant virus in amoebae. Science 299:2033
29. La Scola B, Marrie TJ, Auffray JP, Raoult D (2005) Mimivirus in pneumonia patients. Emerg Inf Dis 11:449-452
30. Larcher C, Jeller V, Fischer H, Huemer HP (2006) Prevalence of respiratory viruses, including newly identified viruses, in hospitalised children in Austria. Eur J Clin Microbio Infect Dis 25:681-886
31. Majka J, Burgers PM (2004) The PCNA-RFC families of DNA clamps and clamp loaders. Prog Nucleic Acid Res Mol Biol 78:227-260
32. Monier A, Claverie JM, Ogata H (2007) Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics 8:456
33. Monier A, Claverie JM, Ogata H (2008a) Taxonomic distribution of large DNA viruses in the sea. Genome Biol 9:R106
34. Monier A, Larsen JB, Sandaa RA, Bratbak G, Claverie JM, Ogata H (2008b) Marine mimivirus relatives are probably large algal viruses. Virol J 5:12
35. Monne M, Robinson AJ, Boes C, Harbour ME, Fearnley IM, Kunji ER (2007) The mimivirus genome encodes a mitochondrial carrier that transports dATP and dTTP. J Virol 81:3181-3186
36. Moreira D, Lopez-Garcia P (2005) Comment on "The 1.2-megabase genome sequence of Mimivirus". Science 308:1114
37. Nagasaki K, Shirai Y, Tomaru Y, Nishida K, Pietrokovski S (2005) Algal viruses with distinct intraspecies host specificities include identical intein elements. Appl Environ Microbiol 71:3599-3607
38. Nalçacioglu R, Ince IA, Vlak JM, Demirbag Z, van Oers MM (2007) The Chilo iridescent virus DNA polymerase promoter contains an essential AAAAT motif. J Gen Virol 88:2488-2494
39. Ogata H, Abergel C, Raoult D, Claverie J-M (2005a) Response to Comment on "The 1.2-megabase genome sequence of Mimivirus". Science 308:1114
40. Ogata H, Raoult D, Claverie JM (2005b) A new example of viral intein in Mimivirus. Virol J 2:8
41. Pont-Kingdon G, Okada NA, Macfarlane JL, Beagley CT, Watkins-Sims CD, Cavalier-Smith T, Clark-Walker GD, Wolstenholme DR (1998) Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion. J Mol Evol 46:419-431
42. Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM (2004) The 1.2-megabase genome sequence of Mimivirus. Science 306:1344-1350
43. Raoult D, Renesto P, Brouqui P (2006) Laboratory infection of a technician by mimivirus. Ann Intern Med 144:702-703
44. Raoult D, La Scola B, Birtles R (2007) The discovery and characterization of Mimivirus, the largest known virus and putative pneumonia agent. Clin Infect Dis 45:95-102
45. Resch W, Hixson KK, Moore RJ, Lipton MS, Moss B (2007) Protein composition of the vaccinia virus mature virion. Virology 358:233-247
46. Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM (2006) Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol 80:11678-11685
47. Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S et al (2007) The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5:e77
48. Suhre K (2005) Gene and genome duplication in Acanthamoeba polyphaga Mimivirus. J Virol 79:14095-14101
49. Suhre K, Audic S, Claverie JM (2005) Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci U S A 102:14689-14693
50. Suzan-Monti M, La Scola B, Raoult D (2006) Genomic and evolutionary aspects of Mimivirus. Virus Res 117:145-150
51. Suzan-Monti M, La Scola B, Barrassi L, Espinosa L, Raoult D (2007) Ultrastructural characterization of giant volcano-like virus factory of A. polyphaga Mimivirus. PloS ONE 3:e328
52. Takemura M (2001) Poxviruses and the origin of the eukaryotic nucleus. J Mol Evol 52:419-425
53. Vanacova S, Liston DR, Tachezy J, Johnson PJ (2003) Molecular biology of the amitochondriate parasites, Giardia intestinalis, Entamoeba histolytica and Trichomonas vaginalis. Int J Parasitol 33:235-255
54. Van Etten JL (2003) Unusual life style of giant chlorella viruses. Annu Rev Genet 37:153-195
55. Venter JC. Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74
56. Villarreal LP, DeFilippis VR (2000) A hypothesis for DNA viruses as the origin of eukaryotic replication proteins. J Virol 74:7079-7084
57. Weekers PH, Engelberts AM, Vogels GD (1995) Bacteriolytic activities of the free-living soil amoebae, Acanthamoeba castellanii, Acanthamoeba polyphaga and Hartmannella vermiformis. Antonie Van Leeuwenhoek 68:237-243
58. Wilson WH, Schroeder DC, Allen MJ, Holden MT, Parkhill J, Barrell BG, Churcher C, Hamlin N, Mungall K, Norbertczak H, Quail MA, Price C, Rabbinowitsch E, Walker D, Craigon M, Roy D, Ghazal P (2005) Complete genome sequence and lytic phase transcription profile of a Coccolithovirus. Science 309:1090-1092
59. Xiao C, Chipman PR, Battisti AJ, Bowman VD, Renesto P, Raoult D, Rossmann MG (2005) Cryo-electron microscopy of the giant Mimivirus. J Mol Biol 353:493-496
60. Yamada T, Onimatsu H, Van Etten JL (2006) Chlorella viruses. Adv Virus Res 66:293-336
61. Yoder JD, Chen TS, Gagnier CR, Vemulapalli S, Maier CS, Hruby DE (2006) Pox proteomics: mass spectrometry analysis and identification of Vaccinia virion proteins. Virol J 3:10
62. Zachertowska A, Brewer D, Evans DH (2005) Characterization of the major capsid proteins of myxoma virus particles using MALDI-TOF mass spectrometry. J Virol Methods 132:1-12
63. Zhang QY, Xiao F, Xie J, Li ZQ, Gui JF (2004) Complete genome sequence of lymphocystis disease virus isolated from China. J Virol 78:6982-6994