-
1
-
-
84855572697
-
Mapping in vivo signal transduction defects by phosphoproteomics
-
Stasyk T, &, Huber LA, (2012) Mapping in vivo signal transduction defects by phosphoproteomics. Trends Mol Med 18, 43-51.
-
(2012)
Trends Mol Med
, vol.18
, pp. 43-51
-
-
Stasyk, T.1
Huber, L.A.2
-
2
-
-
84855932755
-
Advances in quantitative phosphoproteomics
-
Nilsson CL, (2012) Advances in quantitative phosphoproteomics. Anal Chem 84, 735-746.
-
(2012)
Anal Chem
, vol.84
, pp. 735-746
-
-
Nilsson, C.L.1
-
3
-
-
80055071246
-
Computational analysis of phosphoproteomics: Progresses and perspectives
-
Ren J, Gao X, Liu Z, Cao J, Ma Q, &, Xue Y, (2011) Computational analysis of phosphoproteomics: progresses and perspectives. Curr Protein Pept Sci 12, 591-601.
-
(2011)
Curr Protein Pept Sci
, vol.12
, pp. 591-601
-
-
Ren, J.1
Gao, X.2
Liu, Z.3
Cao, J.4
Ma, Q.5
Xue, Y.6
-
4
-
-
65249137629
-
Global and site-specific quantitative phosphoproteomics: Principles and applications
-
Macek B, Mann M, &, Olsen JV, (2009) Global and site-specific quantitative phosphoproteomics: principles and applications. Annu Rev Pharmacol Toxicol 49, 199-221.
-
(2009)
Annu Rev Pharmacol Toxicol
, vol.49
, pp. 199-221
-
-
MacEk, B.1
Mann, M.2
Olsen, J.V.3
-
5
-
-
39649090531
-
Phosphoproteomics: A possible route to novel biomarkers of breast cancer
-
Metodiev M, &, Alldridge L, (2008) Phosphoproteomics: a possible route to novel biomarkers of breast cancer. Proteomics Clin Appl 2, 181-194.
-
(2008)
Proteomics Clin Appl
, vol.2
, pp. 181-194
-
-
Metodiev, M.1
Alldridge, L.2
-
6
-
-
38349188638
-
Phosphoproteomics for the discovery of kinases as cancer biomarkers and drug targets
-
Yu LR, Issaq HJ, &, Veenstra TD, (2007) Phosphoproteomics for the discovery of kinases as cancer biomarkers and drug targets. Proteomics Clin Appl 1, 1042-1057.
-
(2007)
Proteomics Clin Appl
, vol.1
, pp. 1042-1057
-
-
Yu, L.R.1
Issaq, H.J.2
Veenstra, T.D.3
-
7
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, &, Mann M, (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127, 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
MacEk, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
8
-
-
55049119139
-
Proteomic contributions to personalized cancer care
-
Koomen JM, Haura EB, Bepler G, Sutphen R, Remily-Wood ER, Benson K, Hussein M, Hazlehurst LA, Yeatman TJ, Hildreth LT, et al,. (2008) Proteomic contributions to personalized cancer care. Mol Cell Proteomics 7, 1780-1794.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1780-1794
-
-
Koomen, J.M.1
Haura, E.B.2
Bepler, G.3
Sutphen, R.4
Remily-Wood, E.R.5
Benson, K.6
Hussein, M.7
Hazlehurst, L.A.8
Yeatman, T.J.9
Hildreth, L.T.10
-
9
-
-
36849065315
-
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
-
Rikova K, Guo A, Zeng Q, Possemato A, Yu J, Haack H, Nardone J, Lee K, Reeves C, Li Y, et al,. (2007) Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. Cell 131, 1190-1203.
-
(2007)
Cell
, vol.131
, pp. 1190-1203
-
-
Rikova, K.1
Guo, A.2
Zeng, Q.3
Possemato, A.4
Yu, J.5
Haack, H.6
Nardone, J.7
Lee, K.8
Reeves, C.9
Li, Y.10
-
10
-
-
18244367680
-
Mining the tumor phosphoproteome for cancer markers
-
Lim YP, (2005) Mining the tumor phosphoproteome for cancer markers. Clin Cancer Res 11, 3163-3169.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 3163-3169
-
-
Lim, Y.P.1
-
11
-
-
78650519860
-
Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods
-
Chen X, Wu D, Zhao Y, Wong BH, &, Guo L, (2011) Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods. J Chromatogr B Analyt Technol Biomed Life Sci 879, 25-34.
-
(2011)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.879
, pp. 25-34
-
-
Chen, X.1
Wu, D.2
Zhao, Y.3
Wong, B.H.4
Guo, L.5
-
12
-
-
84860641083
-
Improve the coverage for the analysis of phosphoproteome of HeLa cells by a tandem digestion approach
-
Bian Y, Ye M, Song C, Cheng K, Wang C, Wei X, Zhu J, Chen R, Wang F, &, Zou H, (2012) Improve the coverage for the analysis of phosphoproteome of HeLa cells by a tandem digestion approach. J Proteome Res 11, 2828-2837.
-
(2012)
J Proteome Res
, vol.11
, pp. 2828-2837
-
-
Bian, Y.1
Ye, M.2
Song, C.3
Cheng, K.4
Wang, C.5
Wei, X.6
Zhu, J.7
Chen, R.8
Wang, F.9
Zou, H.10
-
13
-
-
82755163993
-
Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling
-
Engholm-Keller K, Hansen TA, Palmisano G, &, Larsen MR, (2011) Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling. J Proteome Res 10, 5383-5397.
-
(2011)
J Proteome Res
, vol.10
, pp. 5383-5397
-
-
Engholm-Keller, K.1
Hansen, T.A.2
Palmisano, G.3
Larsen, M.R.4
-
14
-
-
77949686964
-
Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis
-
Han G, Ye M, Liu H, Song C, Sun D, Wu Y, Jiang X, Chen R, Wang C, Wang L, et al,. (2010) Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis. Electrophoresis 31, 1080-1089.
-
(2010)
Electrophoresis
, vol.31
, pp. 1080-1089
-
-
Han, G.1
Ye, M.2
Liu, H.3
Song, C.4
Sun, D.5
Wu, Y.6
Jiang, X.7
Chen, R.8
Wang, C.9
Wang, L.10
-
15
-
-
78650373804
-
Network medicine: A network-based approach to human disease
-
Barabasi AL, Gulbahce N, &, Loscalzo J, (2011) Network medicine: a network-based approach to human disease. Nat Rev Genet 12, 56-68.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 56-68
-
-
Barabasi, A.L.1
Gulbahce, N.2
Loscalzo, J.3
-
16
-
-
73949157882
-
Network-based drugs and biomarkers
-
Erler JT, &, Linding R, (2010) Network-based drugs and biomarkers. J Pathol 220, 290-296.
-
(2010)
J Pathol
, vol.220
, pp. 290-296
-
-
Erler, J.T.1
Linding, R.2
-
17
-
-
41149167511
-
Network medicine
-
Pawson T, &, Linding R, (2008) Network medicine. FEBS Lett 582, 1266-1270.
-
(2008)
FEBS Lett
, vol.582
, pp. 1266-1270
-
-
Pawson, T.1
Linding, R.2
-
18
-
-
78650466243
-
A tissue-specific atlas of mouse protein phosphorylation and expression
-
Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, &, Gygi SP, (2010) A tissue-specific atlas of mouse protein phosphorylation and expression. Cell 143, 1174-1189.
-
(2010)
Cell
, vol.143
, pp. 1174-1189
-
-
Huttlin, E.L.1
Jedrychowski, M.P.2
Elias, J.E.3
Goswami, T.4
Rad, R.5
Beausoleil, S.A.6
Villen, J.7
Haas, W.8
Sowa, M.E.9
Gygi, S.P.10
-
19
-
-
84859815885
-
Combination of chemical genetics and phosphoproteomics for kinase signaling analysis enables confident identification of cellular downstream targets
-
Oppermann FS, Grundner-Culemann K, Kumar C, Gruss OJ, Jallepalli PV, &, Daub H, (2012) Combination of chemical genetics and phosphoproteomics for kinase signaling analysis enables confident identification of cellular downstream targets. Mol Cell Proteomics 11, O111.012351.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Oppermann, F.S.1
Grundner-Culemann, K.2
Kumar, C.3
Gruss, O.J.4
Jallepalli, P.V.5
Daub, H.6
-
20
-
-
80555134729
-
Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome
-
Grosstessner-Hain K, Hegemann B, Novatchkova M, Rameseder J, Joughin BA, Hudecz O, Roitinger E, Pichler P, Kraut N, &, Yaffe MB, et al,. (2011) Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome. Mol Cell Proteomics 10, M111.008540.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Grosstessner-Hain, K.1
Hegemann, B.2
Novatchkova, M.3
Rameseder, J.4
Joughin, B.A.5
Hudecz, O.6
Roitinger, E.7
Pichler, P.8
Kraut, N.9
Yaffe, M.B.10
-
21
-
-
78651079847
-
The Plk1-dependent phosphoproteome of the early mitotic spindle
-
Santamaria A, Wang B, Elowe S, Malik R, Zhang F, Bauer M, Schmidt A, Sillje HH, Koerner R, &, Nigg EA, (2011) The Plk1-dependent phosphoproteome of the early mitotic spindle. Mol Cell Proteomics 10, M110.004457.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Santamaria, A.1
Wang, B.2
Elowe, S.3
Malik, R.4
Zhang, F.5
Bauer, M.6
Schmidt, A.7
Sillje, H.H.8
Koerner, R.9
Nigg, E.A.10
-
22
-
-
70349546862
-
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution
-
Holt LJ, Tuch BB, Villen J, Johnson AD, Gygi SP, &, Morgan DO, (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325, 1682-1686.
-
(2009)
Science
, vol.325
, pp. 1682-1686
-
-
Holt, L.J.1
Tuch, B.B.2
Villen, J.3
Johnson, A.D.4
Gygi, S.P.5
Morgan, D.O.6
-
23
-
-
34249947699
-
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage
-
Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, et al,. (2007) ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 316, 1160-1166.
-
(2007)
Science
, vol.316
, pp. 1160-1166
-
-
Matsuoka, S.1
Ballif, B.A.2
Smogorzewska, A.3
McDonald III, E.R.4
Hurov, K.E.5
Luo, J.6
Bakalarski, C.E.7
Zhao, Z.8
Solimini, N.9
Lerenthal, Y.10
-
24
-
-
27144509163
-
A network-based analysis of systemic inflammation in humans
-
Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, et al,. (2005) A network-based analysis of systemic inflammation in humans. Nature 437, 1032-1037.
-
(2005)
Nature
, vol.437
, pp. 1032-1037
-
-
Calvano, S.E.1
Xiao, W.2
Richards, D.R.3
Felciano, R.M.4
Baker, H.V.5
Cho, R.J.6
Chen, R.O.7
Brownstein, B.H.8
Cobb, J.P.9
Tschoeke, S.K.10
-
25
-
-
84874969184
-
PANTHER in 2013: Modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
-
Mi H, Muruganujan A, &, Thomas PD, (2013) PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res 41, D377-D386.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Mi, H.1
Muruganujan, A.2
Thomas, P.D.3
-
26
-
-
58149193234
-
STRING 8 - A global view on proteins and their functional interactions in 630 organisms
-
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, et al,. (2009) STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37, D412-D416.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
Doerks, T.7
Julien, P.8
Roth, A.9
Simonovic, M.10
-
27
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, &, Hattori M, (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32, D277-D280.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
28
-
-
84865713442
-
Global quantitative phosphoproteome analysis of human tumor xenografts treated with a CD44 antagonist
-
Weigand S, Herting F, Maisel D, Nopora A, Voss E, Schaab C, Klammer M, &, Tebbe A, (2012) Global quantitative phosphoproteome analysis of human tumor xenografts treated with a CD44 antagonist. Cancer Res 72, 4329-4339.
-
(2012)
Cancer Res
, vol.72
, pp. 4329-4339
-
-
Weigand, S.1
Herting, F.2
Maisel, D.3
Nopora, A.4
Voss, E.5
Schaab, C.6
Klammer, M.7
Tebbe, A.8
-
29
-
-
77953936773
-
Identifying differentially regulated subnetworks from phosphoproteomic data
-
Klammer M, Godl K, Tebbe A, &, Schaab C, (2010) Identifying differentially regulated subnetworks from phosphoproteomic data. BMC Bioinformatics 11, 351.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 351
-
-
Klammer, M.1
Godl, K.2
Tebbe, A.3
Schaab, C.4
-
30
-
-
73249115991
-
Experimental and computational tools useful for (re)construction of dynamic kinase-substrate networks
-
Tan CS, &, Linding R, (2009) Experimental and computational tools useful for (re)construction of dynamic kinase-substrate networks. Proteomics 9, 5233-5242.
-
(2009)
Proteomics
, vol.9
, pp. 5233-5242
-
-
Tan, C.S.1
Linding, R.2
-
31
-
-
65349100540
-
Reconstructing regulatory kinase pathways from phosphopeptide data: A bioinformatics approach
-
Puente LG, Lee RE, &, Megeney LA, (2009) Reconstructing regulatory kinase pathways from phosphopeptide data: a bioinformatics approach. Methods Mol Biol 527, 311-319.
-
(2009)
Methods Mol Biol
, vol.527
, pp. 311-319
-
-
Puente, L.G.1
Lee, R.E.2
Megeney, L.A.3
-
32
-
-
0042622251
-
Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
-
Obenauer JC, Cantley LC, &, Yaffe MB, (2003) Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res 31, 3635-3641.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3635-3641
-
-
Obenauer, J.C.1
Cantley, L.C.2
Yaffe, M.B.3
-
33
-
-
2942564430
-
Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
-
Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, &, Brunak S, (2004) Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 4, 1633-1649.
-
(2004)
Proteomics
, vol.4
, pp. 1633-1649
-
-
Blom, N.1
Sicheritz-Ponten, T.2
Gupta, R.3
Gammeltoft, S.4
Brunak, S.5
-
34
-
-
52649145895
-
GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy
-
Xue Y, Ren J, Gao X, Jin C, Wen L, &, Yao X, (2008) GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy. Mol Cell Proteomics 7, 1598-1608.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1598-1608
-
-
Xue, Y.1
Ren, J.2
Gao, X.3
Jin, C.4
Wen, L.5
Yao, X.6
-
35
-
-
34250743173
-
Systematic discovery of in vivo phosphorylation networks
-
Linding R, Jensen LJ, Ostheimer GJ, Van Vugt MA, Jorgensen C, Miron IM, Diella F, Colwill K, Taylor L, Elder K, et al,. (2007) Systematic discovery of in vivo phosphorylation networks. Cell 129, 1415-1426.
-
(2007)
Cell
, vol.129
, pp. 1415-1426
-
-
Linding, R.1
Jensen, L.J.2
Ostheimer, G.J.3
Van Vugt, M.A.4
Jorgensen, C.5
Miron, I.M.6
Diella, F.7
Colwill, K.8
Taylor, L.9
Elder, K.10
-
36
-
-
38549109487
-
NetworKIN: A resource for exploring cellular phosphorylation networks
-
Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, &, Pawson T, (2008) NetworKIN: a resource for exploring cellular phosphorylation networks. Nucleic Acids Res 36, D695-D699.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Linding, R.1
Jensen, L.J.2
Pasculescu, A.3
Olhovsky, M.4
Colwill, K.5
Bork, P.6
Yaffe, M.B.7
Pawson, T.8
-
37
-
-
84878493089
-
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes
-
Liu Z, Ren J, Cao J, He J, Yao X, Jin C, &, Xue Y, (2013) Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes. Brief Bioinform 14, 344-360.
-
(2013)
Brief Bioinform
, vol.14
, pp. 344-360
-
-
Liu, Z.1
Ren, J.2
Cao, J.3
He, J.4
Yao, X.5
Jin, C.6
Xue, Y.7
-
38
-
-
84867153786
-
Systematic analysis of protein phosphorylation networks from phosphoproteomic data
-
Song C, Ye M, Liu Z, Cheng H, Jiang X, Han G, Songyang Z, Tan Y, Wang H, Ren J, et al,. (2012) Systematic analysis of protein phosphorylation networks from phosphoproteomic data. Mol Cell Proteomics 11, 1070-1083.
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 1070-1083
-
-
Song, C.1
Ye, M.2
Liu, Z.3
Cheng, H.4
Jiang, X.5
Han, G.6
Songyang, Z.7
Tan, Y.8
Wang, H.9
Ren, J.10
-
39
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, &, Ideker T, (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13, 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
40
-
-
84860873858
-
Network medicine strikes a blow against breast cancer
-
Erler JT, &, Linding R, (2012) Network medicine strikes a blow against breast cancer. Cell 149, 731-733.
-
(2012)
Cell
, vol.149
, pp. 731-733
-
-
Erler, J.T.1
Linding, R.2
-
41
-
-
54249117296
-
Phosphorylation networks regulating JNK activity in diverse genetic backgrounds
-
Bakal C, Linding R, Llense F, Heffern E, Martin-Blanco E, Pawson T, &, Perrimon N, (2008) Phosphorylation networks regulating JNK activity in diverse genetic backgrounds. Science 322, 453-456.
-
(2008)
Science
, vol.322
, pp. 453-456
-
-
Bakal, C.1
Linding, R.2
Llense, F.3
Heffern, E.4
Martin-Blanco, E.5
Pawson, T.6
Perrimon, N.7
-
42
-
-
84860717549
-
Phosphoproteomic analysis of cells treated with longevity-related autophagy inducers
-
Bennetzen MV, Marino G, Pultz D, Morselli E, Faergeman NJ, Kroemer G, &, Andersen JS, (2012) Phosphoproteomic analysis of cells treated with longevity-related autophagy inducers. Cell Cycle 11, 1827-1840.
-
(2012)
Cell Cycle
, vol.11
, pp. 1827-1840
-
-
Bennetzen, M.V.1
Marino, G.2
Pultz, D.3
Morselli, E.4
Faergeman, N.J.5
Kroemer, G.6
Andersen, J.S.7
-
43
-
-
67849106825
-
Phosphorylation dynamics during early differentiation of human embryonic stem cells
-
Van Hoof D, Munoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, &, Krijgsveld J, (2009) Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell 5, 214-226.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 214-226
-
-
Van Hoof, D.1
Munoz, J.2
Braam, S.R.3
Pinkse, M.W.4
Linding, R.5
Heck, A.J.6
Mummery, C.L.7
Krijgsveld, J.8
-
44
-
-
84874259874
-
In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis
-
Zanivan S, Meves A, Behrendt K, Schoof EM, Neilson LJ, Cox J, Tang HR, Kalna G, Van Ree JH, Van Deursen JM, et al,. (2013) In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis. Cell Rep 3, 552-566.
-
(2013)
Cell Rep
, vol.3
, pp. 552-566
-
-
Zanivan, S.1
Meves, A.2
Behrendt, K.3
Schoof, E.M.4
Neilson, L.J.5
Cox, J.6
Tang, H.R.7
Kalna, G.8
Van Ree, J.H.9
Van Deursen, J.M.10
-
45
-
-
78651317205
-
A summary of computational resources for protein phosphorylation
-
Xue Y, Gao X, Cao J, Liu Z, Jin C, Wen L, Yao X, &, Ren J, (2010) A summary of computational resources for protein phosphorylation. Curr Protein Pept Sci 11, 485-496.
-
(2010)
Curr Protein Pept Sci
, vol.11
, pp. 485-496
-
-
Xue, Y.1
Gao, X.2
Cao, J.3
Liu, Z.4
Jin, C.5
Wen, L.6
Yao, X.7
Ren, J.8
-
46
-
-
78649938817
-
ATM-dependent and -independent dynamics of the nuclear phosphoproteome after DNA damage
-
Bensimon A, Schmidt A, Ziv Y, Elkon R, Wang SY, Chen DJ, Aebersold R, &, Shiloh Y, (2010) ATM-dependent and -independent dynamics of the nuclear phosphoproteome after DNA damage. Sci Signal 3, rs3.
-
(2010)
Sci Signal
, vol.3
-
-
Bensimon, A.1
Schmidt, A.2
Ziv, Y.3
Elkon, R.4
Wang, S.Y.5
Chen, D.J.6
Aebersold, R.7
Shiloh, Y.8
-
47
-
-
80053374337
-
Proteomic and phosphoproteomic comparison of human ES and iPS cells
-
Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, et al,. (2011) Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nat Methods 8, 821-827.
-
(2011)
Nat Methods
, vol.8
, pp. 821-827
-
-
Phanstiel, D.H.1
Brumbaugh, J.2
Wenger, C.D.3
Tian, S.4
Probasco, M.D.5
Bailey, D.J.6
Swaney, D.L.7
Tervo, M.A.8
Bolin, J.M.9
Ruotti, V.10
-
48
-
-
79959735228
-
Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells
-
Kettenbach AN, Schweppe DK, Faherty BK, Pechenick D, Pletnev AA, &, Gerber SA, (2011) Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells. Sci Signal 4, rs5.
-
(2011)
Sci Signal
, vol.4
-
-
Kettenbach, A.N.1
Schweppe, D.K.2
Faherty, B.K.3
Pechenick, D.4
Pletnev, A.A.5
Gerber, S.A.6
-
49
-
-
27944499451
-
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
-
Schwartz D, &, Gygi SP, (2005) An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat Biotechnol 23, 1391-1398.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1391-1398
-
-
Schwartz, D.1
Gygi, S.P.2
-
50
-
-
84875699641
-
Kinase-substrate enrichment analysis provides insights into the heterogeneity of signaling pathway activation in leukemia cells
-
Casado P, Rodriguez-Prados JC, Cosulich SC, Guichard S, Vanhaesebroeck B, Joel S, &, Cutillas PR, (2013) Kinase-substrate enrichment analysis provides insights into the heterogeneity of signaling pathway activation in leukemia cells. Sci Signal 6, rs6.
-
(2013)
Sci Signal
, vol.6
-
-
Casado, P.1
Rodriguez-Prados, J.C.2
Cosulich, S.C.3
Guichard, S.4
Vanhaesebroeck, B.5
Joel, S.6
Cutillas, P.R.7
-
51
-
-
84877618069
-
Is phosphoproteomics ready for clinical research?
-
Iliuk AB, &, Tao WA, (2013) Is phosphoproteomics ready for clinical research? Clin Chim Acta 420, 23-27.
-
(2013)
Clin Chim Acta
, vol.420
, pp. 23-27
-
-
Iliuk, A.B.1
Tao, W.A.2
-
52
-
-
77957956535
-
Tracing cancer networks with phosphoproteomics
-
Solit DB, &, Mellinghoff IK, (2010) Tracing cancer networks with phosphoproteomics. Nat Biotechnol 28, 1028-1029.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1028-1029
-
-
Solit, D.B.1
Mellinghoff, I.K.2
-
53
-
-
79958696336
-
Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling
-
Yu Y, Yoon SO, Poulogiannis G, Yang Q, Ma XM, Villen J, Kubica N, Hoffman GR, Cantley LC, Gygi SP, et al,. (2011) Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling. Science 332, 1322-1326.
-
(2011)
Science
, vol.332
, pp. 1322-1326
-
-
Yu, Y.1
Yoon, S.O.2
Poulogiannis, G.3
Yang, Q.4
Ma, X.M.5
Villen, J.6
Kubica, N.7
Hoffman, G.R.8
Cantley, L.C.9
Gygi, S.P.10
-
54
-
-
79958696694
-
The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling
-
Hsu PP, Kang SA, Rameseder J, Zhang Y, Ottina KA, Lim D, Peterson TR, Choi Y, Gray NS, Yaffe MB, et al,. (2011) The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling. Science 332, 1317-1322.
-
(2011)
Science
, vol.332
, pp. 1317-1322
-
-
Hsu, P.P.1
Kang, S.A.2
Rameseder, J.3
Zhang, Y.4
Ottina, K.A.5
Lim, D.6
Peterson, T.R.7
Choi, Y.8
Gray, N.S.9
Yaffe, M.B.10
-
55
-
-
84865802221
-
Phosphosignature predicts dasatinib response in non-small cell lung cancer
-
Klammer M, Kaminski M, Zedler A, Oppermann F, Blencke S, Marx S, Muller S, Tebbe A, Godl K, &, Schaab C, (2012) Phosphosignature predicts dasatinib response in non-small cell lung cancer. Mol Cell Proteomics 11, 651-668.
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 651-668
-
-
Klammer, M.1
Kaminski, M.2
Zedler, A.3
Oppermann, F.4
Blencke, S.5
Marx, S.6
Muller, S.7
Tebbe, A.8
Godl, K.9
Schaab, C.10
-
57
-
-
29144531173
-
The druggable genome: An update
-
Russ AP, &, Lampel S, (2005) The druggable genome: an update. Drug Discov Today 10, 1607-1610.
-
(2005)
Drug Discov Today
, vol.10
, pp. 1607-1610
-
-
Russ, A.P.1
Lampel, S.2
-
58
-
-
67650073265
-
Cell cycle kinases as therapeutic targets for cancer
-
Lapenna S, &, Giordano A, (2009) Cell cycle kinases as therapeutic targets for cancer. Nat Rev Drug Discov 8, 547-566.
-
(2009)
Nat Rev Drug Discov
, vol.8
, pp. 547-566
-
-
Lapenna, S.1
Giordano, A.2
-
59
-
-
84860851412
-
Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks
-
Lee MJ, Ye AS, Gardino AK, Heijink AM, Sorger PK, MacBeath G, &, Yaffe MB, (2012) Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks. Cell 149, 780-794.
-
(2012)
Cell
, vol.149
, pp. 780-794
-
-
Lee, M.J.1
Ye, A.S.2
Gardino, A.K.3
Heijink, A.M.4
Sorger, P.K.5
MacBeath, G.6
Yaffe, M.B.7
-
60
-
-
84863011640
-
Combined experimental and computational analysis of DNA damage signaling reveals context-dependent roles for Erk in apoptosis and G1/S arrest after genotoxic stress
-
Tentner AR, Lee MJ, Ostheimer GJ, Samson LD, Lauffenburger DA, &, Yaffe MB, (2012) Combined experimental and computational analysis of DNA damage signaling reveals context-dependent roles for Erk in apoptosis and G1/S arrest after genotoxic stress. Mol Syst Biol 8, 568.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 568
-
-
Tentner, A.R.1
Lee, M.J.2
Ostheimer, G.J.3
Samson, L.D.4
Lauffenburger, D.A.5
Yaffe, M.B.6
-
61
-
-
84876557296
-
Construction of human activity-based phosphorylation networks
-
Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, et al,. (2013) Construction of human activity-based phosphorylation networks. Mol Syst Biol 9, 655.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 655
-
-
Newman, R.H.1
Hu, J.2
Rho, H.S.3
Xie, Z.4
Woodard, C.5
Neiswinger, J.6
Cooper, C.7
Shirley, M.8
Clark, H.M.9
Hu, S.10
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