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Volumn 23, Issue 11, 2005, Pages 1391-1398

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMES; ITERATIVE METHODS; SET THEORY;

EID: 27944499451     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt1146     Document Type: Article
Times cited : (759)

References (29)
  • 1
    • 0042203565 scopus 로고    scopus 로고
    • SH2 and PTB domains in tyrosine kinase signaling
    • Schlessinger, J. & Lemmon, M.A. SH2 and PTB domains in tyrosine kinase signaling. Sci. STKE 2003, RE12 (2003).
    • (2003) Sci. STKE , vol.2003
    • Schlessinger, J.1    Lemmon, M.A.2
  • 2
    • 18344386695 scopus 로고    scopus 로고
    • SCF-mediated protein degradation and cell cycle control
    • Ang, X.L. & Wade Harper, J. SCF-mediated protein degradation and cell cycle control. Oncogene 24, 2860-2870 (2005).
    • (2005) Oncogene , vol.24 , pp. 2860-2870
    • Ang, X.L.1    Wade Harper, J.2
  • 3
    • 20444383859 scopus 로고    scopus 로고
    • Protein phosphorylation in signaling - 50 Years and counting
    • Pawson, T. & Scott, J.D. Protein phosphorylation in signaling - 50 years and counting. Trends Biochem. Sci. 30, 286-290 (2005).
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 286-290
    • Pawson, T.1    Scott, J.D.2
  • 4
    • 0042622251 scopus 로고    scopus 로고
    • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
    • Obenauer, J.C., Cantley, L.C. & Yaffe, M.B. Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res. 31, 3635-3641 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3635-3641
    • Obenauer, J.C.1    Cantley, L.C.2    Yaffe, M.B.3
  • 5
    • 18744429842 scopus 로고    scopus 로고
    • Hitting the target: Emerging technologies in the search for kinase substrates
    • Manning, B.D. & Cantley, L.C. Hitting the target: emerging technologies in the search for kinase substrates. Sci. STKE 2002, PE49 (2002).
    • (2002) Sci. STKE , vol.2002
    • Manning, B.D.1    Cantley, L.C.2
  • 6
    • 21144458164 scopus 로고    scopus 로고
    • Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
    • Rush, J. et al. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat. Biotechnol. 23, 94-101 (2005).
    • (2005) Nat. Biotechnol. , vol.23 , pp. 94-101
    • Rush, J.1
  • 7
    • 0036198435 scopus 로고    scopus 로고
    • Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
    • Ficarro, S.B. et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20, 301-305 (2002).
    • (2002) Nat. Biotechnol. , vol.20 , pp. 301-305
    • Ficarro, S.B.1
  • 8
    • 4344574540 scopus 로고    scopus 로고
    • Large-scale characterization of HeLa cell nuclear phosphoproteins
    • Beausoleil, S.A. et al. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc. Natl. Acad. Sci. USA 101, 12130-12135 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 12130-12135
    • Beausoleil, S.A.1
  • 9
    • 14044254894 scopus 로고    scopus 로고
    • Proteomic analysis of in vivo phosphorylated synaptic proteins
    • Collins, M.O. et al. Proteomic analysis of in vivo phosphorylated synaptic proteins. J. Biol. Chem. 280, 5972-5982 (2005).
    • (2005) J. Biol. Chem. , vol.280 , pp. 5972-5982
    • Collins, M.O.1
  • 11
    • 15944377809 scopus 로고    scopus 로고
    • Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
    • Gruhler, A. et al. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 4, 310-327 (2005).
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 310-327
    • Gruhler, A.1
  • 12
    • 4544291080 scopus 로고    scopus 로고
    • Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database
    • Nuhse, T.S., Stensballe, A., Jensen, O.N. & Peck, S.C. Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell 16, 2394-2405 (2004).
    • (2004) Plant Cell , vol.16 , pp. 2394-2405
    • Nuhse, T.S.1    Stensballe, A.2    Jensen, O.N.3    Peck, S.C.4
  • 13
    • 15944373459 scopus 로고    scopus 로고
    • Mass spectrometric contributions to the practice of phosphorylation site mapping through 2003: A literature review
    • Loyet, K.M., Stults, J.T. & Arnott, D. Mass spectrometric contributions to the practice of phosphorylation site mapping through 2003: a literature review. Mol. Cell. Proteomics 4, 235-245 (2005).
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 235-245
    • Loyet, K.M.1    Stults, J.T.2    Arnott, D.3
  • 14
    • 0034730161 scopus 로고    scopus 로고
    • Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
    • Bussemaker, H.J., Li, H. & Siggia, E.D. Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis. Proc. Natl. Acad. Sci. USA 97, 10096-10100 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 10096-10100
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 16
    • 13244289881 scopus 로고    scopus 로고
    • Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins
    • Diella, F. et al. Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics 5, 79 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 79
    • Diella, F.1
  • 17
    • 0031684427 scopus 로고    scopus 로고
    • Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
    • Rigoutsos, I. & Floratos, A. Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm. Bioinformatics 14, 55-67 (1998).
    • (1998) Bioinformatics , vol.14 , pp. 55-67
    • Rigoutsos, I.1    Floratos, A.2
  • 18
    • 0029159799 scopus 로고
    • Finding flexible patterns in unaligned protein sequences
    • Jonassen, I., Collins, J.F. & Higgins, D.G. Finding flexible patterns in unaligned protein sequences. Protein Sci. 4, 1587-1595 (1995).
    • (1995) Protein Sci. , vol.4 , pp. 1587-1595
    • Jonassen, I.1    Collins, J.F.2    Higgins, D.G.3
  • 19
    • 0043123063 scopus 로고    scopus 로고
    • Gibbs Recursive Sampler: Finding transcription factor binding sites
    • Thompson, W., Rouchka, E.C. & Lawrence, C.E. Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res. 31, 3580-3585 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3580-3585
    • Thompson, W.1    Rouchka, E.C.2    Lawrence, C.E.3
  • 21
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider, T.D. & Stephens, R.M. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18, 6097-6100 (1990).
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 24
    • 0030003813 scopus 로고    scopus 로고
    • Characterization of the transforming activity of p80, a hyperphosphorylated protein in a Ki-1 lymphoma cell line with chromosomal translocation t(2;5)
    • Fujimoto, J. et al. Characterization of the transforming activity of p80, a hyperphosphorylated protein in a Ki-1 lymphoma cell line with chromosomal translocation t(2;5). Proc. Natl. Acad. Sci. USA 93, 4181-4186 (1996).
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 4181-4186
    • Fujimoto, J.1
  • 25
    • 0034744439 scopus 로고    scopus 로고
    • Three classes of C2H2 zinc finger proteins
    • Iuchi, S. Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58, 625-635 (2001).
    • (2001) Cell. Mol. Life Sci. , vol.58 , pp. 625-635
    • Iuchi, S.1
  • 26
    • 0028875162 scopus 로고
    • Recognition and specificity in protein tyrosine kinase-mediated signalling
    • Songyang, Z. & Cantley, L.C. Recognition and specificity in protein tyrosine kinase-mediated signalling. Trends Biochem. Sci. 20, 470-475 (1995).
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 470-475
    • Songyang, Z.1    Cantley, L.C.2
  • 27
    • 0028986902 scopus 로고
    • pp60c-src expression is induced by activation of normal human T lymphocytes
    • Branch, D.R. & Mills, G.B. pp60c-src expression is induced by activation of normal human T lymphocytes. J. Immunol. 154, 3678-3685 (1995).
    • (1995) J. Immunol. , vol.154 , pp. 3678-3685
    • Branch, D.R.1    Mills, G.B.2
  • 28
    • 4644305806 scopus 로고    scopus 로고
    • Subsets of the major tyrosine phosphorylation sites in Crk-associated substrate (CAS) are sufficient to promote cell migration
    • Shin, N.Y. et al. Subsets of the major tyrosine phosphorylation sites in Crk-associated substrate (CAS) are sufficient to promote cell migration. J. Biol. Chem. 279, 38331-38337 (2004).
    • (2004) J. Biol. Chem. , vol.279 , pp. 38331-38337
    • Shin, N.Y.1
  • 29
    • 0029645432 scopus 로고
    • Mining genomes: Correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases
    • Yates, J.R. III, Eng, J.K. & McCormack, A.L. Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. Anal. Chem. 67, 3202-3210 (1995).
    • (1995) Anal. Chem. , vol.67 , pp. 3202-3210
    • Yates III, J.R.1    Eng, J.K.2    McCormack, A.L.3


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