-
1
-
-
18744361871
-
Enhancement of cellular memory by reducing stochastic transitions
-
15889097 10.1038/nature03524 1:CAS:528:DC%2BD2MXktVWhtLk%3D
-
Acar M, Becskei A, van Oudenaarden A (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature 435:228-232
-
(2005)
Nature
, vol.435
, pp. 228-232
-
-
Acar, M.1
Becskei, A.2
Van Oudenaarden, A.3
-
2
-
-
58149382580
-
MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc
-
19066217 10.1073/pnas.0811166106 1:CAS:528:DC%2BD1cXhsFCltr3O
-
Aguda BD, Kim Y, Piper-Hunter MG, Friedman A, Marsh CB (2008) MicroRNA regulation of a cancer network: consequences of the feedback loops involving miR-17-92, E2F, and Myc. Proc Natl Acad Sci USA 105:19678-19683
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19678-19683
-
-
Aguda, B.D.1
Kim, Y.2
Piper-Hunter, M.G.3
Friedman, A.4
Marsh, C.B.5
-
3
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
17510665 10.1038/nrg2102 1:CAS:528:DC%2BD2sXlsVSktro%3D
-
Alon U (2007) Network motifs: theory and experimental approaches. Nat Rev Genet 8:450-461
-
(2007)
Nat Rev Genet
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
4
-
-
28044471565
-
MicroRNA function in animal development and human disease
-
16224045 10.1242/dev.02073 1:CAS:528:DC%2BD2MXht12gsbjI
-
Alvarez-Garcia I, Miska E (2005) MicroRNA function in animal development and human disease. Development 132:4653-4662
-
(2005)
Development
, vol.132
, pp. 4653-4662
-
-
Alvarez-Garcia, I.1
Miska, E.2
-
5
-
-
4644309196
-
The functions of animal microRNAs
-
15372042 10.1038/nature02871 1:CAS:528:DC%2BD2cXnsFaiu7g%3D
-
Ambros V (2004) The functions of animal microRNAs. Nature 431:350-355
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
6
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
10.1016/j.cell.2011.01.030
-
Balàsi G, van Oudenaarden A, Collins JJ (2011) Cellular decision making and biological noise: from microbes to mammals. Cell 144:910-925
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balàsi, G.1
Van Oudenaarden, A.2
Collins, J.J.3
-
7
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
14744438 10.1016/S0092-8674(04)00045-5 1:CAS:528:DC%2BD2cXhtVals7o%3D
-
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281-297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
8
-
-
0009952303
-
Robustness of the bistable behavior of a biological signaling feedback loop
-
12779455 10.1063/1.1350440 1:CAS:528:DC%2BD3MXisFOltr0%3D
-
Bhalla US, Iyengar R (2001) Robustness of the bistable behavior of a biological signaling feedback loop. Chaos 11:221-226
-
(2001)
Chaos
, vol.11
, pp. 221-226
-
-
Bhalla, U.S.1
Iyengar, R.2
-
9
-
-
0037047611
-
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network
-
12169734 10.1126/science.1068873 1:CAS:528:DC%2BD38Xmt1Ckt7Y%3D
-
Bhalla US, Ram PT, Iyengar R (2002) MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network. Science 297:1018-1023
-
(2002)
Science
, vol.297
, pp. 1018-1023
-
-
Bhalla, U.S.1
Ram, P.T.2
Iyengar, R.3
-
10
-
-
54049084380
-
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition
-
18829540 10.1158/0008-5472.CAN-08-1942 1:CAS:528:DC%2BD1cXhtF2msLzK
-
Bracken CP et al (2008) A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res 68:7846-7854
-
(2008)
Cancer Res
, vol.68
, pp. 7846-7854
-
-
Bracken, C.P.1
-
11
-
-
70849098812
-
Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast
-
19805129 10.1073/pnas.0909641106 1:CAS:528:DC%2BD1MXhsVWrsLjO
-
Bumgarner SL, Dowell RD, Grisafi P, Gifford DK, Fink GR (2009) Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proc Natl Acad Sci USA 106:18321-18326
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18321-18326
-
-
Bumgarner, S.L.1
Dowell, R.D.2
Grisafi, P.3
Gifford, D.K.4
Fink, G.R.5
-
12
-
-
34547960488
-
MicroRNA functions
-
17506695 10.1146/annurev.cellbio.23.090506.123406 1:CAS:528: DC%2BD2sXhtlartr3M
-
Bushati N, Cohen SM (2007) MicroRNA functions. Annu Rev Cell Dev Biol 23:175-205
-
(2007)
Annu Rev Cell Dev Biol
, vol.23
, pp. 175-205
-
-
Bushati, N.1
Cohen, S.M.2
-
13
-
-
53049099395
-
Tweaking biological switches through a better understanding of bistability behavior
-
18804166 10.1016/j.copbio.2008.08.010 1:CAS:528:DC%2BD1cXht1SntL%2FM
-
Chatterjee A, Kaznessis YN, Hu W (2008) Tweaking biological switches through a better understanding of bistability behavior. Curr Opin Biotech 19:475-481
-
(2008)
Curr Opin Biotech
, vol.19
, pp. 475-481
-
-
Chatterjee, A.1
Kaznessis, Y.N.2
Hu, W.3
-
14
-
-
42249093319
-
LNA-mediated microRNA silencing in non-human primates
-
18368051 10.1038/nature06783
-
Elmèn J et al (2008) LNA-mediated microRNA silencing in non-human primates. Nature 452:896-899
-
(2008)
Nature
, vol.452
, pp. 896-899
-
-
Elmèn, J.1
-
15
-
-
33645294070
-
Oncomirs-microRNAs with a role in cancer
-
16557279 10.1038/nrc1840 1:CAS:528:DC%2BD28XivVyqtrs%3D
-
Esquela-Kerscher A, Slack FJ (2006) Oncomirs-microRNAs with a role in cancer. Nat Rev Cancer 6:259-269
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 259-269
-
-
Esquela-Kerscher, A.1
Slack, F.J.2
-
16
-
-
28344438648
-
A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPα regulates human granulopoiesis
-
16325577 10.1016/j.cell.2005.09.023 1:CAS:528:DC%2BD2MXhtlWntLjL
-
Fazi F et al (2005) A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPα regulates human granulopoiesis. Cell 123:819-831
-
(2005)
Cell
, vol.123
, pp. 819-831
-
-
Fazi, F.1
-
17
-
-
0036532226
-
Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
-
11891111 10.1016/S0955-0674(02)00314-9 1:CAS:528:DC%2BD38XhvVCntrk%3D
-
Ferrell JE (2002) Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 14:140-148
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 140-148
-
-
Ferrell, J.E.1
-
18
-
-
0032496358
-
The biochemical basis of an all-or-none cell fate switch in Xenopus Oocytes
-
9572732 10.1126/science.280.5365.895 1:CAS:528:DyaK1cXjtFKnsbo%3D
-
Ferrell JE, Machleder EM (1998) The biochemical basis of an all-or-none cell fate switch in Xenopus Oocytes. Science 280:895-898
-
(1998)
Science
, vol.280
, pp. 895-898
-
-
Ferrell, J.E.1
Machleder, E.M.2
-
19
-
-
0037605637
-
Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible
-
12779456 10.1063/1.1349894 1:CAS:528:DC%2BD3MXisFOltro%3D
-
Ferrell JE, Xiong W (2001) Bistability in cell signaling: how to make continuous processes discontinuous, and reversible processes irreversible. Chaos 11:227-236
-
(2001)
Chaos
, vol.11
, pp. 227-236
-
-
Ferrell, J.E.1
Xiong, W.2
-
20
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
18197166 10.1038/nrg2290 1:CAS:528:DC%2BD1cXnt1ensA%3D%3D
-
Filipowicz W, Bhattacharyya SN, Sonenberg N (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9:102-114
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
21
-
-
28844464035
-
Core genetic module: The mixed feedback loop
-
10.1103/PhysRevE.72.031908
-
Francois P, Hakim V (2005) Core genetic module: the mixed feedback loop. Phys Rev E 72:031908
-
(2005)
Phys Rev e
, vol.72
, pp. 031908
-
-
Francois, P.1
Hakim, V.2
-
22
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 430:339-342
-
(2000)
Nature
, vol.430
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
23
-
-
81355149823
-
Inhibition of rhythmic spiking by colored noise in neural systems
-
22942918 10.1007/s11571-011-9160-2
-
Guo D (2011) Inhibition of rhythmic spiking by colored noise in neural systems. Cogn Neurodyn 5:293-300
-
(2011)
Cogn Neurodyn
, vol.5
, pp. 293-300
-
-
Guo, D.1
-
24
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
20703300 10.1038/nature09267 1:CAS:528:DC%2BC3cXhtVais7nN
-
Guo H, Ingolia NT, Weissman JS, Bartel DP (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466:835-840
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
25
-
-
0034050722
-
Noise-based switches and amplifiers for gene expression
-
10681449 10.1073/pnas.040411297 1:CAS:528:DC%2BD3cXhslKhsb0%3D
-
Hasty J, Pradines J, Dolnik M, Collins JJ (2000) Noise-based switches and amplifiers for gene expression. Proc Natl Acad Sci USA 97:2075-2080
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 2075-2080
-
-
Hasty, J.1
Pradines, J.2
Dolnik, M.3
Collins, J.J.4
-
26
-
-
0035439412
-
An algorithmic introduction to numerical simulation of stochastic differential equations
-
10.1137/S0036144500378302
-
Higham DJ (2001) An algorithmic introduction to numerical simulation of stochastic differential equations. SIAM Rev 43:525-546
-
(2001)
SIAM Rev
, vol.43
, pp. 525-546
-
-
Higham, D.J.1
-
27
-
-
70350778443
-
An epigenetic switch involving NF-kB, Lin28, Let-7 microRNA, and IL6 links inflammation to cell transformation
-
19878981 10.1016/j.cell.2009.10.014 1:CAS:528:DC%2BD1MXhsFylsbbM
-
Iliopoulos D, Hirsch HA, Struhl K (2009) An epigenetic switch involving NF-kB, Lin28, Let-7 microRNA, and IL6 links inflammation to cell transformation. Cell 139:693-706
-
(2009)
Cell
, vol.139
, pp. 693-706
-
-
Iliopoulos, D.1
Hirsch, H.A.2
Struhl, K.3
-
28
-
-
77949875682
-
MicroRNA control of signal transduction
-
20216554 10.1038/nrm2868 1:CAS:528:DC%2BC3cXivFKnsbg%3D
-
Inui M, Martello G, Piccolo S (2010) MicroRNA control of signal transduction. Nat Rev Mol Cell Biol 11:252-263
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 252-263
-
-
Inui, M.1
Martello, G.2
Piccolo, S.3
-
29
-
-
77957664647
-
MicroRNAs as regulators of differentiation and cell fate decisions
-
20621048 10.1016/j.stem.2010.06.012 1:CAS:528:DC%2BC3cXps12ktrs%3D
-
Ivey KN, Srivastava D (2010) MicroRNAs as regulators of differentiation and cell fate decisions. Cell Stem Cell 7:36-41
-
(2010)
Cell Stem Cell
, vol.7
, pp. 36-41
-
-
Ivey, K.N.1
Srivastava, D.2
-
30
-
-
24144437052
-
MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision
-
16099833 10.1073/pnas.0505530102 1:CAS:528:DC%2BD2MXhtVSjsr3L
-
Johnston RJ, Chang S, Etchberger JF, Christopher OO, Hobert O (2005) MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision. Proc Natl Acad Sci USA 102:12449-12454
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12449-12454
-
-
Johnston, R.J.1
Chang, S.2
Etchberger, J.F.3
Christopher, O.O.4
Hobert, O.5
-
31
-
-
70349764482
-
Mir-214-dependent regulation of the polycomb protein Ezh2 in skeletal muscle and embryonic stem cells
-
19818710 10.1016/j.molcel.2009.08.008 1:CAS:528:DC%2BD1MXhsVChtLbP
-
Juan AH, Kumar RM, Marx JG, Young RA, Sartorelli V (2009) Mir-214-dependent regulation of the polycomb protein Ezh2 in skeletal muscle and embryonic stem cells. Mol Cell 36:61-74
-
(2009)
Mol Cell
, vol.36
, pp. 61-74
-
-
Juan, A.H.1
Kumar, R.M.2
Marx, J.G.3
Young, R.A.4
Sartorelli, V.5
-
32
-
-
41349120349
-
Computational modeling of post-transcriptional gene regulation by MicroRNAs
-
18333757 10.1089/cmb.2007.0184 1:CAS:528:DC%2BD1cXjs1alsLs%3D
-
Khanin R, Vinciotti V (2008) Computational modeling of post-transcriptional gene regulation by MicroRNAs. J Comput Biol 15:305-316
-
(2008)
J Comput Biol
, vol.15
, pp. 305-316
-
-
Khanin, R.1
Vinciotti, V.2
-
33
-
-
34548537573
-
A microRNA feedback circuit in midbrain dopamine neurons
-
17761882 10.1126/science.1140481 1:CAS:528:DC%2BD2sXps12ms7Y%3D
-
Kim J et al (2007) A microRNA feedback circuit in midbrain dopamine neurons. Science 317:1220-1224
-
(2007)
Science
, vol.317
, pp. 1220-1224
-
-
Kim, J.1
-
34
-
-
28444469246
-
Silencing of microRNAs in vivo with 'antagomirs'
-
10.1038/nature04303
-
krützfelt J et al. (2005) Silencing of microRNAs in vivo with 'antagomirs'. Nature 438:685-689
-
(2005)
Nature
, vol.438
, pp. 685-689
-
-
Krützfelt, J.1
-
35
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
12399584 10.1126/science.1075090 1:CAS:528:DC%2BD38XotFSntL0%3D
-
Lee TI et al (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298:799-804
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
-
36
-
-
56949096652
-
Small RNAs establish gene expression thresholds
-
18935980 10.1016/j.mib.2008.09.016 1:CAS:528:DC%2BD1cXhsVers7rI
-
Levine E, Hwa T (2008) Small RNAs establish gene expression thresholds. Curr Opin Microbiol 11:574-579
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 574-579
-
-
Levine, E.1
Hwa, T.2
-
37
-
-
34548668642
-
Quantitative characteristics of gene regulation by small RNA
-
17713988 10.1371/journal.pbio.0050229
-
Levine E, Zhang Z, Kuhlman T, Hwa T (2007) Quantitative characteristics of gene regulation by small RNA. PLoS Biol 5:e229
-
(2007)
PLoS Biol
, vol.5
, pp. 229
-
-
Levine, E.1
Zhang, Z.2
Kuhlman, T.3
Hwa, T.4
-
38
-
-
29244437868
-
A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye
-
16377567 10.1016/j.cell.2005.10.040 1:CAS:528:DC%2BD28XktlWitA%3D%3D
-
Li X, Carthew RW (2005) A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye. Cell 123:1267-1277
-
(2005)
Cell
, vol.123
, pp. 1267-1277
-
-
Li, X.1
Carthew, R.W.2
-
39
-
-
40749148105
-
Noise-induced dynamics in the mixed-feedback-loop network motif
-
10.1103/PhysRevE.77.011903
-
Li D, Li C (2008) Noise-induced dynamics in the mixed-feedback-loop network motif. Phys Rev E 77:011903
-
(2008)
Phys Rev e
, vol.77
, pp. 011903
-
-
Li, D.1
Li, C.2
-
40
-
-
33646397850
-
Genetic toggle switch without cooperative binding
-
16712399 10.1103/PhysRevLett.96.188101
-
Lipshtat A, Loinger A, Balaban NQ, Biham O (2006) Genetic toggle switch without cooperative binding. Phys Rev Lett 96:188101
-
(2006)
Phys Rev Lett
, vol.96
, pp. 188101
-
-
Lipshtat, A.1
Loinger, A.2
Balaban, N.Q.3
Biham, O.4
-
41
-
-
79952754267
-
Bistability and oscillations in gene regulation mediated by small noncoding RNAs
-
21437279 10.1371/journal.pone.0017029 1:CAS:528:DC%2BC3MXktVWhsLo%3D
-
Liu D, Chang X, Liu Z, Chen L, Wang R (2011) Bistability and oscillations in gene regulation mediated by small noncoding RNAs. PLoS ONE 6:e17029
-
(2011)
PLoS ONE
, vol.6
, pp. 17029
-
-
Liu, D.1
Chang, X.2
Liu, Z.3
Chen, L.4
Wang, R.5
-
42
-
-
65449151411
-
The interplay between transcription factors and microRNAs in genome-scale regulatory networks
-
19274664 10.1002/bies.200800212 1:CAS:528:DC%2BD1MXltVOrtb4%3D
-
Martinez NJ, Walhout AJM (2009) The interplay between transcription factors and microRNAs in genome-scale regulatory networks. BioEssays 31:435-445
-
(2009)
BioEssays
, vol.31
, pp. 435-445
-
-
Martinez, N.J.1
Walhout, A.J.M.2
-
43
-
-
51949087680
-
A C elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity
-
18794350 10.1101/gad.1678608 1:CAS:528:DC%2BD1cXht1ClsbjE
-
Martinez NJ, Ow MC, Barrasa MI, Hammell M, Sequerra R (2008) A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity. Genes Dev 22:2535-2549
-
(2008)
Genes Dev
, vol.22
, pp. 2535-2549
-
-
Martinez, N.J.1
Ow, M.C.2
Barrasa, M.I.3
Hammell, M.4
Sequerra, R.5
-
44
-
-
54049118804
-
A quantitative comparison of sRNA-based and protein-based gene regulation
-
10.1038/msb.2008.58
-
Mehta P, Goyal S, Wingreen NS (2008) A quantitative comparison of sRNA-based and protein-based gene regulation. Mol Syst Biol 4:211
-
(2008)
Mol Syst Biol
, vol.4
, pp. 211
-
-
Mehta, P.1
Goyal, S.2
Wingreen, N.S.3
-
45
-
-
67649784872
-
Dynamic features of gene expression control by small regulatory RNAs
-
19541626 10.1073/pnas.0901466106 1:CAS:528:DC%2BD1MXos1Smtbc%3D
-
Mitarai N, Benjamin JM, Krishna S, Semsey S, Csiszovzki Z, Massè E, Sneppen K (2009) Dynamic features of gene expression control by small regulatory RNAs. Proc Natl Acad Sci USA 106:10655-10659
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10655-10659
-
-
Mitarai, N.1
Benjamin, J.M.2
Krishna, S.3
Semsey, S.4
Csiszovzki, Z.5
Massè, E.6
Sneppen, K.7
-
46
-
-
79952302623
-
The role of incoherent microRNA-mediated feedforward loops in noise buffering
-
21423718 10.1371/journal.pcbi.1001101 1:CAS:528:DC%2BC3MXjslKlt7w%3D
-
Osella M, Bosia C, Corà D, Caselle M (2011) The role of incoherent microRNA-mediated feedforward loops in noise buffering. PLoS Comput Biol 7:e1001101
-
(2011)
PLoS Comput Biol
, vol.7
, pp. 1001101
-
-
Osella, M.1
Bosia, C.2
Corà, D.3
Caselle, M.4
-
47
-
-
1442354192
-
A multistability in the lactose utilization network of Escherichia coli
-
14973486 10.1038/nature02298 1:CAS:528:DC%2BD2cXhtlajsrw%3D
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, van Oudenaarden (2004) A multistability in the lactose utilization network of Escherichia coli. Nature 427:737-740
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
Van, O.5
-
48
-
-
0345700833
-
Building a cell cycle oscillator: Hysteresis and bistability in the activation of Cdc2
-
12629549 10.1038/ncb954 1:CAS:528:DC%2BD3sXisFWrtLs%3D
-
Pomerening JR, Sontag ED, Ferrell JE (2003) Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2. Nat Cell Biol 5:346-351
-
(2003)
Nat Cell Biol
, vol.5
, pp. 346-351
-
-
Pomerening, J.R.1
Sontag, E.D.2
Ferrell, J.E.3
-
49
-
-
80455164567
-
Epigenetic silencing of the oncogenic miR-17-92 cluster during PU.1-directed macrophage differentiation
-
21897363 10.1038/emboj.2011.317 1:CAS:528:DC%2BC3MXhtFaqs7jL
-
Pospisil V et al (2011) Epigenetic silencing of the oncogenic miR-17-92 cluster during PU.1-directed macrophage differentiation. EMBO J 30:4450-4464
-
(2011)
EMBO J
, vol.30
, pp. 4450-4464
-
-
Pospisil, V.1
-
50
-
-
53549123008
-
Nature, nurture, or chance: Stochastic gene expression and its consequences
-
18957198 10.1016/j.cell.2008.09.050 1:CAS:528:DC%2BD1cXhtlWhsr%2FK
-
Raj A, van Oudenaarden A (2008) Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135:216-226
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
Van Oudenaarden, A.2
-
51
-
-
33748311990
-
Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast
-
16936734 10.1038/ng1869 1:CAS:528:DC%2BD28XovVWjtrY%3D
-
Ramsey SA et al (2006) Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast. Nat Genet 38:1082-1087
-
(2006)
Nat Genet
, vol.38
, pp. 1082-1087
-
-
Ramsey, S.A.1
-
52
-
-
0037078982
-
Control, exploitation and tolerance of intracellular noise
-
12432408 10.1038/nature01258 1:CAS:528:DC%2BD38Xos1GnsbY%3D
-
Rao CV, Wolf DM, Arkin AP (2002) Control, exploitation and tolerance of intracellular noise. Nature 420:231-237
-
(2002)
Nature
, vol.420
, pp. 231-237
-
-
Rao, C.V.1
Wolf, D.M.2
Arkin, A.P.3
-
53
-
-
70349334678
-
Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human
-
19603121 10.1039/b900177h 1:CAS:528:DC%2BD1MXosFWitrg%3D
-
Re A, Cora D, Taverna D, Caselle M (2009) Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human. Mol BioSyst 5:854-867
-
(2009)
Mol BioSyst
, vol.5
, pp. 854-867
-
-
Re, A.1
Cora, D.2
Taverna, D.3
Caselle, M.4
-
54
-
-
0037417803
-
Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts
-
12509509 10.1073/pnas.0235349100 1:CAS:528:DC%2BD3sXhtF2gsLY%3D
-
Sha W, Moore J, Chen K, Lassaletta AD, Yi CS, Tyson JJ, Sible JC (2003) Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts. Proc Natl Acad Sci USA 100:975-980
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 975-980
-
-
Sha, W.1
Moore, J.2
Chen, K.3
Lassaletta, A.D.4
Yi, C.S.5
Tyson, J.J.6
Sible, J.C.7
-
55
-
-
34547555796
-
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
-
17630826 10.1371/journal.pcbi.0030131
-
Shalgi R, Lieber D, Oren M, Pilpel Y (2007) Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PloS Comput Biol 3:e131
-
(2007)
PloS Comput Biol
, vol.3
, pp. 131
-
-
Shalgi, R.1
Lieber, D.2
Oren, M.3
Pilpel, Y.4
-
56
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
11967538 10.1038/ng881 1:CAS:528:DC%2BD38Xjt1Kns70%3D
-
Shen-Orr SS, Milon R, Mangan S, Alon U (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 31:64-68
-
(2002)
Nat Genet
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milon, R.2
Mangan, S.3
Alon, U.4
-
57
-
-
49249103749
-
Firing synchronization and temporal order in noisy neuronal networks
-
19003485 10.1007/s11571-008-9055-z
-
Shi X, Wang Q, Lu Q (2008) Firing synchronization and temporal order in noisy neuronal networks. Cogn Neurodyn 2:195-206
-
(2008)
Cogn Neurodyn
, vol.2
, pp. 195-206
-
-
Shi, X.1
Wang, Q.2
Lu, Q.3
-
58
-
-
34748871477
-
Regulation of gene expression by small non-coding RNAs: A quantitative view
-
17893699 10.1038/msb4100181
-
Shimoni Y, Friedlander G, Hetzroni G, Niv G, Altuvia S, Biham O, Margalit H (2007) Regulation of gene expression by small non-coding RNAs: a quantitative view. Mol Syst Biol 3:138
-
(2007)
Mol Syst Biol
, vol.3
, pp. 138
-
-
Shimoni, Y.1
Friedlander, G.2
Hetzroni, G.3
Niv, G.4
Altuvia, S.5
Biham, O.6
Margalit, H.7
-
59
-
-
39749110083
-
Small non-coding RNAs in animal development
-
18270516 10.1038/nrm2347 1:CAS:528:DC%2BD1cXitlGnurY%3D
-
Stefani G, Slack FJ (2008) Small non-coding RNAs in animal development. Nat Rev Mol Cell Biol 9:219-230
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 219-230
-
-
Stefani, G.1
Slack, F.J.2
-
60
-
-
4544346660
-
Robustness of cellular functions
-
15369668 10.1016/j.cell.2004.09.008 1:CAS:528:DC%2BD2cXnvFehtLc%3D
-
Stelling J, Sauer U, Szallasi Z, Doyle FJ, Doyle J (2004) Robustness of cellular functions. Cell 118:675-685
-
(2004)
Cell
, vol.118
, pp. 675-685
-
-
Stelling, J.1
Sauer, U.2
Szallasi, Z.3
Doyle, F.J.4
Doyle, J.5
-
61
-
-
34249819336
-
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
17560377 10.1016/j.molcel.2007.05.018 1:CAS:528:DC%2BD2sXnt1Cqurs%3D
-
Tsang J, Zhu J, van Oudenaarden A (2007) MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol Cell 26:753-797
-
(2007)
Mol Cell
, vol.26
, pp. 753-797
-
-
Tsang, J.1
Zhu, J.2
Van Oudenaarden, A.3
-
62
-
-
0037376655
-
Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell
-
12648679 10.1016/S0955-0674(03)00017-6 1:CAS:528:DC%2BD3sXitV2msL8%3D
-
Tyson JJ, Chen KC, Novak B (2003) Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr Opin Cell Biol 15:221-231
-
(2003)
Curr Opin Cell Biol
, vol.15
, pp. 221-231
-
-
Tyson, J.J.1
Chen, K.C.2
Novak, B.3
-
63
-
-
33644768174
-
Control of translation and mRNA degradation by miRNAs and siRNAs
-
16510870 10.1101/gad.1399806 1:CAS:528:DC%2BD28Xit1KmtLY%3D
-
Valencia-Sanchez MA, Liu J, Hannon GJ, Parker R (2006) Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev 20:515-524
-
(2006)
Genes Dev
, vol.20
, pp. 515-524
-
-
Valencia-Sanchez, M.A.1
Liu, J.2
Hannon, G.J.3
Parker, R.4
-
64
-
-
0037197850
-
Mechanisms of noise-resistance in genetic oscillators
-
11972055 10.1073/pnas.092133899 1:CAS:528:DC%2BD38XjslWgurs%3D
-
Vilar JMG, Kueh HY, Barkai N, Leibler S (2002) Mechanisms of noise-resistance in genetic oscillators. Proc Natl Acad Sci USA 99:5988-5992
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5988-5992
-
-
Vilar, J.M.G.1
Kueh, H.Y.2
Barkai, N.3
Leibler, S.4
-
65
-
-
34147157651
-
The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development
-
17403776 10.1101/gad.1519107 1:CAS:528:DC%2BD2sXktFGgs78%3D
-
Visvanathan J, Lee S, Lee B, Lee JW, Lee S-K (2007) The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development. Genes Dev 21:744-749
-
(2007)
Genes Dev
, vol.21
, pp. 744-749
-
-
Visvanathan, J.1
Lee, S.2
Lee, B.3
Lee, J.W.4
Lee, S.-K.5
-
66
-
-
80052660060
-
Quantifying negative feedback regulation by microRNAs
-
21832809 10.1088/1478-3975/8/5/055002
-
Wang S, Raghavachari S (2011) Quantifying negative feedback regulation by microRNAs. Phys Biol 8:055002
-
(2011)
Phys Biol
, vol.8
, pp. 055002
-
-
Wang, S.1
Raghavachari, S.2
-
67
-
-
38749133407
-
Noise-induced switches in network systems of the genetic toggle switch
-
18005421 10.1186/1752-0509-1-50
-
Wang J, Zhang J, Yuan Z, Zhou T (2007) Noise-induced switches in network systems of the genetic toggle switch. BMC Syst Biol 1:50
-
(2007)
BMC Syst Biol
, vol.1
, pp. 50
-
-
Wang, J.1
Zhang, J.2
Yuan, Z.3
Zhou, T.4
-
68
-
-
47949118191
-
Modeling and analyzing biological oscillations in molecular networks
-
10.1109/JPROC.2008.925448
-
Wang R, Li C, Chen L, Aihara K (2008) Modeling and analyzing biological oscillations in molecular networks. Proc IEEE 96:1361-1385
-
(2008)
Proc IEEE
, vol.96
, pp. 1361-1385
-
-
Wang, R.1
Li, C.2
Chen, L.3
Aihara, K.4
-
69
-
-
69049086492
-
Robust stability of stochastic delayed genetic regulatory networks
-
19642023 10.1007/s11571-009-9077-1
-
Wang Z, Liu G, Sun Y, Wu H (2009) Robust stability of stochastic delayed genetic regulatory networks. Cogn Neurodyn 3:271-280
-
(2009)
Cogn Neurodyn
, vol.3
, pp. 271-280
-
-
Wang, Z.1
Liu, G.2
Sun, Y.3
Wu, H.4
-
70
-
-
84872107081
-
Mean square stability of uncertain stochastic BAM neural networks with interval time-varying delays
-
10.1007/s11571-012-9200-6
-
Wu H, Liao X, Feng W, Guo S (2012) Mean square stability of uncertain stochastic BAM neural networks with interval time-varying delays. Cogn Neurodyn 6:443-458
-
(2012)
Cogn Neurodyn
, vol.6
, pp. 443-458
-
-
Wu, H.1
Liao, X.2
Feng, W.3
Guo, S.4
-
71
-
-
0141484611
-
Evolutionary conservation of motif constituents in the yeast protein interaction network
-
12973352 10.1038/ng1242 1:CAS:528:DC%2BD3sXns1WgtLw%3D
-
Wuchty S, Oltvai ZN, Barabási AL (2003) Evolutionary conservation of motif constituents in the yeast protein interaction network. Nat Genet 35:176-179
-
(2003)
Nat Genet
, vol.35
, pp. 176-179
-
-
Wuchty, S.1
Oltvai, Z.N.2
Barabási, A.L.3
-
72
-
-
0345359924
-
A positive-feedback-based bistable 'memory module' that governs a cell fate decision
-
14647386 10.1038/nature02089 1:CAS:528:DC%2BD3sXpt1Gls7o%3D
-
Xiong W, Ferrell JE (2003) A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature 426:460-465
-
(2003)
Nature
, vol.426
, pp. 460-465
-
-
Xiong, W.1
Ferrell, J.E.2
-
73
-
-
67349149082
-
MicroRNA-145 regulates OCT4, SOX2,and KLF4 and represses pluripotency in human embryonic stem cells
-
19409607 10.1016/j.cell.2009.02.038 1:CAS:528:DC%2BD1MXosVCltrY%3D
-
Xu D, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS (2009) MicroRNA-145 regulates OCT4, SOX2,and KLF4 and represses pluripotency in human embryonic stem cells. Cell 137:647-658
-
(2009)
Cell
, vol.137
, pp. 647-658
-
-
Xu, D.1
Papagiannakopoulos, T.2
Pan, G.3
Thomson, J.A.4
Kosik, K.S.5
-
74
-
-
0344011136
-
Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation
-
14530453 10.1093/nar/gkg787 1:CAS:528:DC%2BD3sXotVClsbk%3D
-
Yeger-Lotem E, Margalit H (2003) Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation. Nucleic Acids Res 31:6053-6061
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6053-6061
-
-
Yeger-Lotem, E.1
Margalit, H.2
-
75
-
-
1942469444
-
Network motifs in integrated cellular networks of transcription- regulation and protein- protein interaction
-
15079056 10.1073/pnas.0306752101 1:CAS:528:DC%2BD2cXjsFKns7Y%3D
-
Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, Pinter RY, Alon U, Margalit H (2004) Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proc Natl Acad Sci USA 101:5934-5939
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5934-5939
-
-
Yeger-Lotem, E.1
Sattath, S.2
Kashtan, N.3
Itzkovitz, S.4
Milo, R.5
Pinter, R.Y.6
Alon, U.7
Margalit, H.8
-
76
-
-
56649099271
-
Analysis of regulatory network topology reveals functionally distinct classes of microRNAs
-
18927108 10.1093/nar/gkn712 1:CAS:528:DC%2BD1cXhtl2hu73N
-
Yu X, Lin J, Zack DJ, Mendell JT, Qian J (2008) Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. Nucleic Acids Res 36:6494-6503
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6494-6503
-
-
Yu, X.1
Lin, J.2
Zack, D.J.3
Mendell, J.T.4
Qian, J.5
-
77
-
-
34848860189
-
Linking fast and slow positive feedback loops creates an optimal bistable switch in cell signaling
-
10.1103/PhysRevE.76.031924
-
Zhang XP, Zhang C, Liu F, Wang W (2007) Linking fast and slow positive feedback loops creates an optimal bistable switch in cell signaling. Phys Rev E 76:031924
-
(2007)
Phys Rev e
, vol.76
, pp. 031924
-
-
Zhang, X.P.1
Zhang, C.2
Liu, F.3
Wang, W.4
-
78
-
-
64049095014
-
A feedback regulatory loop involving microRNA-9 and nuclear receptor TLX in neural stem cell fate determination
-
19330006 10.1038/nsmb.1576 1:CAS:528:DC%2BD1MXjslart70%3D
-
Zhao C, Sun G, Li S, Shi Y (2009) A feedback regulatory loop involving microRNA-9 and nuclear receptor TLX in neural stem cell fate determination. Nat Struct Mol Biol 16:365-371
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 365-371
-
-
Zhao, C.1
Sun, G.2
Li, S.3
Shi, Y.4
-
79
-
-
56949102344
-
Bistability in gene transcription: Interplay of messenger RNA, protein, and nonprotein coding RNA
-
18703113 10.1016/j.biosystems.2008.07.002 1:CAS:528:DC%2BD1cXhsVertrvN
-
Zhdanov VP (2009) Bistability in gene transcription: interplay of messenger RNA, protein, and nonprotein coding RNA. BioSystems 95:75-81
-
(2009)
BioSystems
, vol.95
, pp. 75-81
-
-
Zhdanov, V.P.1
|