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Volumn 36, Issue 20, 2008, Pages 6494-6503

Analysis of regulatory network topology reveals functionally distinct classes of microRNAs

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

EID: 56649099271     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn712     Document Type: Article
Times cited : (74)

References (41)
  • 2
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros,V. (2004) The functions of animal microRNAs. Nature, 431 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 3
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel,D.P. (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 24144437052 scopus 로고    scopus 로고
    • MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision
    • Johnston,R.J. Jr, Chang,S., Etchberger,J.F., Ortiz,C.O. and Hobert,O. (2005) MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision. Proc. Natl Acad. Sci. USA, 102, 12449-12454.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 12449-12454
    • Johnston Jr, R.J.1    Chang, S.2    Etchberger, J.F.3    Ortiz, C.O.4    Hobert, O.5
  • 5
    • 0347357618 scopus 로고    scopus 로고
    • A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans
    • Johnston,R.J. and Hobert,O. (2003) A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans. Nature, 426, 845-849.
    • (2003) Nature , vol.426 , pp. 845-849
    • Johnston, R.J.1    Hobert, O.2
  • 6
    • 29244437868 scopus 로고    scopus 로고
    • A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye
    • Li,X. and Carthew,R.W. (2005) A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye. Cell, 123, 1267-1277.
    • (2005) Cell , vol.123 , pp. 1267-1277
    • Li, X.1    Carthew, R.W.2
  • 10
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr,S.S., Milo,R., Mangan,S. and Alon,U. (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet., 31, 64-68.
    • (2002) Nat. Genet , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 12
    • 32044462728 scopus 로고    scopus 로고
    • The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli
    • Mangan,S., Itzkovitz,S., Zaslaver,A. and Alon,U. (2006) The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. J. Mol. Biol., 356, 1073-1081.
    • (2006) J. Mol. Biol , vol.356 , pp. 1073-1081
    • Mangan, S.1    Itzkovitz, S.2    Zaslaver, A.3    Alon, U.4
  • 13
    • 34249819336 scopus 로고    scopus 로고
    • MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
    • Tsang,J., Zhu,J. and van Oudenaarden,A. (2007) MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol. Cell, 26, 753-767.
    • (2007) Mol. Cell , vol.26 , pp. 753-767
    • Tsang, J.1    Zhu, J.2    van Oudenaarden, A.3
  • 14
    • 34547555796 scopus 로고    scopus 로고
    • Global and local architecture of the mammalian microRNA-transcription factor regulatory network
    • Shalgi,R., Lieber,D., Oren,M. and Pilpel,Y. (2007) Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput. Biol., 3, e131.
    • (2007) PLoS Comput. Biol , vol.3
    • Shalgi, R.1    Lieber, D.2    Oren, M.3    Pilpel, Y.4
  • 16
    • 33846045953 scopus 로고    scopus 로고
    • Principles of microRNA regulation of a human cellular signaling network
    • Cui,Q., Yu,Z., Purisima,E.O. and Wang,E. (2006) Principles of microRNA regulation of a human cellular signaling network. Mol. Syst. Biol. 2, 46.
    • (2006) Mol. Syst. Biol , vol.2 , pp. 46
    • Cui, Q.1    Yu, Z.2    Purisima, E.O.3    Wang, E.4
  • 18
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling,R., Armengaud,P., Amtmann,A. and Herzyk,P. (2004) Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett., 573, 83-92.
    • (2004) FEBS Lett , vol.573 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 19
    • 0001677717 scopus 로고
    • Controlling the false discovery Rate: A practical and powerful approach to multiple testing
    • Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery Rate: A practical and powerful approach to multiple testing. J.R. Stat. Soc. Ser. B, 57, 289-300.
    • (1995) J.R. Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 21
    • 20944450160 scopus 로고    scopus 로고
    • Krek,A., Grun,D., Poy,M.N., Wolf,R., Rosenberg,L., Epstein,E.J., MacMenamin,P., da Piedade,I., Gunsalus,K.C., Sto.el,M. et al. (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
    • Krek,A., Grun,D., Poy,M.N., Wolf,R., Rosenberg,L., Epstein,E.J., MacMenamin,P., da Piedade,I., Gunsalus,K.C., Sto.el,M. et al. (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
  • 23
    • 26444591973 scopus 로고    scopus 로고
    • Genomic regulatory networks and animal development
    • Stathopoulos,A. and Levine,M. (2005) Genomic regulatory networks and animal development. Dev. Cell, 9, 449-462.
    • (2005) Dev. Cell , vol.9 , pp. 449-462
    • Stathopoulos, A.1    Levine, M.2
  • 24
    • 33751073710 scopus 로고    scopus 로고
    • Denoising feedback loops by thresholding-a new role for microRNAs
    • Cohen,S.M., Brennecke,J. and Stark,A. (2006) Denoising feedback loops by thresholding-a new role for microRNAs. Genes Dev., 20, 2769-2772.
    • (2006) Genes Dev , vol.20 , pp. 2769-2772
    • Cohen, S.M.1    Brennecke, J.2    Stark, A.3
  • 25
    • 84984765621 scopus 로고    scopus 로고
    • Canalization of development by microRNAs
    • Hornstein,E. and Shomron,N. (2006) Canalization of development by microRNAs. Nat. Genet., 38(Suppl), S20-S24.
    • (2006) Nat. Genet , vol.38 , Issue.SUPPL.
    • Hornstein, E.1    Shomron, N.2
  • 26
    • 29144438977 scopus 로고    scopus 로고
    • The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings
    • Ronshaugen,M., Biemar,F., Piel,J., Levine,M. and Lai,E.C. (2005) The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings. Genes Dev., 19, 2947-2952.
    • (2005) Genes Dev , vol.19 , pp. 2947-2952
    • Ronshaugen, M.1    Biemar, F.2    Piel, J.3    Levine, M.4    Lai, E.C.5
  • 27
    • 25844460031 scopus 로고    scopus 로고
    • Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth
    • Sokol,N.S. and Ambros,V. (2005) Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth. Genes Dev., 19, 2343-2354.
    • (2005) Genes Dev , vol.19 , pp. 2343-2354
    • Sokol, N.S.1    Ambros, V.2
  • 28
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: The potentially widespread in.uence of metazoan microRNAs
    • Bartel,D.P. and Chen,C.Z. (2004) Micromanagers of gene expression: The potentially widespread in.uence of metazoan microRNAs. Nat. Rev. Genet., 5, 396-400.
    • (2004) Nat. Rev. Genet , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 30
    • 10744226888 scopus 로고    scopus 로고
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
    • Cawley,S., Bekiranov,S., Ng,H.H., Kapranov,P., Sekinger,E.A., Kampa,D., Piccolboni,A., Sementchenko,V., Cheng,J., Williams,A.J. et al. (2004) Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell, 116, 499-509.
    • (2004) Cell , vol.116 , pp. 499-509
    • Cawley, S.1    Bekiranov, S.2    Ng, H.H.3    Kapranov, P.4    Sekinger, E.A.5    Kampa, D.6    Piccolboni, A.7    Sementchenko, V.8    Cheng, J.9    Williams, A.J.10
  • 31
    • 33144481470 scopus 로고    scopus 로고
    • Reciprocal actions of REST and a microRNA promote neuronal identity
    • Conaco,C., Otto,S., Han,J.J. and Mandel,G. (2006) Reciprocal actions of REST and a microRNA promote neuronal identity. Proc. Natl Acad. Sci. USA, 103, 2422-2427.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 2422-2427
    • Conaco, C.1    Otto, S.2    Han, J.J.3    Mandel, G.4
  • 35
    • 33745456986 scopus 로고    scopus 로고
    • Odom,D.T., Dowell,R.D., Jacobsen,E.S., Nekludova,L., Rolfe,P.A., Danford,T.W., Gi.ord,D.K., Fraenkel,E., Bell,G.I. and Young,R.A. (2006) Core transcriptional regulatory circuitry in human hepatocytes. Mol. Syst. Biol., 2, 2006 0017.
    • Odom,D.T., Dowell,R.D., Jacobsen,E.S., Nekludova,L., Rolfe,P.A., Danford,T.W., Gi.ord,D.K., Fraenkel,E., Bell,G.I. and Young,R.A. (2006) Core transcriptional regulatory circuitry in human hepatocytes. Mol. Syst. Biol., 2, 2006 0017.
  • 37
    • 33750217984 scopus 로고    scopus 로고
    • Computational analysis of tissue-specific combinatorial gene regulation: Predicting interaction between transcription factors in human tissues
    • Yu,X., Lin,J., Zack,D.J. and Qian,J. (2006) Computational analysis of tissue-specific combinatorial gene regulation: Predicting interaction between transcription factors in human tissues. Nucleic Acids Res. 34, 4925-4936.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4925-4936
    • Yu, X.1    Lin, J.2    Zack, D.J.3    Qian, J.4
  • 40
    • 13944262052 scopus 로고    scopus 로고
    • A custom microarray platform for analysis of microRNA gene expression
    • Thomson,J.M., Parker,J., Perou,C.M. and Hammond,S.M. (2004) A custom microarray platform for analysis of microRNA gene expression. Nat. Methods, 1, 47-53.
    • (2004) Nat. Methods , vol.1 , pp. 47-53
    • Thomson, J.M.1    Parker, J.2    Perou, C.M.3    Hammond, S.M.4
  • 41
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville,S. and Bartel,D.P. (2005) Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA, 11, 241-247.
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.