-
1
-
-
0038724989
-
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
-
Cliften, P., Sudarsanam, P., Desikan, A., Fulton, L., Fulton, B., Majors, J., Waterston, R., Cohen, B.A., and Johnston, M. 2003. Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301: 71-76.
-
(2003)
Science
, vol.301
, pp. 71-76
-
-
Cliften, P.1
Sudarsanam, P.2
Desikan, A.3
Fulton, L.4
Fulton, B.5
Majors, J.6
Waterston, R.7
Cohen, B.A.8
Johnston, M.9
-
2
-
-
11144355642
-
The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome
-
Dietrich, F.S., Voegeli, S., Brachat, S., Lerch, A., Gates, K., Steiner, S., Mohr, C., Pohlmann, R., Luedi, P., Choi, S., et al. 2004. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science 304: 304-307.
-
(2004)
Science
, vol.304
, pp. 304-307
-
-
Dietrich, F.S.1
Voegeli, S.2
Brachat, S.3
Lerch, A.4
Gates, K.5
Steiner, S.6
Mohr, C.7
Pohlmann, R.8
Luedi, P.9
Choi, S.10
-
3
-
-
3042720475
-
Genome evolution in yeasts
-
Dujon, B., Sherman, D., Fischer, G., Durrens, P., Casaregola, S., Lafontaine, I., De Montigny, J., Marck, C., Neuveglise, C., Talla, E., et al. 2004. Genome evolution in yeasts. Nature 430: 35-44.
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregola, S.5
Lafontaine, I.6
De Montigny, J.7
Marck, C.8
Neuveglise, C.9
Talla, E.10
-
4
-
-
0035215378
-
Evolution of gene order in the genomes of two related yeast species
-
Fischer, G., Neuveglise, C., Durrens, P., Gaillardin, C., and Dujon, B. 2001. Evolution of gene order in the genomes of two related yeast species. Genome Res. 11: 2009-2019.
-
(2001)
Genome Res.
, vol.11
, pp. 2009-2019
-
-
Fischer, G.1
Neuveglise, C.2
Durrens, P.3
Gaillardin, C.4
Dujon, B.5
-
5
-
-
8844244033
-
Very low gene duplication rate in the yeast genome
-
Gao, L.Z. and Innan, H. 2004. Very low gene duplication rate in the yeast genome. Science 306: 1367-1370.
-
(2004)
Science
, vol.306
, pp. 1367-1370
-
-
Gao, L.Z.1
Innan, H.2
-
6
-
-
10244239321
-
Life with 6000 genes
-
Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., et al. 1996. Life with 6000 genes. Science 274: 546, 563-567.
-
(1996)
Science
, vol.274
, pp. 546
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
-
7
-
-
12844285611
-
Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
-
Gu, Z., David, L., Petrov, D., Jones, T., Davis, R.W., and Steinmetz, L.M. 2005. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. 102: 1092-1097.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 1092-1097
-
-
Gu, Z.1
David, L.2
Petrov, D.3
Jones, T.4
Davis, R.W.5
Steinmetz, L.M.6
-
8
-
-
4644304792
-
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
-
Hittinger, C.T., Rokas, A., and Carroll, S.B. 2004. Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proc. Natl. Acad. Sci. 101: 14144-14149.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 14144-14149
-
-
Hittinger, C.T.1
Rokas, A.2
Carroll, S.B.3
-
9
-
-
2442629464
-
The diploid genome sequence of Candida albicans
-
Jones, T., Federspiel, N.A., Chibana, H., Dungan, J., Kalman, S., Magee, B.B., Newport, G., Thorstenson, Y.R., Agabian, N., Magee, P.T., et al. 2004. The diploid genome sequence of Candida albicans. Proc. Natl. Acad. Sci. 101: 7329-7334.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 7329-7334
-
-
Jones, T.1
Federspiel, N.A.2
Chibana, H.3
Dungan, J.4
Kalman, S.5
Magee, B.B.6
Newport, G.7
Thorstenson, Y.R.8
Agabian, N.9
Magee, P.T.10
-
10
-
-
0036241339
-
Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
-
Kashkush, K., Feldman, M., and Levy, A.A. 2002. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160: 1651-1659.
-
(2002)
Genetics
, vol.160
, pp. 1651-1659
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
11
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
Kellis, M., Patterson, N., Endrizzi, M., Birren, B., and Lander, E.S. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
12
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
Kellis, M., Birren, B.W., and Lander, E.S. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617-624.
-
(2004)
Nature
, vol.428
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
13
-
-
0032579778
-
Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi
-
Keogh, R.S., Seoighe, C., and Wolfe, K.H. 1998. Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi. Yeast 14: 443-457.
-
(1998)
Yeast
, vol.14
, pp. 443-457
-
-
Keogh, R.S.1
Seoighe, C.2
Wolfe, K.H.3
-
14
-
-
0037540048
-
Phylogenetic relationships among yeasts of the "Saccharomyces complex" determined from multigene sequence analyses
-
Kurtzman, C.P. and Robnett, C.J. 2003. Phylogenetic relationships among yeasts of the "Saccharomyces complex" determined from multigene sequence analyses. FEMS Yeast Res. 3: 417-432.
-
(2003)
FEMS Yeast Res.
, vol.3
, pp. 417-432
-
-
Kurtzman, C.P.1
Robnett, C.J.2
-
15
-
-
0034704325
-
Genomic exploration of the hemiascomycetous yeasts, 18: Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae
-
Llorente, B., Malpertuy, A., Neuveglise, C., de Montigny, J., Aigle, M., Artiguenave, F., Blandin, G., Bolotin-Fukuhara, M., Bon, E., Brottier, P., et al. 2000. Genomic exploration of the hemiascomycetous yeasts, 18: Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae. FEBS Lett. 487: 101-112.
-
(2000)
FEBS Lett.
, vol.487
, pp. 101-112
-
-
Llorente, B.1
Malpertuy, A.2
Neuveglise, C.3
De Montigny, J.4
Aigle, M.5
Artiguenave, F.6
Blandin, G.7
Bolotin-Fukuhara, M.8
Bon, E.9
Brottier, P.10
-
16
-
-
0027284770
-
Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse
-
Lundin, L.G. 1993. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics 16: 1-19.
-
(1993)
Genomics
, vol.16
, pp. 1-19
-
-
Lundin, L.G.1
-
17
-
-
0030716471
-
Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
-
Nadeau, J.H. and Sankoff, D. 1997. Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. Genetics 147: 1259-1266.
-
(1997)
Genetics
, vol.147
, pp. 1259-1266
-
-
Nadeau, J.H.1
Sankoff, D.2
-
19
-
-
3042836334
-
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
-
Paterson, A.H., Bowers, J.E., and Chapman, B.A. 2004. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc. Natl. Acad. Sci. 101: 9903-9908.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 9903-9908
-
-
Paterson, A.H.1
Bowers, J.E.2
Chapman, B.A.3
-
20
-
-
0032879798
-
Yeast genome evolution in the post-genome era
-
Seoighe, C. and Wolfe, K.H. 1999. Yeast genome evolution in the post-genome era. Curr. Opin. Microbiol. 2: 548-554.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 548-554
-
-
Seoighe, C.1
Wolfe, K.H.2
-
21
-
-
0347090332
-
Genolevures: Comparative genomics and molecular evolution of hemiascomycetous yeasts
-
Sherman, D., Durrens, P., Beyne, E., Nikolski, M., and Souciet, J.L. 2004. Genolevures: Comparative genomics and molecular evolution of hemiascomycetous yeasts. Nucleic Acids Res. 32: D315-318.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sherman, D.1
Durrens, P.2
Beyne, E.3
Nikolski, M.4
Souciet, J.L.5
-
22
-
-
0034704310
-
Genomic exploration of the hemiascomycetous yeasts, 1: A set of yeast species for molecular evolution studies
-
Souciet, J., Aigle, M., Artiguenave, F., Blandin, G., Bolotin-Fukuhara, M., Bon, E., Brottier, P., Casaregola, S., de Montigny, J., Dujon, B. et al. 2000. Genomic exploration of the hemiascomycetous yeasts, 1: A set of yeast species for molecular evolution studies. FEBS Lett. 487: 3-12.
-
(2000)
FEBS Lett.
, vol.487
, pp. 3-12
-
-
Souciet, J.1
Aigle, M.2
Artiguenave, F.3
Blandin, G.4
Bolotin-Fukuhara, M.5
Bon, E.6
Brottier, P.7
Casaregola, S.8
De Montigny, J.9
Dujon, B.10
-
23
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein, L.D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A., Nickerson, E., Stajich, J.E., Harris, T.W., Arva, A., et al. 2002. The generic genome browser: A building block for a model organism system database. Genome Res. 12: 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
-
24
-
-
0034020782
-
Robustness: It's not where you think it is
-
Wolfe, K. 2000. Robustness: It's not where you think it is. Nat. Genet. 25: 3-4.
-
(2000)
Nat. Genet.
, vol.25
, pp. 3-4
-
-
Wolfe, K.1
-
25
-
-
3042695524
-
Evolutionary genomics: Yeasts accelerate beyond BLAST
-
_. 2004. Evolutionary genomics: Yeasts accelerate beyond BLAST. Curr. Biol. 14: R392-R394.
-
(2004)
Curr. Biol.
, vol.14
-
-
-
26
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe, K.H. and Shields, D.C. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
27
-
-
0037047141
-
Gene order evolution and paleopolyploidy in hemiascomycete yeasts
-
Wong, S., Butler, G., and Wolfe, K.H. 2002. Gene order evolution and paleopolyploidy in hemiascomycete yeasts. Proc. Natl. Acad. Sci. 99: 9272-9277.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 9272-9277
-
-
Wong, S.1
Butler, G.2
Wolfe, K.H.3
-
28
-
-
0030995534
-
A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae
-
Wotton, D. and Shore, D. 1997. A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae. Genes & Dev. 11: 748-760.
-
(1997)
Genes & Dev.
, vol.11
, pp. 748-760
-
-
Wotton, D.1
Shore, D.2
-
29
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang, Z. and Nielsen, R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17: 32-43.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
30
-
-
25844434582
-
-
Yeast Gene Order Browser (YGOB)
-
http://wolfe.gen.tcd.ie/ygob; Yeast Gene Order Browser (YGOB)
-
-
-
|