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Volumn 186, Issue 3, 2010, Pages 791-799

Lambda red recombineering in Escherichia coli occurs through a fully single-stranded intermediate

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; EXONUCLEASE; PHOSPHOROTHIOIC ACID; RECOMBINASE; SINGLE STRANDED DNA;

EID: 78951480559     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.120782     Document Type: Article
Times cited : (151)

References (38)
  • 1
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: The Keio collection
    • BABA, T., T. ARA, M. HASEGAWA, Y. TAKAI, Y. OKUMURA et al., 2006 Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Mol. Syst. Biol. 2: 2006.0008.
    • (2006) Mol. Syst. Biol. , vol.2
    • Baba, T.1    Ara, T.2    Hasegawa, M.3    Takai, Y.4    Okumura, Y.5
  • 2
    • 59649119606 scopus 로고    scopus 로고
    • Recombineering-based procedure for creating Cre/loxP conditional knockouts in the mouse
    • BOUVIER, J., and J. G. CHENG, 2009 Recombineering-based procedure for creating Cre/loxP conditional knockouts in the mouse. Curr. Protoc. Mol. Biol. 85:23.13.1-23.13.27.
    • (2009) Curr. Protoc. Mol. Biol. , vol.85
    • Bouvier, J.1    Cheng, J.G.2
  • 3
    • 0034668869 scopus 로고    scopus 로고
    • A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans
    • CHAVEROCHE, M. K., J. M. GHIGO and C. D'ENFERT, 2000 A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans. Nucleic Acids Res. 28: E97.
    • (2000) Nucleic Acids Res. , vol.28
    • Chaveroche, M.K.1    Ghigo, J.M.2    D'Enfert, C.3
  • 4
    • 0346103663 scopus 로고    scopus 로고
    • Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants
    • COSTANTINO, N., and D. L. COURT, 2003 Enhanced levels of lambda Red-mediated recombinants in mismatch repair mutants. Proc. Natl. Acad. Sci. USA 100: 15748-15753.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15748-15753
    • Costantino, N.1    Court, D.L.2
  • 5
    • 0036953835 scopus 로고    scopus 로고
    • Genetic engineering using homologous recombination
    • COURT, D. L., J. A. SAWITZKE and L. C. THOMASON, 2002 Genetic engineering using homologous recombination. Annu. Rev. Genet. 36: 361-388.
    • (2002) Annu. Rev. Genet. , vol.36 , pp. 361-388
    • Court, D.L.1    Sawitzke, J.A.2    Thomason, L.C.3
  • 6
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • DATSENKO, K. A., and B. L. WANNER, 2000 One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97: 6640-6645.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 7
    • 40349101854 scopus 로고    scopus 로고
    • Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages
    • DATTA, S., N. COSTANTINO, X. ZHOU and D. L. COURT, 2008 Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages. Proc. Natl. Acad. Sci. USA 105: 1626-1631.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 1626-1631
    • Datta, S.1    Costantino, N.2    Zhou, X.3    Court, D.L.4
  • 8
    • 0035810938 scopus 로고    scopus 로고
    • High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides
    • ELLIS, H. M., D. YU, T. DITIZIO and D. L. COURT, 2001 High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proc. Natl. Acad. Sci. USA 98: 6742-6746.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 6742-6746
    • Ellis, H.M.1    Yu, D.2    Ditizio, T.3    Court, D.L.4
  • 9
    • 0031006470 scopus 로고    scopus 로고
    • Single-strand DNA intermediates in phage lambda's Red recombination pathway
    • HILL, S. A., M. M. STAHL and F. W. STAHL, 1997 Single-strand DNA intermediates in phage lambda's Red recombination pathway. Proc. Natl. Acad. Sci. USA 94: 2951-2956.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 2951-2956
    • Hill, S.A.1    Stahl, M.M.2    Stahl, F.W.3
  • 10
    • 0035308590 scopus 로고    scopus 로고
    • A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA
    • LEE, E. C., D. YU, J. MARTINEZ DE VELASCO, L. TESSAROLLO, D. A. SWING et al., 2001 A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA. Genomics 73: 56-65.
    • (2001) Genomics , vol.73 , pp. 56-65
    • Lee, E.C.1    Yu, D.2    Martinez De Velasco, J.3    Tessarollo, L.4    Swing, D.A.5
  • 11
    • 15044348273 scopus 로고    scopus 로고
    • MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules
    • LI, M. Z., and S. J. ELLEDGE, 2005 MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules. Nat. Genet. 37: 311-319.
    • (2005) Nat. Genet. , vol.37 , pp. 311-319
    • Li, M.Z.1    Elledge, S.J.2
  • 12
    • 0344668833 scopus 로고    scopus 로고
    • Identification of factors influencing strand bias in oligonucleotide- mediated recombination in Escherichia coli
    • LI, X. T., N. COSTANTINO, L. Y. LU, D. P. LIU, R. M. WATT et al., 2003 Identification of factors influencing strand bias in oligonucleotide-mediated recombination in Escherichia coli. Nucleic Acids Res. 31: 6674-6687.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 6674-6687
    • Li, X.T.1    Costantino, N.2    Lu, L.Y.3    Liu, D.P.4    Watt, R.M.5
  • 13
    • 56949084194 scopus 로고    scopus 로고
    • Lagging strand-biased initiation of red recombination by linear double-stranded DNAs
    • LIM, S. I., B. E. MIN and G. Y. JUNG, 2008 Lagging strand-biased initiation of red recombination by linear double-stranded DNAs. J. Mol. Biol. 384: 1098-1105.
    • (2008) J. Mol. Biol. , vol.384 , pp. 1098-1105
    • Lim, S.I.1    Min, B.E.2    Jung, G.Y.3
  • 14
    • 77951574871 scopus 로고    scopus 로고
    • The terminal 5′ phosphate and proximate phosphorothioate promote ligation-independent cloning
    • LIU, X. P., and J. H. LIU, 2010 The terminal 5′ phosphate and proximate phosphorothioate promote ligation-independent cloning. Protein Sci. 19: 967-973.
    • (2010) Protein Sci. , vol.19 , pp. 967-973
    • Liu, X.P.1    Liu, J.H.2
  • 15
    • 77955488715 scopus 로고    scopus 로고
    • Single-stranded heteroduplex intermediates in lambda Red homologous recombination
    • MARESCA, M., A. ERLER, J. FU, A. FRIEDRICH, Y. ZHANG et al., 2010 Single-stranded heteroduplex intermediates in lambda Red homologous recombination. BMC Mol. Biol. 11: 54.
    • (2010) BMC Mol. Biol. , vol.11 , pp. 54
    • Maresca, M.1    Erler, A.2    Fu, J.3    Friedrich, A.4    Zhang, Y.5
  • 16
    • 0031924072 scopus 로고    scopus 로고
    • Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli
    • MURPHY, K. C., 1998 Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli. J. Bacteriol. 180: 2063-2071.
    • (1998) J. Bacteriol. , vol.180 , pp. 2063-2071
    • Murphy, K.C.1
  • 17
    • 0034603783 scopus 로고    scopus 로고
    • PCR-mediated gene replacement in Escherichia coli
    • MURPHY, K. C., K. G. CAMPELLONE and A. R. POTEETE, 2000 PCR-mediated gene replacement in Escherichia coli. Gene 246: 321-330.
    • (2000) Gene , vol.246 , pp. 321-330
    • Murphy, K.C.1    Campellone, K.G.2    Poteete, A.R.3
  • 18
    • 0033624563 scopus 로고    scopus 로고
    • RecE/RecT and Redalpha/Redbeta initiate double-stranded break repair by specifically interacting with their respective partners
    • MUYRERS, J. P., Y. ZHANG, F. BUCHHOLZ and A. F. STEWART, 2000 RecE/RecT and Redalpha/Redbeta initiate double-stranded break repair by specifically interacting with their respective partners. Genes Dev. 14: 1971-1982.
    • (2000) Genes Dev. , vol.14 , pp. 1971-1982
    • Muyrers, J.P.1    Zhang, Y.2    Buchholz, F.3    Stewart, A.F.4
  • 19
    • 33646722147 scopus 로고    scopus 로고
    • Emergent properties of reduced-genome Escherichia coli
    • POSFAI, G., G. PLUNKETT, 3RD, T. FEHER, D. FRISCH, G. M. KEIL et al., 2006 Emergent properties of reduced-genome Escherichia coli. Science 312: 1044-1046.
    • (2006) Science , vol.312 , pp. 1044-1046
    • Posfai, G.1    Plunkett III, G.2    Feher, T.3    Frisch, D.4    Keil, G.M.5
  • 20
    • 40549083336 scopus 로고    scopus 로고
    • Involvement of DNA replication in phage lambda Red-mediated homologous recombination
    • POTEETE, A. R., 2008 Involvement of DNA replication in phage lambda Red-mediated homologous recombination. Mol. Microbiol. 68: 66-74.
    • (2008) Mol. Microbiol. , vol.68 , pp. 66-74
    • Poteete, A.R.1
  • 21
    • 71949090672 scopus 로고    scopus 로고
    • Polymerase chain reaction based scaffold preparation for the production of thin, branched DNA origami nanostructures of arbitrary sizes
    • POUND, E., J. R. ASHTON, H. A. BECERRIL and A. T. WOOLLEY, 2009 Polymerase chain reaction based scaffold preparation for the production of thin, branched DNA origami nanostructures of arbitrary sizes. Nano Lett. 9: 4302-4305.
    • (2009) Nano Lett. , vol.9 , pp. 4302-4305
    • Pound, E.1    Ashton, J.R.2    Becerril, H.A.3    Woolley, A.T.4
  • 22
    • 0036125401 scopus 로고    scopus 로고
    • Use of a rapid mismatch PCR method to detect gyrA and parC mutations in ciprofloxacin-resistant clinical isolates of Escherichia coli
    • QIANG, Y. Z., T. QIN, W. FU,W. P. CHENG, Y. S. LI et al., 2002 Use of a rapid mismatch PCR method to detect gyrA and parC mutations in ciprofloxacin-resistant clinical isolates of Escherichia coli. J. Antimicrob. Chemother. 49: 549-552.
    • (2002) J. Antimicrob. Chemother. , vol.49 , pp. 549-552
    • Qiang, Y.Z.1    Qin, T.2    Fu, W.3    Cheng, W.P.4    Li, Y.S.5
  • 23
    • 33847654324 scopus 로고    scopus 로고
    • Recombineering: In vivo genetic engineering in E. coli, S. enterica, and beyond
    • SAWITZKE, J. A., L. C. THOMASON, N. COSTANTINO, M. BUBUNENKO, S. DATTA et al., 2007 Recombineering: in vivo genetic engineering in E. coli, S. enterica, and beyond. Methods Enzymol. 421: 171-199.
    • (2007) Methods Enzymol. , vol.421 , pp. 171-199
    • Sawitzke, J.A.1    Thomason, L.C.2    Costantino, N.3    Bubunenko, M.4    Datta, S.5
  • 24
    • 59849119654 scopus 로고    scopus 로고
    • Recombineering: A homologous recombination-based method of genetic engineering
    • SHARAN, S. K., L. C. THOMASON, S. G. KUZNETSOV and D. L. COURT, 2009 Recombineering: a homologous recombination-based method of genetic engineering. Nat. Protoc. 4: 206-223.
    • (2009) Nat. Protoc. , vol.4 , pp. 206-223
    • Sharan, S.K.1    Thomason, L.C.2    Kuznetsov, S.G.3    Court, D.L.4
  • 27
    • 0035135652 scopus 로고    scopus 로고
    • Rapid engineering of bacterial artificial chromosomes using oligonucleotides
    • SWAMINATHAN, S., H. M. ELLIS, L. S. WATERS, D. YU, E. C. LEE et al., 2001 Rapid engineering of bacterial artificial chromosomes using oligonucleotides. Genesis 29: 14-21.
    • (2001) Genesis , vol.29 , pp. 14-21
    • Swaminathan, S.1    Ellis, H.M.2    Waters, L.S.3    Yu, D.4    Lee, E.C.5
  • 28
    • 70350500013 scopus 로고    scopus 로고
    • Bacteriophage-encoded functions engaged in initiation of homologous recombination events
    • SZCZEPANSKA, A. K., 2009 Bacteriophage-encoded functions engaged in initiation of homologous recombination events. Crit. Rev. Microbiol. 35: 197-220.
    • (2009) Crit. Rev. Microbiol. , vol.35 , pp. 197-220
    • Szczepanska, A.K.1
  • 29
    • 0023644769 scopus 로고
    • Double-chain-cut sites are recombination hotspots in the Red pathway of phage lambda
    • THALER, D. S., M. M. STAHL and F.W. STAHL, 1987 Double-chain-cut sites are recombination hotspots in the Red pathway of phage lambda. J. Mol. Biol. 195: 75-87.
    • (1987) J. Mol. Biol. , vol.195 , pp. 75-87
    • Thaler, D.S.1    Stahl, M.M.2    Stahl, F.W.3
  • 31
    • 34547786556 scopus 로고    scopus 로고
    • Multicopy plasmid modification with phage lambda Red recombineering
    • THOMASON, L. C., N. COSTANTINO, D. V. SHAW and D. L. COURT, 2007b Multicopy plasmid modification with phage lambda Red recombineering. Plasmid 58: 148-158.
    • (2007) Plasmid , vol.58 , pp. 148-158
    • Thomason, L.C.1    Costantino, N.2    Shaw, D.V.3    Court, D.L.4
  • 32
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • WANG, H. H., F. J. ISAACS, P. A. CARR, Z. Z. SUN, G. XU et al., 2009 Programming cells by multiplex genome engineering and accelerated evolution. Nature 460: 894-898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5
  • 33
    • 37349092706 scopus 로고    scopus 로고
    • 6-Deoxyerythronolide B production through chromosomal localization of the deoxyerythronolide B synthase genes in E. coli
    • WANG, Y., and B. A. PFEIFER, 2008 6-Deoxyerythronolide B production through chromosomal localization of the deoxyerythronolide B synthase genes in E. coli. Metab. Eng. 10: 33-38.
    • (2008) Metab. Eng. , vol.10 , pp. 33-38
    • Wang, Y.1    Pfeifer, B.A.2
  • 35
    • 0034705144 scopus 로고    scopus 로고
    • An efficient recombination system for chromosome engineering in Escherichia coli
    • YU, D., H. M. ELLIS, E. C. LEE, N. A. JENKINS, N. G. COPELAND et al., 2000 An efficient recombination system for chromosome engineering in Escherichia coli.Proc. Natl.Acad. Sci. USA97: 5978-5983.
    • (2000) Proc. Natl.Acad. Sci. USA , vol.97 , pp. 5978-5983
    • Yu, D.1    Ellis, H.M.2    Lee, E.C.3    Jenkins, N.A.4    Copeland, N.G.5
  • 36
    • 0038472057 scopus 로고    scopus 로고
    • Recombineering with overlapping single-stranded DNA oligonucleotides: Testing a recombination intermediate
    • YU, D., J. A. SAWITZKE, H. ELLIS and D. L. COURT, 2003 Recombineering with overlapping single-stranded DNA oligonucleotides: testing a recombination intermediate. Proc. Natl. Acad. Sci. USA 100: 7207-7212.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7207-7212
    • Yu, D.1    Sawitzke, J.A.2    Ellis, H.3    Court, D.L.4
  • 37
    • 0031664853 scopus 로고    scopus 로고
    • A new logic for DNA engineering using recombination in Escherichia coli
    • ZHANG, Y., F. BUCHHOLZ, J. P. MUYRERS and A. F. STEWART, 1998 A new logic for DNA engineering using recombination in Escherichia coli. Nat. Genet. 20: 123-128.
    • (1998) Nat. Genet. , vol.20 , pp. 123-128
    • Zhang, Y.1    Buchholz, F.2    Muyrers, J.P.3    Stewart, A.F.4
  • 38
    • 0033668496 scopus 로고    scopus 로고
    • DNA cloning by homologous recombination in Escherichia coli
    • ZHANG, Y., J. P. MUYRERS, G. TESTA and A. F. STEWART, 2000 DNA cloning by homologous recombination in Escherichia coli. Nat. Biotechnol. 18: 1314-1317.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 1314-1317
    • Zhang, Y.1    Muyrers, J.P.2    Testa, G.3    Stewart, A.F.4


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