메뉴 건너뛰기




Volumn 35, Issue 9, 2007, Pages 2944-2954

DNA modification by sulfur: Analysis of the sequence recognition specificity surrounding the modification sites

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANINE; SULFUR;

EID: 34249000758     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm176     Document Type: Article
Times cited : (52)

References (25)
  • 1
    • 0036708355 scopus 로고    scopus 로고
    • Technical improvement to prevent DNA degradation of enteric pathogens in pulsed-field gel electrophoresis
    • Koort,J.M., Lukinmaa,S., Rantala,M., Unkila,E. and Siitonen,A. (2002) Technical improvement to prevent DNA degradation of enteric pathogens in pulsed-field gel electrophoresis. J. Clin. Microbiol., 40, 3497-3498.
    • (2002) J. Clin. Microbiol , vol.40 , pp. 3497-3498
    • Koort, J.M.1    Lukinmaa, S.2    Rantala, M.3    Unkila, E.4    Siitonen, A.5
  • 2
    • 0028321375 scopus 로고
    • Characterization of a Streptomyces-lividans-type site-specific DNA modification system in the avermectin-producer Streptomyces avermitilis permits investigation of two novel giant linear plasmids, pSA1 and pSA2
    • Evans,M., Kaczmarek,F.S., Stutzman-Engwall,K. and Dyson,P. (1994) Characterization of a Streptomyces-lividans-type site-specific DNA modification system in the avermectin-producer Streptomyces avermitilis permits investigation of two novel giant linear plasmids, pSA1 and pSA2. Microbiology, 140(Pt. 6), 1367-1371.
    • (1994) Microbiology , vol.140 , Issue.PART. 6 , pp. 1367-1371
    • Evans, M.1    Kaczmarek, F.S.2    Stutzman-Engwall, K.3    Dyson, P.4
  • 3
    • 0027120929 scopus 로고
    • Tris-dependent site-specific cleavage of Streptomyces lividans DNA
    • Ray,T., Weaden,J. and Dyson,P. (1992) Tris-dependent site-specific cleavage of Streptomyces lividans DNA. FEMS Microbiol. Lett. 75, 247-252.
    • (1992) FEMS Microbiol. Lett , vol.75 , pp. 247-252
    • Ray, T.1    Weaden, J.2    Dyson, P.3
  • 5
    • 0024296696 scopus 로고
    • Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron
    • Zhou,X.F., Deng,Z.X., Firmin,J.L., Hopwood,D.A. and Kieser,T. (1988) Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron. Nucleic Acids Res., 16, 4341-4352.
    • (1988) Nucleic Acids Res , vol.16 , pp. 4341-4352
    • Zhou, X.F.1    Deng, Z.X.2    Firmin, J.L.3    Hopwood, D.A.4    Kieser, T.5
  • 6
    • 0027407781 scopus 로고
    • Pulsed-field gel-electrophoresis of Streptomyces lividans DNA
    • Evans,M. and Dyson,P. (1993) Pulsed-field gel-electrophoresis of Streptomyces lividans DNA. Trends Genet., 9, 72.
    • (1993) Trends Genet , vol.9 , pp. 72
    • Evans, M.1    Dyson, P.2
  • 8
    • 1442359901 scopus 로고    scopus 로고
    • Pulsed-field gel electrophoresis-based subtyping of DNA degradation-sensitive Salmonella enterica subsp. enterica serovar Livingstone and serovar Cerro isolates obtained from a chicken layer farm
    • Murase,T., Nagato,M., Shirota,K., Katoh,H. and Otsuki,K. (2004) Pulsed-field gel electrophoresis-based subtyping of DNA degradation-sensitive Salmonella enterica subsp. enterica serovar Livingstone and serovar Cerro isolates obtained from a chicken layer farm. Vet. Microbiol., 99, 139-143.
    • (2004) Vet. Microbiol , vol.99 , pp. 139-143
    • Murase, T.1    Nagato, M.2    Shirota, K.3    Katoh, H.4    Otsuki, K.5
  • 9
    • 0036219839 scopus 로고    scopus 로고
    • Modified pulsed-field gel electrophoresis method for DNA degradation-sensitive Salmonella enterica and Escherichia coli strains
    • Liesegang,A. and Tschape,H. (2002) Modified pulsed-field gel electrophoresis method for DNA degradation-sensitive Salmonella enterica and Escherichia coli strains. Int. J. Med. Microbiol., 291, 645-648.
    • (2002) Int. J. Med. Microbiol , vol.291 , pp. 645-648
    • Liesegang, A.1    Tschape, H.2
  • 10
    • 0347356271 scopus 로고    scopus 로고
    • Improving typeability of multiple bacterial species using pulsed-field gel electrophoresis and thiourea
    • Silbert,S., Boyken,L., Hollis,R.J. and Pfaller,M.A. (2003) Improving typeability of multiple bacterial species using pulsed-field gel electrophoresis and thiourea. Diagn. Microbiol. Infect. Dis., 47, 619-621.
    • (2003) Diagn. Microbiol. Infect. Dis , vol.47 , pp. 619-621
    • Silbert, S.1    Boyken, L.2    Hollis, R.J.3    Pfaller, M.A.4
  • 11
    • 0342445443 scopus 로고    scopus 로고
    • Achieving 100% typeability of Pseudomonas aeruginosa by pulsed-field gel electrophoresis
    • Romling,U. and Tummler,B. (2000) Achieving 100% typeability of Pseudomonas aeruginosa by pulsed-field gel electrophoresis. J. Clin. Microbiol., 38, 464-465.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 464-465
    • Romling, U.1    Tummler, B.2
  • 12
    • 0036135677 scopus 로고    scopus 로고
    • Molecular fingerprinting of Clostridium difficile isolates: Pulsed-field gel electrophoresis versus amplified fragment length polymorphism
    • Klaassen,C.H., van Haren,H.A. and Horrevorts,A.M. (2002) Molecular fingerprinting of Clostridium difficile isolates: Pulsed-field gel electrophoresis versus amplified fragment length polymorphism. J. Clin. Microbiol., 40, 101-104.
    • (2002) J. Clin. Microbiol , vol.40 , pp. 101-104
    • Klaassen, C.H.1    van Haren, H.A.2    Horrevorts, A.M.3
  • 13
    • 0033942342 scopus 로고    scopus 로고
    • Pulsed-field gel electrophoresis of degradation-sensitive DNAs from Clostridium difficile PCR ribotype 1 strains
    • Corkill,J.E., Graham,R., Hart,C.A. and Stubbs,S. (2000) Pulsed-field gel electrophoresis of degradation-sensitive DNAs from Clostridium difficile PCR ribotype 1 strains. J. Clin. Microbiol., 38 2791-2792.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 2791-2792
    • Corkill, J.E.1    Graham, R.2    Hart, C.A.3    Stubbs, S.4
  • 14
    • 0032029593 scopus 로고    scopus 로고
    • Novel post-replicative DNA modification in Streptomyces: Analysis of the preferred modification site of plasmid pIJ101
    • Dyson,P. and Evans,M. (1998) Novel post-replicative DNA modification in Streptomyces: Analysis of the preferred modification site of plasmid pIJ101. Nucleic Acids Res., 26, 1248-1253.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1248-1253
    • Dyson, P.1    Evans, M.2
  • 15
    • 0032528115 scopus 로고    scopus 로고
    • Novel site-specific DNA modification in Streptomyces: Analysis of preferred intragenic modification sites present in a 5.7 kb amplified DNA sequence
    • Boybek,A., Ray,T.D., Evans,M.C. and Dyson,P.J. (1998) Novel site-specific DNA modification in Streptomyces: Analysis of preferred intragenic modification sites present in a 5.7 kb amplified DNA sequence. Nucleic Acids Res., 26, 3364-3371.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3364-3371
    • Boybek, A.1    Ray, T.D.2    Evans, M.C.3    Dyson, P.J.4
  • 18
    • 20544471894 scopus 로고    scopus 로고
    • A bifunctional cosmid vector for the mobilized conjugal transfer of DNA from Escherichia coli to Streptomyces spp
    • Bao,K., Hu,Z.H., Zhou,X.F., Zhou,Q. and Deng,Z.X. (1997) A bifunctional cosmid vector for the mobilized conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Prog. Nat. Sci., 7, 568-572.
    • (1997) Prog. Nat. Sci , vol.7 , pp. 568-572
    • Bao, K.1    Hu, Z.H.2    Zhou, X.F.3    Zhou, Q.4    Deng, Z.X.5
  • 19
    • 33748991172 scopus 로고    scopus 로고
    • Antibiotic biosynthetic pathways and pathway engineering - a growing research field in China
    • Deng,Z.X. and Bai,L.Q. (2006) Antibiotic biosynthetic pathways and pathway engineering - a growing research field in China. Nat. Prod. Rep., 23, 811-827.
    • (2006) Nat. Prod. Rep , vol.23 , pp. 811-827
    • Deng, Z.X.1    Bai, L.Q.2
  • 20
    • 0037082166 scopus 로고    scopus 로고
    • PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors
    • Kuwayama,H., Obara,S., Morio,T., Katoh,M., Urushihara,H. and Tanaka,Y. (2002) PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors. Nucleic Acids Res., 30, E2.
    • (2002) Nucleic Acids Res , vol.30
    • Kuwayama, H.1    Obara, S.2    Morio, T.3    Katoh, M.4    Urushihara, H.5    Tanaka, Y.6
  • 21
    • 10444227397 scopus 로고    scopus 로고
    • Streptomyces coelicolor A3(2) lacks a genomic island present in the chromosome of Streptomyces lividans 66
    • Zhou,X.F., He,X.Y., Li,A.Y., Lei,F., Kieser,T. and Deng,Z.X. (2004) Streptomyces coelicolor A3(2) lacks a genomic island present in the chromosome of Streptomyces lividans 66. Appl. Environ. Microbiol., 70, 7110-7118.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 7110-7118
    • Zhou, X.F.1    He, X.Y.2    Li, A.Y.3    Lei, F.4    Kieser, T.5    Deng, Z.X.6
  • 22
    • 0029072531 scopus 로고
    • Tris-dependent oxidative DNA strand scission during electrophoresis
    • Ray,T., Mills,A. and Dyson,P. (1995) Tris-dependent oxidative DNA strand scission during electrophoresis. Electrophoresis, 16, 888-894.
    • (1995) Electrophoresis , vol.16 , pp. 888-894
    • Ray, T.1    Mills, A.2    Dyson, P.3
  • 23
    • 0032898961 scopus 로고    scopus 로고
    • Evidence that the extracytoplasmic function sigma factor sigmaE is required for normal cell wall structure in Streptomyces coelicolor A3(2)
    • Paget,M.S., Chamberlin,L., Atrih,A., Foster,S.J. and Buttner,M.J. (1999) Evidence that the extracytoplasmic function sigma factor sigmaE is required for normal cell wall structure in Streptomyces coelicolor A3(2). J. Bacteriol., 181, 204-211.
    • (1999) J. Bacteriol , vol.181 , pp. 204-211
    • Paget, M.S.1    Chamberlin, L.2    Atrih, A.3    Foster, S.J.4    Buttner, M.J.5
  • 24
    • 0026645203 scopus 로고
    • Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp
    • Bierman,M., Logan,R., O'Brien,K., Seno,E.T., Rao,R.N. and Schoner,B.E. (1992) Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene, 116, 43-49.
    • (1992) Gene , vol.116 , pp. 43-49
    • Bierman, M.1    Logan, R.2    O'Brien, K.3    Seno, E.T.4    Rao, R.N.5    Schoner, B.E.6
  • 25
    • 34249073729 scopus 로고    scopus 로고
    • A novel DNA modification by sulfur: DndA is a NifS-like cysteine desulfurase capable of assembling DndC as an iron-sulfur cluster protein in Streptomyces lividans
    • DOI:10.1021/bi602615k
    • You, D.L., Wang, L.R., Yao, F., Zhou,X.F. and Z. Deng (2007). A novel DNA modification by sulfur: DndA is a NifS-like cysteine desulfurase capable of assembling DndC as an iron-sulfur cluster protein in Streptomyces lividans. Biochemistry. DOI:10.1021/bi602615k.
    • (2007) Biochemistry
    • You, D.L.1    Wang, L.R.2    Yao, F.3    Zhou, X.F.4    Deng, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.