Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 5, 2008, Pages 1626-1631

  Datta, Simanti ^a   Costantino, Nina ^a   Zhou, Xiaomei ^a   Court, Donald L ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

Bacteriophage lambda; Beta; Oligonucleotide recombination; RecT; ssDNA annealing proteins

Indexed keywords

DOUBLE STRANDED DNA; EXONUCLEASE; RECOMBINASE; RECT PROTEIN; DNA BINDING PROTEIN; EXO PROTEIN, BACTERIOPHAGE LAMBDA; EXODEOXYRIBONUCLEASE; GAM PROTEIN, COLIPHAGE; OLIGONUCLEOTIDE; UNCLASSIFIED DRUG; VIRUS DNA; VIRUS PROTEIN;

ARTICLE; BACTERIOPHAGE; BACTERIOPHAGE LAMBDA; DNA RECOMBINATION; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE AMPLIFICATION; GENE CONSTRUCT; GENE FUNCTION; GENETIC IDENTIFICATION; GENETIC RECOMBINATION; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; BACTERIAL GENE; GENETICS; METABOLISM; PHYSIOLOGY; PROPHAGE;

BACTERIA (MICROORGANISMS); ENTEROBACTERIA PHAGE LAMBDA; ESCHERICHIA COLI; NEGIBACTERIA; POSIBACTERIA;

BACTERIOPHAGE LAMBDA; BACTERIOPHAGES; DNA, VIRAL; DNA-BINDING PROTEINS; EXODEOXYRIBONUCLEASES; GENES, BACTERIAL; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; OLIGONUCLEOTIDES; PROPHAGES; RECOMBINASES; RECOMBINATION, GENETIC; VIRAL PROTEINS;

EID: 40349101854     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0709089105     Document Type: Article

References (34)

1. Court DL, Sawitzke JA, Thomason LC (2002) Annu Rev Genet 36:361-388.
2. Copeland NG, Jenkins NA, Court DL (2001) Nat Rev Genet 2:769-779.
3. Murphy KC (1998) J Bacteriol 180:2063-2071.
4. Zhang Y, Buchholz F, Muyrers JP, Stewart AF (1998) Nat Genet 20:123-128.
5. Clark AJ, Sharma V, Brenowitz S, Chu CC, Sandler S, Satin L, Templin A, Berger I, Cohen A (1993) J Bacteriol 175:7673-7682.
6. Muyrers JP, Zhang Y, Buchholz F, Stewart AF (2000) Genes Dev 14:1971-1982.
7. Iyer LM, Koonin EV, Aravind L (2002) BMC Genomics 3:8.
8. Little JW (1967) J Biol Chem 242:679-686.
9. Joseph JW, Kolodner R (1983) J Biol Chem 258:10418-10424.
10. Karakousis G, Ye N, Li Z, Chiu SK, Reddy G, Radding CM (1998) J Mol Biol 276:721-731.
11. Li Z, Karakousis G, Chiu SK, Reddy G, Radding CM (1998) J Mol Biol 276:733-744.
12. Hall SD, Kolodner RD (1994) Proc Natl Acad Sci USA 91:3205-3209.
13. Unger RC, Clark AJ (1972) J Mol Biol 70:539-548.
14. Kulkarni SK, Stahl FW (1989) Genetics 123:249-253.
15. Yu D, Ellis HM, Lee EC, Jenkins NA, Copeland NG, Court DL (2000) Proc Natl Acad Sci USA 97:5978-5983.
16. Murphy KC, Campellone KG, Poteete AR (2000) Gene 246:321-330.
17. Lee EC, Yu D, Martinez de Velasco J, Tessarollo L, Swing DA, Court DL, Jenkins NA, Copeland NG (2001) Genomics 73:56-65.
18. Ellis HM, Yu D, DiTizio T, Court DL (2001) Proc Natl Acad Sci USA 98:6742-6746.
19. Swaminathan S, Ellis HM, Waters LS, Yu D, Lee EC, Court DL, Sharan SK (2001) Genesis 29:14-21.
20. Costantino N, Court DL (2003) Proc Natl Acad Sci USA 100:15748-15753.
21. Zhang Y, Muyrers JP, Rientjes J, Stewart AF (2003) BMC Mol Biol 4:1.
22. Yu D, Sawitzke JA, Ellis H, Court DL (2003) Proc Natl Acad Sci USA 100:7207-7212.
23. Modrich P (1991) Annu Rev Genet 25:229-253.
24. Court DL, Oppenheim AB, Adhya SL (2007) J Bacteriol 189:298-304.
25. Martinez-Martinez I, Navarro-Fernandez J, Lozada-Ramirez JD, Garcia-Carmona F, Sanchez-Ferrer A (2006) Biotechnol Prog 22:647-652.
26. Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, et al. (2005) Nature 433:531-537.
27. van Kessel JC, Hatfull GF (2007) Nat Methods 4:147-152.
28. Thomason LC, Bubunenko M, Costantino N, Wilson H, Oppenheim A, Datta S, Court DL (2005) in Current Protocols in Molecular Biology (Wiley, Hoboken, NJ), pp 1-21.
29. Sawitzke JA, Thomason LC, Costantino N, Bubunenko M, Datta S, Court DL (2007) Methods Enzymol 421:171-199.
30. Daniels DL, Schroeder JL, Szybalski W, Sanger F, Coulson AR, Hong GF, Hill DF, Petersen GB, Blattner FR (1983) in Lambda II, eds Hendrix RW, Roberts JW, Stahl FW, Weisberg RA (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY), pp 519-676.
31. Datta S, Costantino N, Court DL (2006) Gene 379:109-115.
32. Blomfield IC, Vaughn V, Rest RF, Eisenstein BI (1991) Mol Microbiol 5:1447-1457.
33. Thompson JD, Higgins DG, Gibson TJ (1994) Nucleic Acids Res 22:4673-4680.
34. Felsenstein J (2005) PHYLIP, Phylogeny Interface Package (Departments of Genome Sciences and Biology, University of Washington, Seattle), Version 3.6.