메뉴 건너뛰기




Volumn 106, Issue 51, 2009, Pages 21748-21753

The impact of long-distance horizontal gene transfer on prokaryotic genome size

Author keywords

Functional gene content; Lateral gene transfer; Microbial genomes; Scaling

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE CONTROL; GENOME ANALYSIS; GENOME SIZE; HORIZONTAL GENE TRANSFER; MULTIGENE FAMILY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE;

EID: 76049094717     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0907584106     Document Type: Article
Times cited : (51)

References (39)
  • 1
    • 33749987465 scopus 로고    scopus 로고
    • The 160-kilobase genome of the bacterial endosymbiont Carsonella
    • Nakabachi A, et al. (2006) The 160-kilobase genome of the bacterial endosymbiont Carsonella. Science 314:267.
    • (2006) Science , vol.314 , pp. 267
    • Nakabachi, A.1
  • 2
    • 1542327668 scopus 로고    scopus 로고
    • Trends between gene content and genome size in prokaryotic species with larger genomes
    • Konstantinidis KT, Tiedje JM (2004) Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci USA 101:3160-3165.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 3160-3165
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 3
    • 0034799370 scopus 로고    scopus 로고
    • Whole genome plasticity in pathogenic bacteria
    • Dobrindt U, Hacker J (2001) Whole genome plasticity in pathogenic bacteria. Curr Opin Microbiol 45:550-557.
    • (2001) Curr Opin Microbiol , vol.45 , pp. 550-557
    • Dobrindt, U.1    Hacker, J.2
  • 4
    • 16544369474 scopus 로고    scopus 로고
    • Comment on The origins of genome complexity
    • Daubin V, Moran NA (2004) Comment on "The origins of genome complexity." Science 306:978.
    • (2004) Science , vol.306 , pp. 978
    • Daubin, V.1    Moran, N.A.2
  • 5
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat E, Daubin V, Ochman H, Moran NA (2005) Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3:e130.
    • (2005) PLoS Biol , vol.3
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 6
    • 0034682457 scopus 로고    scopus 로고
    • Interpreting the universal phylogenetic tree
    • Woese CR (2000) Interpreting the universal phylogenetic tree. Proc Natl Acad Sci USA 97:8392-8396.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8392-8396
    • Woese, C.R.1
  • 8
    • 48249151749 scopus 로고    scopus 로고
    • Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
    • MartinW
    • Dagan T, Artzy-Randrup Y, MartinW(2008) Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci USA 105:10039-10044.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10039-10044
    • Dagan, T.1    Artzy-Randrup, Y.2
  • 10
    • 25444524604 scopus 로고    scopus 로고
    • Tettelin H, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pan-genome. Proc Natl Acad Sci USA 102:13950-13955.
    • Tettelin H, et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome." Proc Natl Acad Sci USA 102:13950-13955.
  • 11
    • 14544287770 scopus 로고    scopus 로고
    • Genotypic diversity within a natural coastal bacterioplankton population
    • Thompson JR, et al. (2005) Genotypic diversity within a natural coastal bacterioplankton population. Science 307:1311-1313.
    • (2005) Science , vol.307 , pp. 1311-1313
    • Thompson, J.R.1
  • 12
    • 0242490943 scopus 로고    scopus 로고
    • Lateral gene transfer: When will adolescence end?
    • Lawrence JG, Hendrickson H (2003) Lateral gene transfer: When will adolescence end? Mol Microbiol 50:739-749.
    • (2003) Mol Microbiol , vol.50 , pp. 739-749
    • Lawrence, J.G.1    Hendrickson, H.2
  • 13
    • 0035989433 scopus 로고    scopus 로고
    • Distributional profiles of homologous open reading frames among bacterial phyla: Implications for vertical and lateral transmission
    • Ragan MA, Charlebois RL (2002) Distributional profiles of homologous open reading frames among bacterial phyla: Implications for vertical and lateral transmission. Int J Syst Evol Microbiol 52:777-787.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 777-787
    • Ragan, M.A.1    Charlebois, R.L.2
  • 15
    • 40449110008 scopus 로고    scopus 로고
    • Coevolution of gene families in prokaryotes
    • Cordero OX, Snel B, Hogeweg P (2008) Coevolution of gene families in prokaryotes. Genome Res 18:462-468.
    • (2008) Genome Res , vol.18 , pp. 462-468
    • Cordero, O.X.1    Snel, B.2    Hogeweg, P.3
  • 16
    • 33846476262 scopus 로고    scopus 로고
    • Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
    • Dagan T, Martin W (2007) Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc Natl Acad Sci USA 104:870-875.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 870-875
    • Dagan, T.1    Martin, W.2
  • 17
    • 33846086800 scopus 로고    scopus 로고
    • Recent developments in the integration and prediction of protein interactions
    • STRING 7
    • Von Mering C, et al. (2007) STRING 7: Recent developments in the integration and prediction of protein interactions. Nucleic Acids Res 35:D358-D362.
    • (2007) Nucleic Acids Res , vol.35
    • Von Mering, C.1
  • 18
    • 58149186488 scopus 로고    scopus 로고
    • The National Center for Biotechnology Information's Protein Clusters Database
    • Klimke W, et al. (2009) The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res 37:D216-D223.
    • (2009) Nucleic Acids Res , vol.37
    • Klimke, W.1
  • 19
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ (1997) A genomic perspective on protein families. Science 278:631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 20
    • 58549120938 scopus 로고    scopus 로고
    • Atypical one-carbon metabolism of an acetogenic and hydrogenogenic Moorella thermoacetica strain
    • Jiang B, et al. (2009) Atypical one-carbon metabolism of an acetogenic and hydrogenogenic Moorella thermoacetica strain. Arch Microbiol 191:123-131.
    • (2009) Arch Microbiol , vol.191 , pp. 123-131
    • Jiang, B.1
  • 21
    • 0035653451 scopus 로고    scopus 로고
    • Benzoate fermentation by the anaerobic bacterium Syntrophus aciditrophicus in the absence of hydrogen-using microorganisms
    • Elshahed MS, McInerney MJ (2001) Benzoate fermentation by the anaerobic bacterium Syntrophus aciditrophicus in the absence of hydrogen-using microorganisms. Appl Environ Microbiol 67:5520-5525.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5520-5525
    • Elshahed, M.S.1    McInerney, M.J.2
  • 22
    • 30344471824 scopus 로고    scopus 로고
    • Do different surrogate methods detect lateral genetic transfer events of different relative ages?
    • Ragan MA, Harlow TJ, Beiko RG (2006) Do different surrogate methods detect lateral genetic transfer events of different relative ages? Trends Microbiol 14:4-8.
    • (2006) Trends Microbiol , vol.14 , pp. 4-8
    • Ragan, M.A.1    Harlow, T.J.2    Beiko, R.G.3
  • 23
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • Nakamura Y, Itoh T, Matsuda H, Gojobori T (2004) Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 36:760-766.
    • (2004) Nat Genet , vol.36 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4
  • 24
    • 0037665941 scopus 로고    scopus 로고
    • Transcription regulation and environmental adaptation in bacteria
    • Cases I, De Lorenzo V, Ouzounis CA (2003) Transcription regulation and environmental adaptation in bacteria. Trends Microbiol 11:248-253.
    • (2003) Trends Microbiol , vol.11 , pp. 248-253
    • Cases, I.1    De Lorenzo, V.2    Ouzounis, C.A.3
  • 25
    • 0041828241 scopus 로고    scopus 로고
    • Scaling laws in the functional content of genomes
    • Van Nimwegen E (2003) Scaling laws in the functional content of genomes. Trends Genet 19:479-484.
    • (2003) Trends Genet , vol.19 , pp. 479-484
    • Van Nimwegen, E.1
  • 26
    • 34848924929 scopus 로고    scopus 로고
    • Large changes in regulome size herald the main prokaryotic lineages
    • Cordero OX, Hogeweg P (2007) Large changes in regulome size herald the main prokaryotic lineages. Trends Genet 23:488-493.
    • (2007) Trends Genet , vol.23 , pp. 488-493
    • Cordero, O.X.1    Hogeweg, P.2
  • 27
    • 38549146894 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Finn RD, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36:D281-D288.
    • (2008) Nucleic Acids Res , vol.36
    • Finn, R.D.1
  • 28
    • 33751429178 scopus 로고    scopus 로고
    • The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
    • Alm E, Huang K, Arkin A (2006) The evolution of two-component systems in bacteria reveals different strategies for niche adaptation. PLoS Comput Biol 2:e143.
    • (2006) PLoS Comput Biol , vol.2
    • Alm, E.1    Huang, K.2    Arkin, A.3
  • 29
    • 12944325784 scopus 로고    scopus 로고
    • One-component systems dominate signal transduction in prokaryotes
    • Ulrich LE, Koonin EV, Zhulin IB (2005) One-component systems dominate signal transduction in prokaryotes. Trends Microbiol 13:52-56.
    • (2005) Trends Microbiol , vol.13 , pp. 52-56
    • Ulrich, L.E.1    Koonin, E.V.2    Zhulin, I.B.3
  • 30
    • 57549115252 scopus 로고    scopus 로고
    • The fate of new bacterial genes
    • Kuo CH, Ochman H (2009) The fate of new bacterial genes. FEMS Microbiol Rev 33:38-43.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 38-43
    • Kuo, C.H.1    Ochman, H.2
  • 32
    • 0028889420 scopus 로고
    • Conjugative transposons: An unusual and diverse set of integrated gene transfer elements
    • Salyers AA, Shoemaker NB, Stevens AM, Li LY (1995) Conjugative transposons: An unusual and diverse set of integrated gene transfer elements. Microbiol Rev 59:579-590.
    • (1995) Microbiol Rev , vol.59 , pp. 579-590
    • Salyers, A.A.1    Shoemaker, N.B.2    Stevens, A.M.3    Li, L.Y.4
  • 33
    • 55049138544 scopus 로고    scopus 로고
    • Evolutionary patterns in prokaryotic genomes
    • Rocha EP (2008) Evolutionary patterns in prokaryotic genomes. Curr Opin Microbiol 11:454-460.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 454-460
    • Rocha, E.P.1
  • 35
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain R, Rivera MC, Lake JA (1999) Horizontal gene transfer among genomes: The complexity hypothesis. Proc Natl Acad Sci USA 96:3801-3806.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 37
    • 20244376755 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial communities
    • Tringe SG, et al. (2005) Comparative metagenomics of microbial communities. Science 308:554-557.
    • (2005) Science , vol.308 , pp. 554-557
    • Tringe, S.G.1
  • 38
    • 22244489084 scopus 로고    scopus 로고
    • The Microbes Online web site for comparative genomics
    • Alm EJ, et al. (2005) The Microbes Online web site for comparative genomics. Genome Res 15:1015-1022.
    • (2005) Genome Res , vol.15 , pp. 1015-1022
    • Alm, E.J.1
  • 39
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • Cole JR, et al. (2009) The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37:D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.