-
1
-
-
55449128330
-
BATS: A bayesian user-friendly software for analyzing time series microarray experiments
-
Angelini, C. et al. (2008) BATS: a bayesian user-friendly software for analyzing time series microarray experiments. BMC Bioinformatics, 9, 415.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 415
-
-
Angelini, C.1
-
2
-
-
77951973535
-
Consistent annotation of gene expression arrays
-
Ballester, B. et al. (2010) Consistent annotation of gene expression arrays. BMC Genomics, 11, 294.
-
(2010)
BMC Genomics
, vol.11
, pp. 294
-
-
Ballester, B.1
-
3
-
-
33847055114
-
How to infer gene networks from expression profiles
-
Bansal, M. et al. (2007) How to infer gene networks from expression profiles. Mol. Syst. Biol., 3, 78.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 78
-
-
Bansal, M.1
-
4
-
-
16844376909
-
Reverse engineering of regulatory networks in human b cells
-
Basso, K. et al. (2005) Reverse engineering of regulatory networks in human b cells. Nat. Genet., 37, 382-390.
-
(2005)
Nat. Genet.
, vol.37
, pp. 382-390
-
-
Basso, K.1
-
5
-
-
3843070757
-
Starvation response in mouse liver shows strong correlation with life-span-prolonging processes
-
Bauer, M. et al. (2004) Starvation response in mouse liver shows strong correlation with life-span-prolonging processes. Physiol Genomics, 17, 230-244.
-
(2004)
Physiol Genomics
, vol.17
, pp. 230-244
-
-
Bauer, M.1
-
6
-
-
80455178749
-
Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function
-
Belcastro, V. et al. (2011) Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function. Nucleic Acids Res., 39, 8677-8688.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8677-8688
-
-
Belcastro, V.1
-
7
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. et al. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B, 57, 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
-
8
-
-
64349094767
-
Tissue specificity and the human protein interaction network
-
Bossi, A. et al. (2009) Tissue specificity and the human protein interaction network. Mol. Syst. Biol., 5, 260.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 260
-
-
Bossi, A.1
-
9
-
-
18344396568
-
Minimum information about a microarray experiment (miame)-toward standards for microarray data
-
Brazma, A. et al. (2001) Minimum information about a microarray experiment (miame)-toward standards for microarray data. Nat. Genet., 29, 365-371.
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
-
10
-
-
0025262417
-
Abnormal structure and expression of p53 gene in human hepatocellular carcinoma
-
Bressac, B. et al. (1990) Abnormal structure and expression of p53 gene in human hepatocellular carcinoma. Proc. Natl. Acad. Sci. USA, 87, 1973-1977.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 1973-1977
-
-
Bressac, B.1
-
11
-
-
80155145050
-
Dying for something to eat: How cells respond to starvation
-
Caro-Maldonado, A. et al. (2011) Dying for something to eat: how cells respond to starvation. Open Cell Signal. J., 3, 42-51.
-
(2011)
Open Cell Signal. J.
, vol.3
, pp. 42-51
-
-
Caro-Maldonado, A.1
-
12
-
-
84859977895
-
Sirtuins mediate mammalian metabolic responses to nutrient availability
-
Chalkiadaki, A. et al. (2012) Sirtuins mediate mammalian metabolic responses to nutrient availability. Nat Rev Endocrinol., 8, 287-296.
-
(2012)
Nat Rev Endocrinol.
, vol.8
, pp. 287-296
-
-
Chalkiadaki, A.1
-
13
-
-
70350682038
-
Statistical methods for gene set co-expression analysis
-
Choi, Y.J. et al. (2009) Statistical methods for gene set co-expression analysis. Bioinformatics, 25, 2780-2786.
-
(2009)
Bioinformatics
, vol.25
, pp. 2780-2786
-
-
Choi, Y.J.1
-
14
-
-
78651275182
-
Reactome: A database of reactions, pathways and biological processes
-
Croft, D. et al. (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res., 39, D691-D697.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Croft, D.1
-
15
-
-
77953913791
-
From 'differential expression' to 'differential networking'- identification of dysfunctional regulatory networks in diseases
-
de la Fuente, A. (2010) From 'differential expression' to 'differential networking'- identification of dysfunctional regulatory networks in diseases. Trends Genet., 26, 326-333.
-
(2010)
Trends Genet.
, vol.26
, pp. 326-333
-
-
De La Fuente, A.1
-
16
-
-
33645863768
-
Transcriptional regulation of metabolism
-
Desvergne, B. et al. (2006) Transcriptional regulation of metabolism. Physiol. Rev., 86, 465-514.
-
(2006)
Physiol. Rev.
, vol.86
, pp. 465-514
-
-
Desvergne, B.1
-
17
-
-
59649125309
-
Analyzing macroautophagy in hepatocytes and the liver
-
Ding, W.X. et al. (2009) Analyzing macroautophagy in hepatocytes and the liver. Methods Enzymol., 453, 397-416.
-
(2009)
Methods Enzymol.
, vol.453
, pp. 397-416
-
-
Ding, W.X.1
-
18
-
-
14844354489
-
Development of oncology drug response markers using transcription profiling
-
Dracopoli, N.C. et al. (2005) Development of oncology drug response markers using transcription profiling. Curr. Mol. Med., 5, 103-110.
-
(2005)
Curr. Mol. Med.
, vol.5
, pp. 103-110
-
-
Dracopoli, N.C.1
-
19
-
-
70349421143
-
Review article: Nuclear receptors and liver disease-current understanding and new therapeutic implications
-
Elfaki, D.A. et al. (2009) Review article: nuclear receptors and liver disease-current understanding and new therapeutic implications. Aliment. Pharmacol. Ther., 30, 816-825.
-
(2009)
Aliment. Pharmacol. Ther.
, vol.30
, pp. 816-825
-
-
Elfaki, D.A.1
-
20
-
-
33846400424
-
Large-scale mapping and validation of escherichia coli transcriptional regulation from a compendium of expression profiles
-
Faith, J.J. et al. (2007) Large-scale mapping and validation of escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol., 5, e8.
-
(2007)
PLoS Biol.
, vol.5
-
-
Faith, J.J.1
-
21
-
-
38649085333
-
Novel definition files for human genechips based on genean-not
-
Ferrari, F. et al. (2007) Novel definition files for human genechips based on genean-not. BMC Bioinformatics, 8, 446.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 446
-
-
Ferrari, F.1
-
22
-
-
0029046931
-
Identification of a nuclear receptor that is activated by farnesol metabolites
-
Forman, B.M. et al. (1995) Identification of a nuclear receptor that is activated by farnesol metabolites. Cell, 81, 687-693.
-
(1995)
Cell
, vol.81
, pp. 687-693
-
-
Forman, B.M.1
-
23
-
-
0038210248
-
Nuclear receptors and the control of metabolism
-
Francis, G.A. et al. (2003) Nuclear receptors and the control of metabolism. Annu. Rev. Physiol., 65, 261-311.
-
(2003)
Annu. Rev. Physiol.
, vol.65
, pp. 261-311
-
-
Francis, G.A.1
-
24
-
-
77956407882
-
HepatoNet1: A comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology
-
Gille, C. et al. (2010) HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology. Mol. Syst. Biol., 6, 411.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 411
-
-
Gille, C.1
-
25
-
-
40049088000
-
PPARalpha: Mechanism of species differences and hepa-tocarcinogenesis of peroxisome proliferators
-
Gonzalez, F.J. et al. (2008) PPARalpha: Mechanism of species differences and hepa-tocarcinogenesis of peroxisome proliferators. Toxicology, 246, 2-8.
-
(2008)
Toxicology
, vol.246
, pp. 2-8
-
-
Gonzalez, F.J.1
-
26
-
-
33847676786
-
Regulation of p53 stability in p53 mutated human and mouse hepatoma cells
-
Hailfinger, S. et al. (2007) Regulation of p53 stability in p53 mutated human and mouse hepatoma cells. Int. J. Cancer, 120, 1459-1464.
-
(2007)
Int. J. Cancer
, vol.120
, pp. 1459-1464
-
-
Hailfinger, S.1
-
27
-
-
79955539414
-
Interorgan coordination of the murine adaptive response to fasting
-
Hakvoort, T.B. et al. (2011) Interorgan coordination of the murine adaptive response to fasting. J. Biol. Chem., 286, 16332-16343.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 16332-16343
-
-
Hakvoort, T.B.1
-
28
-
-
34547131280
-
A robust measure of correlation between two genes on a microarray
-
Hardin, J. et al. (2007) A robust measure of correlation between two genes on a microarray. BMC Bioinformatics, 8, 220.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 220
-
-
Hardin, J.1
-
29
-
-
0347122080
-
Application of eVOC: Controlled vocabularies for unifying gene expression data
-
Hide, W. et al. (2003) Application of eVOC: controlled vocabularies for unifying gene expression data. C. R. Biol., 326, 1089-1096.
-
(2003)
C. R. Biol.
, vol.326
, pp. 1089-1096
-
-
Hide, W.1
-
30
-
-
0023394825
-
Immunological evidence for the association of p53 with a heat shock protein, hsc70, in p53-plus-ras-transformed cell lines
-
Hinds, P.W. et al. (1987) Immunological evidence for the association of p53 with a heat shock protein, hsc70, in p53-plus-ras-transformed cell lines. Mol. Cell. Biol., 7, 2863-2869.
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 2863-2869
-
-
Hinds, P.W.1
-
31
-
-
0027207612
-
P53 gene mutation and integrated hepatitis b viral DNA sequences in human liver cancer cell lines
-
Hsu, I.C. et al. (1993) p53 gene mutation and integrated hepatitis b viral DNA sequences in human liver cancer cell lines. Carcinogenesis, 14, 987-992.
-
(1993)
Carcinogenesis
, vol.14
, pp. 987-992
-
-
Hsu, I.C.1
-
32
-
-
27844553841
-
Hepatic peroxisomal fatty acid beta-oxidation is regulated by liver x receptor alpha
-
Hu, T. et al. (2005) Hepatic peroxisomal fatty acid beta-oxidation is regulated by liver x receptor alpha. Endocrinology, 146, 5380-5387.
-
(2005)
Endocrinology
, vol.146
, pp. 5380-5387
-
-
Hu, T.1
-
33
-
-
0036138306
-
The role Acyl-CoA thioesterases play in mediating intra-cellular lipid metabolism
-
Hunt, M.C. et al. (2002) The role Acyl-CoA thioesterases play in mediating intra-cellular lipid metabolism. Prog. Lipid Res., 41, 99-130.
-
(2002)
Prog. Lipid Res.
, vol.41
, pp. 99-130
-
-
Hunt, M.C.1
-
34
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
Ideker, T. et al. (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18, 1233-1240.
-
(2002)
Bioinformatics
, vol.18
, pp. 1233-1240
-
-
Ideker, T.1
-
35
-
-
84856094560
-
Differential network biology
-
Ideker, T. et al. (2012) Differential network biology. Mol. Syst. Biol., 8, 565.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 565
-
-
Ideker, T.1
-
36
-
-
0036845620
-
Patterns of gene expression in atrophying skeletal muscles: Response to food deprivation
-
Jagoe, R.T. et al. (2002) Patterns of gene expression in atrophying skeletal muscles: response to food deprivation. FASEB J., 16, 1697-1712.
-
(2002)
FASEB J.
, vol.16
, pp. 1697-1712
-
-
Jagoe, R.T.1
-
37
-
-
0037805576
-
The KEGG database
-
discussion 101-103, 119-128, 244-252
-
Kanehisa, M. et al. (2002) The KEGG database. Novartis Found. Symp., 247, 91-101; discussion 101-103, 119-128, 244-252.
-
(2002)
Novartis Found. Symp.
, vol.247
, pp. 91-101
-
-
Kanehisa, M.1
-
38
-
-
75549085494
-
Gene expression atlas at the European bioinformatics institute
-
Kapushesky, M. et al. (2010) Gene expression atlas at the European bioinformatics institute. Nucleic Acids Res., 38, D690-D698.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kapushesky, M.1
-
39
-
-
33646200155
-
Expression dynamics of a cellular metabolic network
-
Kharchenko, P. et al. (2005) Expression dynamics of a cellular metabolic network. Mol. Syst. Biol., 1, 2005.
-
(2005)
Mol. Syst. Biol.
, vol.1
, pp. 2005
-
-
Kharchenko, P.1
-
40
-
-
77952526597
-
Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance
-
Kleemann, R. et al. (2010) Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance. PLoS One, 5, e8817.
-
(2010)
PLoS One
, vol.5
-
-
Kleemann, R.1
-
41
-
-
21044446187
-
Finding disease specific alterations in the co-expression of genes
-
Kostka, D. et al. (2004) Finding disease specific alterations in the co-expression of genes. Bioinformatics, 20 (Suppl. 1), i194-i199.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Kostka, D.1
-
42
-
-
80555156095
-
SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers
-
Krebs, A. et al. (2011) SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers. Mol. Cell, 44, 410-423.
-
(2011)
Mol. Cell
, vol.44
, pp. 410-423
-
-
Krebs, A.1
-
43
-
-
79551545346
-
Is my network module preserved and reproducible?
-
Langfelder, P. et al. (2011) Is my network module preserved and reproducible? PLoS Comput. Biol., 7, e1001057.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Langfelder, P.1
-
44
-
-
77649293496
-
The effect of food intake on gene expression in human peripheral blood
-
Leonardson, A.S. et al. (2010) The effect of food intake on gene expression in human peripheral blood. Hum. Mol. Genet., 19, 159-169.
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. 159-169
-
-
Leonardson, A.S.1
-
45
-
-
21144446106
-
PGC-1alpha deficiency causes multi-system energy metabolic derangements: Muscle dysfunction, abnormal weight control and hepatic stea-tosis
-
Leone, T. et al. (2005) PGC-1alpha deficiency causes multi-system energy metabolic derangements: muscle dysfunction, abnormal weight control and hepatic stea-tosis. PLoS Biol., 3, e101.
-
(2005)
PLoS Biol.
, vol.3
-
-
Leone, T.1
-
46
-
-
37649005234
-
Autophagy in the pathogenesis of disease
-
Levine, B. et al. (2008) Autophagy in the pathogenesis of disease. Cell, 132, 27-42.
-
(2008)
Cell
, vol.132
, pp. 27-42
-
-
Levine, B.1
-
47
-
-
79958135926
-
Molecular signatures database (MSigDB) 3.0
-
Liberzon, A. et al. (2011) Molecular signatures database (MSigDB) 3.0. Bioinformatics, 27, 1739-1740.
-
(2011)
Bioinformatics
, vol.27
, pp. 1739-1740
-
-
Liberzon, A.1
-
48
-
-
33947180511
-
The p53 knowledgebase: An integrated information resource for p53 research
-
Lim, Y.P. et al. (2007) The p53 knowledgebase: an integrated information resource for p53 research. Oncogene, 26, 1517-1521.
-
(2007)
Oncogene
, vol.26
, pp. 1517-1521
-
-
Lim, Y.P.1
-
49
-
-
54449083925
-
Molecular targeted therapies in hepatocellular carcinoma
-
Llovet, J.M. et al. (2008) Molecular targeted therapies in hepatocellular carcinoma. Hepatology, 48, 1312-1327.
-
(2008)
Hepatology
, vol.48
, pp. 1312-1327
-
-
Llovet, J.M.1
-
50
-
-
79954504876
-
COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method
-
Ma, H. et al. (2011) COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method. Bioinformatics, 27, 1290-1298.
-
(2011)
Bioinformatics
, vol.27
, pp. 1290-1298
-
-
Ma, H.1
-
51
-
-
15744386871
-
Nuclear receptors as targets for drug development: Regulation of cholesterol and bile acid metabolism by nuclear receptors
-
Makishima, M. et al. (2005) Nuclear receptors as targets for drug development: regulation of cholesterol and bile acid metabolism by nuclear receptors. J. Pharmacol. Sci., 97, 177-183.
-
(2005)
J. Pharmacol. Sci.
, vol.97
, pp. 177-183
-
-
Makishima, M.1
-
52
-
-
39149143293
-
A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
-
Mani, K.M. et al. (2008) A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas. Mol. Syst. Biol., 4, 169.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 169
-
-
Mani, K.M.1
-
53
-
-
77950910419
-
Revealing strengths and weaknesses of methods for gene network inference
-
Marbach, D. et al. (2010) Revealing strengths and weaknesses of methods for gene network inference. Proc. Natl. Acad. Sci. USA, 107, 6286-6291.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 6286-6291
-
-
Marbach, D.1
-
54
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin, A.A. et al. (2006) ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics, 7, S7.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Margolin, A.A.1
-
55
-
-
33744962967
-
Functional inhibitory cross-talk between constitutive andros-tane receptor and hepatic nuclear factor-4 in hepatic lipid/glucose metabolism is mediated by competition for binding to the dr1 motif and to the common coactivators, GRIP-1 and PGC-1alpha
-
Miao, J. et al. (2006) Functional inhibitory cross-talk between constitutive andros-tane receptor and hepatic nuclear factor-4 in hepatic lipid/glucose metabolism is mediated by competition for binding to the dr1 motif and to the common coactivators, GRIP-1 and PGC-1alpha. J. Biol. Chem., 281, 14537-14546.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 14537-14546
-
-
Miao, J.1
-
56
-
-
77957762687
-
SIRT4 regulates fatty acid oxidation and mitochondrial gene expression in liver and muscle cells
-
Nargis, N. et al. (2010) SIRT4 regulates fatty acid oxidation and mitochondrial gene expression in liver and muscle cells. J. Biol. Chem., 285, 31995-32002.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 31995-32002
-
-
Nargis, N.1
-
57
-
-
36349030394
-
Regulation of insulin secretion by SIRT4, a mitochondrial ADP-ribosyltransferase
-
Nidhi, A. et al. (2007) Regulation of insulin secretion by SIRT4, a mitochondrial ADP-ribosyltransferase. J. Biol. Chem., 282, 33583-33592.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 33583-33592
-
-
Nidhi, A.1
-
58
-
-
84856882105
-
Ranking differential hubs in gene co-expression networks
-
Odibat, O. et al. (2012) Ranking differential hubs in gene co-expression networks. J. Bioinform. Comput. Biol., 10, 1240002.
-
(2012)
J. Bioinform. Comput. Biol.
, vol.10
, pp. 1240002
-
-
Odibat, O.1
-
59
-
-
13444249955
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Parkinson, H. et al. (2005) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 33, D553-D555.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Parkinson, H.1
-
60
-
-
33745158657
-
Human hepatocyte culture
-
Pichard, L. et al. (2006) Human hepatocyte culture. Methods Mol. Biol., 320, 283-293.
-
(2006)
Methods Mol. Biol.
, vol.320
, pp. 283-293
-
-
Pichard, L.1
-
61
-
-
12344280017
-
Summaries of affymetrix genechip probe level data
-
Rafael, A. et al. (2003) Summaries of affymetrix genechip probe level data. Nucleic Acids Res., 31, e15.
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Rafael, A.1
-
62
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
Ravasi, T. et al. (2010) An atlas of combinatorial transcriptional regulation in mouse and man. Cell, 140, 744-752.
-
(2010)
Cell
, vol.140
, pp. 744-752
-
-
Ravasi, T.1
-
63
-
-
0034939632
-
Peroxisomal beta-oxidation and peroxisome proliferator-activated receptor alpha: An adaptive metabolic system
-
Reddy, J. et al. (2001) Peroxisomal beta-oxidation and peroxisome proliferator-activated receptor alpha: an adaptive metabolic system. Annu. Rev. Nutr., 21, 193-230.
-
(2001)
Annu. Rev. Nutr.
, vol.21
, pp. 193-230
-
-
Reddy, J.1
-
64
-
-
33749988857
-
Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer
-
Reverter, A. et al. (2006) Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer. Bioinformatics, 22, 2396-2404.
-
(2006)
Bioinformatics
, vol.22
, pp. 2396-2404
-
-
Reverter, A.1
-
65
-
-
0037327003
-
The orphan nuclear receptor HNF4alpha determines PXR-and CAR-mediated xenobiotic induction of CYP3A4
-
Rommel, G. et al. (2003) The orphan nuclear receptor HNF4alpha determines PXR-and CAR-mediated xenobiotic induction of CYP3A4. Nat. Med., 9, 220-224.
-
(2003)
Nat. Med.
, vol.9
, pp. 220-224
-
-
Rommel, G.1
-
66
-
-
0037899935
-
Improving the evaluation of new cancer treatments: Challenges and opportunities
-
Rothenberg, M.L. et al. (2003) Improving the evaluation of new cancer treatments: challenges and opportunities. Nat. Rev. Cancer, 3, 303-309.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 303-309
-
-
Rothenberg, M.L.1
-
67
-
-
80051692878
-
Comparing signaling networks between normal and transformed hepatocytes using discrete logical models
-
Saez-Rodriguez, J. et al. (2011) Comparing signaling networks between normal and transformed hepatocytes using discrete logical models. Cancer Res., 71, 5400-5411.
-
(2011)
Cancer Res.
, vol.71
, pp. 5400-5411
-
-
Saez-Rodriguez, J.1
-
68
-
-
84856327481
-
Graphite-a bioconductor package to convert pathway topology to gene network
-
Sales, G. et al. (2012) graphite-a bioconductor package to convert pathway topology to gene network. BMC Bioinformatics, 13, 20.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 20
-
-
Sales, G.1
-
69
-
-
77952888745
-
Role of Esrrg in the fibrate-mediated regulation of lipid metabolism genes in human ApoA-I transgenic mice
-
Sanoudou, D. et al. (2010) Role of Esrrg in the fibrate-mediated regulation of lipid metabolism genes in human ApoA-I transgenic mice. Pharmacogenomics J., 10, 165-179.
-
(2010)
Pharmacogenomics J.
, vol.10
, pp. 165-179
-
-
Sanoudou, D.1
-
70
-
-
51349092391
-
Network-based prediction of human tissue-specific metabolism
-
Shlomi, T. et al. (2008) Network-based prediction of human tissue-specific metabolism. Nat. Biotechnol., 26, 1003-1010.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1003-1010
-
-
Shlomi, T.1
-
71
-
-
57049127028
-
The transcriptomic signature of fasting murine liver
-
Sokolovic, M. et al. (2008) The transcriptomic signature of fasting murine liver. BMC Genomics, 9, 528.
-
(2008)
BMC Genomics
, vol.9
, pp. 528
-
-
Sokolovic, M.1
-
72
-
-
34547844096
-
Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: Synthetic versus real data
-
Soranzo, N. et al. (2007) Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data. Bioinformatics, 23, 1640-1647.
-
(2007)
Bioinformatics
, vol.23
, pp. 1640-1647
-
-
Soranzo, N.1
-
73
-
-
75149195336
-
The transcriptional network for mesenchymal transformation of brain tumours
-
Stella, M. et al. (2010) The transcriptional network for mesenchymal transformation of brain tumours. Nature, 463, 318-325.
-
(2010)
Nature
, vol.463
, pp. 318-325
-
-
Stella, M.1
-
74
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su, A.I. et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl Acad. Sci. USA, 101, 6062-6067.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
-
75
-
-
80054689794
-
An extensive MicroRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
Sumazin, P. et al. (2011) An extensive MicroRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell, 147, 370-381.
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
-
76
-
-
1342286116
-
Renal metabolism of amino acids: Its role in interorgan amino acid exchange
-
van de Poll, M. et al. (2004) Renal metabolism of amino acids: its role in interorgan amino acid exchange. Am. J. Clin. Nutr., 79, 185-197.
-
(2004)
Am. J. Clin. Nutr.
, vol.79
, pp. 185-197
-
-
Van De Poll, M.1
-
77
-
-
34548506266
-
Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting
-
van den Bosch, H. et al. (2007) Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting. BMC Genomics, 8, 267.
-
(2007)
BMC Genomics
, vol.8
, pp. 267
-
-
Van Den Bosch, H.1
-
78
-
-
84880225653
-
Molecular mechanisms underlying the link between nuclear receptor function and cholesterol gallstone formation
-
Vazquez, M. et al. (2012) Molecular mechanisms underlying the link between nuclear receptor function and cholesterol gallstone formation. J. Lipids, 2012, 547643.
-
(2012)
J. Lipids
, vol.2012
, pp. 547643
-
-
Vazquez, M.1
-
79
-
-
57749113198
-
Human ATAC is a GCN5/PCAF-containing acetylase complex with a novel NC2-like histone fold module that interacts with the TATA-binding protein
-
Wang, Y. et al. (2008) Human ATAC is a GCN5/PCAF-containing acetylase complex with a novel NC2-like histone fold module that interacts with the TATA-binding protein. J. Biol. Chem., 283, 33808-33815.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 33808-33815
-
-
Wang, Y.1
-
80
-
-
34547649056
-
CoXpress: Differential co-expression in gene expression data
-
Watson, M. et al. (2006) CoXpress: differential co-expression in gene expression data. BMC Bioinformatics, 7, 509.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 509
-
-
Watson, M.1
-
81
-
-
33750460197
-
Developing gene expression signatures of pathway deregulation in tumors
-
Watters, J.W. et al. (2006) Developing gene expression signatures of pathway deregulation in tumors. Mol. Cancer Ther., 5, 2444-2449.
-
(2006)
Mol. Cancer Ther.
, vol.5
, pp. 2444-2449
-
-
Watters, J.W.1
-
82
-
-
76249090489
-
BioGPS: An extensible and customizable portal for querying and organizing gene annotation resources
-
Wu, C. et al. (2009) BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol., 10, R130.
-
(2009)
Genome Biol.
, vol.10
-
-
Wu, C.1
-
83
-
-
43249114206
-
Network-based global inference of human disease genes
-
Xuebing, W. et al. (2008) Network-based global inference of human disease genes. Mol. Syst. Biol., 4, 189.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 189
-
-
Xuebing, W.1
-
84
-
-
79251573840
-
Regulation of microsomal triglyceride transfer protein by apolipoprotein A-IV in newborn swine intestinal epithelial cells
-
Yao, Y. et al. (2011) Regulation of microsomal triglyceride transfer protein by apolipoprotein A-IV in newborn swine intestinal epithelial cells. Am. J. Physiol. Gastrointest. Liver Physiol., 300, G357-G363.
-
(2011)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.300
-
-
Yao, Y.1
-
85
-
-
10244219943
-
A statistical method for identifying differential gene-gene co-expression patterns
-
Yinglei, L. et al. (2004) A statistical method for identifying differential gene-gene co-expression patterns. Bioinformatics, 20, 3146-3155.
-
(2004)
Bioinformatics
, vol.20
, pp. 3146-3155
-
-
Yinglei, L.1
-
86
-
-
0035855858
-
Control of hepatic gluconeogenesis through the transcrip-tional coactivator PGC-1
-
Yoon, J.C. et al. (2001) Control of hepatic gluconeogenesis through the transcrip-tional coactivator PGC-1. Nature, 413, 131-138.
-
(2001)
Nature
, vol.413
, pp. 131-138
-
-
Yoon, J.C.1
|