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Volumn 7, Issue , 2006, Pages

CoXpress: Differential co-expression in gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

CO-EXPRESSION; DIFFERENTIALLY EXPRESSED GENE; EXPERIMENTAL CONDITIONS; GENE EXPRESSION DATA; HIGHLY-CORRELATED; MICROARRAY DATA SETS; RESAMPLING METHOD; SOFTWARE USE;

EID: 34547649056     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-509     Document Type: Article
Times cited : (133)

References (23)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M, Shalon D, Davis RW, Brown PO: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270:467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: Gene expression data analysis comes of age
    • Slonim D: From patterns to pathways: gene expression data analysis comes of age. Nat Genet 2002, 32(Suppl):502-508.
    • (2002) Nat Genet , vol.32 , Issue.SUPPL. , pp. 502-508
    • Slonim, D.1
  • 3
    • 1242300778 scopus 로고    scopus 로고
    • Microarray Bioinformatics
    • Cambridge University Press
    • Stekel D: Microarray Bioinformatics. Cambridge University Press; 2003.
    • (2003)
    • Stekel, D.1
  • 6
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of microarray data
    • Quackenbush J: Computational analysis of microarray data. Nat Rev Genet 2001, 2(6):318-27.
    • (2001) Nat Rev Genet , vol.2 , Issue.6 , pp. 318-327
    • Quackenbush, J.1
  • 7
    • 4844229238 scopus 로고    scopus 로고
    • From co-expression to co-regulation: How many microarray experiments do we need?
    • Yeung KY, Medvedovic M, Bumgarner RE: From co-expression to co-regulation: how many microarray experiments do we need? Genome Biol 2004, 5(7):R48.
    • (2004) Genome Biol , vol.5 , Issue.7
    • Yeung, K.Y.1    Medvedovic, M.2    Bumgarner, R.E.3
  • 8
    • 0034782618 scopus 로고    scopus 로고
    • Model-based clustering and data transformations for gene expression data
    • Yeung KY, Fraley C, Murua A, Raftery AE, Ruzzo WL: Model-based clustering and data transformations for gene expression data. Bioinformatics 2001, 17(10):977-87.
    • (2001) Bioinformatics , vol.17 , Issue.10 , pp. 977-987
    • Yeung, K.Y.1    Fraley, C.2    Murua, A.3    Raftery, A.E.4    Ruzzo, W.L.5
  • 9
    • 0037168518 scopus 로고    scopus 로고
    • Genome-wide coexpression dynamics: Theory and application
    • Li KC: Genome-wide coexpression dynamics: Theory and application. Proc Nat Acad Sci USA 2002, 99(26):16875-80.
    • (2002) Proc Nat Acad Sci USA , vol.99 , Issue.26 , pp. 16875-16880
    • Li, K.C.1
  • 10
    • 10244219943 scopus 로고    scopus 로고
    • A statistical method for identifying differential gene-gene co-expression patterns
    • Lai Y, Wu B, Chen L, Zhao H: A statistical method for identifying differential gene-gene co-expression patterns. Bioinformatics 2004, 20(17):3146-55.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3146-3155
    • Lai, Y.1    Wu, B.2    Chen, L.3    Zhao, H.4
  • 11
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human genes across many microarray data sets. Genome Res 2004, 14(6):1085-94.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1085-1094
    • Lee, H.K.1    Hsu, A.K.2    Sajdak, J.3    Qin, J.4    Pavlidis, P.5
  • 12
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • Stuart JM, Segal E, Koller D, Kim SK: A gene-coexpression network for global discovery of conserved genetic modules. Science 2003, 302(5643):249-55.
    • (2003) Science , vol.302 , Issue.5643 , pp. 249-255
    • Stuart, J.M.1    Segal, E.2    Koller, D.3    Kim, S.K.4
  • 13
    • 28944444652 scopus 로고    scopus 로고
    • Differential coexpression analysis using microarray data and its application to human cancer
    • Choi JK, Yu U, Yoo OJ, Kim S: Differential coexpression analysis using microarray data and its application to human cancer. Bioinformatics 2005, 21(24):4348-55.
    • (2005) Bioinformatics , vol.21 , Issue.24 , pp. 4348-4355
    • Choi, J.K.1    Yu, U.2    Yoo, O.J.3    Kim, S.4
  • 14
    • 21044446187 scopus 로고    scopus 로고
    • Finding disease specific alterations in the co-expression of genes
    • Kostka D, Spang R: Finding disease specific alterations in the co-expression of genes. Bioinformatics 2004, 20(Suppl 1):1194-1199.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1 , pp. 1194-1199
    • Kostka, D.1    Spang, R.2
  • 16
    • 84874652679 scopus 로고    scopus 로고
    • R
    • R [http://www.r-project.org]
  • 18
    • 84874654927 scopus 로고    scopus 로고
    • Bioconductor
    • Bioconductor [http://www.bioconductor.org]
  • 19
    • 1342288026 scopus 로고    scopus 로고
    • Affy: Analysis of Affymetrix GeneChip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA: affy: analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20(3):307-15.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 20
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK: Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004, 3(1):Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3 , Issue.1
    • Smyth, G.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.