-
1
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B, 57, 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
2
-
-
1842526076
-
Active repression of antiapoptotic gene expression by RelA (p65) NF-kappa B
-
Campbell,K.J., Rocha,S. and Perkins,N.D. (2004) Active repression of antiapoptotic gene expression by RelA (p65) NF-kappa B. Mol. Cell, 13, 853-865.
-
(2004)
Mol. Cell
, vol.13
, pp. 853-865
-
-
Campbell, K.J.1
Rocha, S.2
Perkins, N.D.3
-
3
-
-
0037313618
-
Coordinated regulation of life and death by RB
-
Chau,B.N. and Wang,J.Y.J. (2003) Coordinated regulation of life and death by RB. Nat. Rev. Cancer, 3, 130-138.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 130-138
-
-
Chau, B.N.1
Wang, J.Y.J.2
-
4
-
-
0036549767
-
Discordant protein and mRNA expression in lung adenocarcinomas
-
Chen,G.A., Gharib,T.G., Huang,C.C., Taylor,J.M.G., Misek,D.E., Kardia,S.L.R., Giordano,T.J., Iannettoni,M.D., Orringer,M.B., Hanash,S.M. and Beer,D.G. (2002) Discordant protein and mRNA expression in lung adenocarcinomas. Mol. Cell. Proteomics, 1, 304-313.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 304-313
-
-
Chen, G.A.1
Gharib, T.G.2
Huang, C.C.3
Taylor, J.M.G.4
Misek, D.E.5
Kardia, S.L.R.6
Giordano, T.J.7
Iannettoni, M.D.8
Orringer, M.B.9
Hanash, S.M.10
Beer, D.G.11
-
5
-
-
0043194165
-
Shrinkage-based similarity metric for cluster analysis of microarray data
-
Cherepinsky,V., Feng,J.W., Rejali,M. and Mishra,B. (2003) Shrinkage-based similarity metric for cluster analysis of microarray data. Proc. Natl Acad. Sci. USA, 100, 9668-9673.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9668-9673
-
-
Cherepinsky, V.1
Feng, J.W.2
Rejali, M.3
Mishra, B.4
-
6
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B., Spellman,P.T., Brown,P.O. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci., USA, 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
7
-
-
0242523090
-
Human prostate cancer precursors and pathobiology
-
DeMarzo,A.M., Meeker,A.K., Zha,S., Luo,J., Nakayama,M., Platz,E.A., Isaacs,W.B. and Nelson,W.G. (2003a) Human prostate cancer precursors and pathobiology. Urology, 62 (Suppl. 5A), 55-62.
-
(2003)
Urology
, vol.62
, Issue.SUPPL. 5A
, pp. 55-62
-
-
DeMarzo, A.M.1
Meeker, A.K.2
Zha, S.3
Luo, J.4
Nakayama, M.5
Platz, E.A.6
Isaacs, W.B.7
Nelson, W.G.8
-
8
-
-
0037444031
-
Pathological and molecular aspects of prostate cancer
-
DeMarzo,A.M., Nelson,W.G., Isaacs,W.B. and Epstein,J.I. (2003b) Pathological and molecular aspects of prostate cancer. Lancet 361, 955-964.
-
(2003)
Lancet
, vol.361
, pp. 955-964
-
-
DeMarzo, A.M.1
Nelson, W.G.2
Isaacs, W.B.3
Epstein, J.I.4
-
9
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi,J.L., Iyer,V.R. and Brown,P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
10
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub,T.R., Slonim,D.K., Tamayo,P., Huard,C., Gaasenbeek,M., Mesirov,J.P., Coller,H., Loh,M.L., Downing,J.R., Caligiuri,M.A., Bloomfield,C.D. and Lander,E.S. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 286, 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
11
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi,S.P., Rochon,Y., Franza,B.R. and Aebersold,R. (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol., 19, 1720-1730.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
12
-
-
0036561908
-
Modelling the molecular circuitry of cancer
-
Hahn,W.C. and Weinberg,R.A. (2002) Modelling the molecular circuitry of cancer. Nat. Rev. Cancer, 2, 331-341.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 331-341
-
-
Hahn, W.C.1
Weinberg, R.A.2
-
13
-
-
0030699475
-
Yeast microarrays for genome wide parallel genetic and gene expression analysis
-
Lashkari,D.A., DeRisi,J.L., McCusker,J.H., Namath,A.F., Gentile,C., Hwang,S.Y., Brown,P.O. and Davis,R.W. (1997) Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc. Natl Acad. Sci., USA, 94, 13057-13062.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13057-13062
-
-
Lashkari, D.A.1
DeRisi, J.L.2
McCusker, J.H.3
Namath, A.F.4
Gentile, C.5
Hwang, S.Y.6
Brown, P.O.7
Davis, R.W.8
-
14
-
-
0037168518
-
Genome-wide co-expression dynamics: Theory and application
-
Li,K.C. (2002) Genome-wide co-expression dynamics: theory and application. Proc. Natl Acad. Sci., USA, 99, 16875-16880.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16875-16880
-
-
Li, K.C.1
-
15
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte,E.M., Pellegrini,M., Thompson,M.J., Yeates,T.O. and Eisenberg,D. (1999) A combined algorithm for genome-wide prediction of protein function. Nature, 402, 83-86.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
16
-
-
0000541109
-
An extension of Shapiro and Wilk's W test for normality to large samples
-
Royston,J.P. (1982) An extension of Shapiro and Wilk's W test for normality to large samples. Appl. Stat., 31, 115-124.
-
(1982)
Appl. Stat.
, vol.31
, pp. 115-124
-
-
Royston, J.P.1
-
17
-
-
0037012476
-
α-Methylacyl coenzyme A racemase as a tissue biomarker for prostate cancer
-
Rubin,M.A., Zhou,M., Dhanasekaran,S.M., Varambally,S., Barrette,T.R., Sanda,M.G., Pienta,K.J., Ghosh,D. and Chinnaiyan,A.M. (2002) α-Methylacyl coenzyme A racemase as a tissue biomarker for prostate cancer. JAMA, 287, 1662-1670.
-
(2002)
JAMA
, vol.287
, pp. 1662-1670
-
-
Rubin, M.A.1
Zhou, M.2
Dhanasekaran, S.M.3
Varambally, S.4
Barrette, T.R.5
Sanda, M.G.6
Pienta, K.J.7
Ghosh, D.8
Chinnaiyan, A.M.9
-
18
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena,M., Shalon,D., Davis,R.W. and Brown,P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
19
-
-
0000898845
-
An analysis of variance test for normality
-
(complete samples)
-
Shapiro,S.S. and Wilk,M.B. (1965) An analysis of variance test for normality (complete samples). Biometrika, 52, 591-611.
-
(1965)
Biometrika
, vol.52
, pp. 591-611
-
-
Shapiro, S.S.1
Wilk, M.B.2
-
20
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
Singh,D., Febbo,P.G., Ross,K., Jackson,D.G., Manola,J., Ladd,C., Tamayo,P., Renshaw,A.A., D'Amico,A.V., Richie,J.P. et al. (2002) Gene expression correlates of clinical prostate cancer behavior. Cancer Cell, 1, 203-209.
-
(2002)
Cancer Cell
, vol.1
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
-
21
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman,P.T., Sherlock,G., Zhang,M.Q., Iyer,V.R., Anders,K., Eisen,M.B., Brown,P.O., Botstein,D. and Futcher,B. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
22
-
-
10744220367
-
Hepsin is highly over expressed in and a new candidate for a prognostic indicator in prostate cancer
-
Stephan,C., Yousef,G.M., Scorilas,A., Jung,K., Jung,M., Kristiansen,G., Hauptmann,S., Kishi,T., Nakamura,T., Loening,S.A. and Diamandis,E.P. (2004) Hepsin is highly over expressed in and a new candidate for a prognostic indicator in prostate cancer. J. Urol., 171, 187-191.
-
(2004)
J. Urol.
, vol.171
, pp. 187-191
-
-
Stephan, C.1
Yousef, G.M.2
Scorilas, A.3
Jung, K.4
Jung, M.5
Kristiansen, G.6
Hauptmann, S.7
Kishi, T.8
Nakamura, T.9
Loening, S.A.10
Diamandis, E.P.11
-
23
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher,V.G., Tibshirani,R. and Chu,G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 98, 5116-5121.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
24
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer,L.J., Dai,H.Y., van de VijverM.J., He,Y.D.D., Hart,A.A.M., Mao,M., Peterse,H.L., van der Kooy,K., Marton,M.J., Witteveen,A.T. et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature, 415, 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.Y.2
van de Vijver, M.J.3
He, Y.D.D.4
Hart, A.A.M.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
25
-
-
0242523099
-
The molecular genetics of prostate cancer
-
Visakorpi,T. (2003) The molecular genetics of prostate cancer. Urology, 62 (Suppl. 5A), 3-10.
-
(2003)
Urology,
, vol.62
, Issue.SUPPL. 5A
, pp. 3-10
-
-
Visakorpi, T.1
-
26
-
-
0036674617
-
Live or let die: The cell's response to p53
-
Vousden,K.H. and Lu,X. (2002) Live or let die: the cell's response to p53. Nat. Rev. Cancer, 2, 594-604.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 594-604
-
-
Vousden, K.H.1
Lu, X.2
-
27
-
-
0037453060
-
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
-
Washburn,M.P., Koller,A., Oshiro,G., Ulaszek,R.R., Plouffe,D., Deciu,C., Winzeler,E. and Yates,J.R.,III, (2003) Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc. Natl Acad. Sci., USA, 100, 3107-3112.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3107-3112
-
-
Washburn, M.P.1
Koller, A.2
Oshiro, G.3
Ulaszek, R.R.4
Plouffe, D.5
Deciu, C.6
Winzeler, E.7
Yates III, J.R.8
-
28
-
-
1842536849
-
Mutant p53 exerts a dominant negative effect by preventing wild-type p53 from binding to the promoter of its target genes
-
Willis,A., Jung,E.J., Wakefield,T. and Chen,X.B. (2004) Mutant p53 exerts a dominant negative effect by preventing wild-type p53 from binding to the promoter of its target genes. Oncogene, 23 2330-2338.
-
(2004)
Oncogene
, vol.23
, pp. 2330-2338
-
-
Willis, A.1
Jung, E.J.2
Wakefield, T.3
Chen, X.B.4
|