-
1
-
-
0036144678
-
Global gene expression analysis of gastric cancer by oligonucleotide microarrays
-
Hippo Y, Taniguchi H, Tsutsumi S et al, Global gene expression analysis of gastric cancer by oligonucleotide microarrays, Cancer Res 62:233-240, 2002. (Pubitemid 34074010)
-
(2002)
Cancer Research
, vol.62
, Issue.1
, pp. 233-240
-
-
Hippo, Y.1
Taniguchi, H.2
Tsutsumi, S.3
Machida, N.4
Chong, J.-M.5
Fukayama, M.6
Kodama, T.7
Aburatani, H.8
-
2
-
-
77950840239
-
Subspace differential coexpression analysis: Problem definition and a general approach
-
Fang G, Kuang R, Pandey G et al, Subspace differential coexpression analysis: Problem definition and a general approach, Pac Symp Biocomput pp. 145-156, 2010.
-
(2010)
Pac Symp Biocomput
, pp. 145-156
-
-
Fang, G.1
Kuang, R.2
Pandey, G.3
-
3
-
-
77958039846
-
Differential biclustering for gene expression analysis
-
Niagara Falls, NY, USA
-
Odibat O, Reddy CK, Giroux CN, Differential biclustering for gene expression analysis, Proc. ACM Conference on Bioinformatics and Computational Biology (BCB), Niagara Falls, NY, USA, pp. 275-284, 2010.
-
(2010)
Proc. ACM Conference on Bioinformatics and Computational Biology (BCB)
, pp. 275-284
-
-
Odibat, O.1
Reddy, C.K.2
Giroux, C.N.3
-
4
-
-
77950544798
-
A statistical framework for differential network analysis from microarray data
-
Gill R, Datta S, Datta S, A statistical framework for differential network analysis from microarray data, BMC Bioinformatics 11:95, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 95
-
-
Gill, R.1
Datta, S.2
Datta, S.3
-
5
-
-
34548442971
-
Weighted gene coexpression network analysis strategies applied to mouse weight
-
DOI 10.1007/s00335-007-9043-3
-
Fuller TF, Ghazalpour A, Aten JE et al., Weighted gene coexpression network analysis strategies applied to mouse weight, Mamm Genome 18:463-472, 2007. (Pubitemid 47360423)
-
(2007)
Mammalian Genome
, vol.18
, Issue.6-7
, pp. 463-472
-
-
Fuller, T.F.1
Ghazalpour, A.2
Aten, J.E.3
Drake, T.A.4
Lusis, A.J.5
Horvath, S.6
-
6
-
-
60149089400
-
Differential dependency network analysis to identify condition-specific topological changes in biological networks
-
Zhang B, Li H, Riggins RB et al., Differential dependency network analysis to identify condition-specific topological changes in biological networks, Bioinformatics 25:526-532, 2009.
-
(2009)
Bioinformatics
, vol.25
, pp. 526-532
-
-
Zhang, B.1
Li, H.2
Riggins, R.B.3
-
7
-
-
77953913791
-
A from 'differential expression' to 'differential networking' identification of dysfunctional regulatory networks in diseases
-
de la Fuente A, From 'differential expression' to 'differential networking' identification of dysfunctional regulatory networks in diseases, Trends Genet 26:326-333, 2010.
-
(2010)
Trends Genet
, vol.26
, pp. 326-333
-
-
De La Fuente1
-
8
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
DOI 10.1073/pnas.091062498
-
Tusher VG, Tibshirani R, Chu G, Significance analysis of microarrays applied to the ionizing radiation response, PNAS 98:5116-5121, 2001. (Pubitemid 32397092)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.9
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
9
-
-
46249103142
-
Differential variability analysis of gene expression and its application to human diseases
-
DOI 10.1093/bioinformatics/btn142
-
Ho JW, Stefani M, dos Remedios CG et al, Differential variability analysis of gene expression and its application to human diseases, Bioinformatics 24:i390-398, 2008. (Pubitemid 351911695)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
-
-
Ho, J.W.K.1
Stefani, M.2
Dos Remedios, C.G.3
Charleston, M.A.4
-
10
-
-
33846672214
-
Biological network comparison using graphlet degree distribution
-
DOI 10.1093/bioinformatics/btl301
-
Pržulj N, Biological network comparison using graphlet degree distribution, Bioinformatics 23:e177-e183, 2007. (Pubitemid 46189654)
-
(2007)
Bioinformatics
, vol.23
, Issue.2
-
-
Przulj, N.1
-
11
-
-
33749988857
-
Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer
-
DOI 10.1093/bioinformatics/btl392
-
Reverter A, Ingham A, Lehnert SA et al, Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer, Bioinformatics 22:2396-2404, 2006. (Pubitemid 44566969)
-
(2006)
Bioinformatics
, vol.22
, Issue.19
, pp. 2396-2404
-
-
Reverter, A.1
Ingham, A.2
Lehnert, S.A.3
Tan, S.-H.4
Wang, Y.5
Ratnakumar, A.6
Dalrymple, B.P.7
-
12
-
-
67049159812
-
A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation
-
Hudson NJ, Reverter A, Dalrymple BP, A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation, PLoS Comput Biol 5: e1000382, 2009.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Hudson, N.J.1
Reverter, A.2
Dalrymple, B.P.3
-
13
-
-
44649135292
-
Reconstructing networks of pathways via significance analysis of their intersections
-
Francesconi M, Remondini D, Neretti N et al, Reconstructing networks of pathways via significance analysis of their intersections, BMC Bioinformatics 9:S9, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Francesconi, M.1
Remondini, D.2
Neretti, N.3
-
14
-
-
84865730611
-
A set of measures of centrality based on betweenness
-
Freeman LC, A set of measures of centrality based on betweenness, Sociometry 40:35-41, 1977.
-
(1977)
Sociometry
, vol.40
, pp. 35-41
-
-
Freeman, L.C.1
-
15
-
-
0041848443
-
Topic-Sensitive PageRank: A context-sensitive ranking algorithm for web search
-
Haveliwala TH, Topic-Sensitive PageRank: A context-sensitive ranking algorithm for web search, IEEE Trans Knowl Data Eng 15:784-796, 2003.
-
(2003)
IEEE Trans Knowl Data Eng
, vol.15
, pp. 784-796
-
-
Haveliwala, T.H.1
-
17
-
-
78651275635
-
Fast and accurate estimation of shortest paths in large graphs
-
Toronto, ON, Canada
-
Gubichev A, Bedathur S, Seufert S et al., Fast and accurate estimation of shortest paths in large graphs, Proc. 19th ACM Int. Conf. Information and Knowledge Management, Toronto, ON, Canada, pp. 499-508, 2010.
-
(2010)
Proc. 19th ACM Int. Conf. Information and Knowledge Management
, pp. 499-508
-
-
Gubichev, A.1
Bedathur, S.2
Seufert, S.3
-
18
-
-
84857368128
-
Mining differential hubs in homogenous networks
-
San Diego, CA, USA
-
Odibat O, Reddy CK, Mining differential hubs in homogenous networks, Proc. Ninth Workshop on Mining and Learning with Graphs, San Diego, CA, USA, 2011.
-
(2011)
Proc. Ninth Workshop on Mining and Learning with Graphs
-
-
Odibat, O.1
Reddy, C.K.2
-
19
-
-
0003780986
-
-
Technical Report, Stanford University
-
Page L, Brin S, Motwani R et al, The PageRank citation ranking: Bringing order to the web, Technical Report, Stanford University, 1998.
-
(1998)
The PageRank Citation Ranking: Bringing Order to the Web
-
-
Page, L.1
Brin, S.2
Motwani, R.3
-
20
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi AL, Albert R, Emergence of scaling in random networks, Science 286:509-512, 1999.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
21
-
-
33845475442
-
Automatic evaluation of information ordering: Kendall's Tau
-
DOI 10.1162/coli.2006.32.4.471
-
Lapata M, Automatic evaluation of information ordering: Kendall's Tau, Comput Linguistics 32:471-484, 2006. (Pubitemid 44916186)
-
(2006)
Computational Linguistics
, vol.32
, Issue.4
, pp. 471-484
-
-
Lapata, M.1
-
22
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P et al, Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring, Science 286:531-537, 1999.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
-
23
-
-
0034794796
-
Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease
-
DOI 10.1038/ng731
-
Macdonald TJ, Brown KM, Lafleur B et al, Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease, Nat Genet 29:143-152, 2001. (Pubitemid 32952650)
-
(2001)
Nature Genetics
, vol.29
, Issue.2
, pp. 143-152
-
-
MacDonald, T.J.1
Brown, K.M.2
Lafleur, B.3
Peterson, K.4
Lawlor, C.5
Chen, Y.6
Packer, R.J.7
Cogen, P.8
Stephan, D.A.9
-
24
-
-
69749086899
-
Identification of rare cancer driver mutations by network reconstruction
-
Torkamani A, Schork NJ, Identification of rare cancer driver mutations by network reconstruction, Genome Res 19:1570-1578, 2009.
-
(2009)
Genome Res
, vol.19
, pp. 1570-1578
-
-
Torkamani, A.1
Schork, N.J.2
-
25
-
-
77649168721
-
A general co-expression network-based approach to gene expression analysis: Comparison and applications
-
Ruan J, Dean AK, Zhang W, A general co-expression network-based approach to gene expression analysis: Comparison and applications, BMC Sys Biol 4:8, 2010.
-
(2010)
BMC Sys Biol
, vol.4
, pp. 8
-
-
Ruan, J.1
Dean, A.K.2
Zhang, W.3
-
26
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W, Sherman BT, Lempicki RA, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nat Protoc 4:44-57, 2009.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
27
-
-
62849126285
-
Disease candidate gene identification and prioritization using protein interaction networks
-
Chen J, Aronow BJ, Jegga AG, Disease candidate gene identification and prioritization using protein interaction networks, BMC Bioinformatics 10:73, 2009.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 73
-
-
Chen, J.1
Aronow, B.J.2
Jegga, A.G.3
|