A gene atlas of the mouse and human protein-encoding transcriptomes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 16, 2004, Pages 6062-6067

  Su, Andrew I ^a   Wiltshire, Tim ^a   Batalov, Serge ^a   Lapp, Hilmar ^a   Ching, Keith A ^a   Block, David ^a   Zhang, Jie ^a   Soden, Richard ^a   Hayakawa, Mimi ^a   Kreiman, Gabriel ^a,c   Cooke, Michael P ^a   Walker, John R ^a   Hogenesch, John B ^a,b  

^a GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALLELE; ANIMAL TISSUE; ARTICLE; CHROMOSOME STRUCTURE; CONTROLLED STUDY; CORRELATION ANALYSIS; DATA ANALYSIS; EVALUATION; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC ANALYSIS; GENETIC CODE; GENETIC LINKAGE; GENETIC TRANSCRIPTION; GENOME IMPRINTING; HUMAN; HUMAN TISSUE; MALE; METHODOLOGY; MOUSE; NONHUMAN; PREDICTION; PRIORITY JOURNAL; SPECIES COMPARISON; STRUCTURE ANALYSIS; TISSUE;

ANIMALS; FEMALE; GENOMIC IMPRINTING; HUMANS; MALE; MICE; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

ANIMALIA; EUKARYOTA; RODENTIA;

EID: 11144358198     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0400782101     Document Type: Article

References (36)

1. Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) Science 291, 1304-1351.
2. Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. (2001) Nature 409, 860-921.
3. Su, A. I., Welsh, J. B., Sapinoso, L. M., Kern, S. G., Dimitrov, P., Lapp, H., Schultz, P. G., Powell, S. M., Moskaluk, C. A., Frierson, H. F., Jr., et al. (2001) Cancer Res. 61, 7388-7393.
4. Aza-Blanc, P., Cooper, C. L., Wagner, K., Batalov, S., Deveraux, Q. L. & Cooke, M. P. (2003) Mol. Cell 12, 627-637.
5. Chanda, S. K., White, S., Orth, A. P., Reisdorph, R., Miraglia, L., Thomas, R. S., DeJesus, P., Mason, D. E., Huang, Q., Vega, R., et al. (2003) Proc. Natl. Acad. Sci. USA 100, 12153-12158.
6. Su, A. I., Cooke, M. P., Ching, K. A., Hakak, Y., Walker, J. R., Wiltshire, T., Orth, A. P., Vega, R. G., Sapinoso, L. M., Moqrich, A., et al. (2002) Proc. Natl. Acad. Sci. USA 99, 4465-4470.
7. Pruitt, K. D. & Maglott, D. R. (2001) Nucleic Acids Res. 29, 137-140.
8. Kerlavage, A., Bonazzi, V., di Tommaso, M., Lawrence, C., Li, P., Mayberry, F., Mural, R., Nodell M. Yandell M. Zhang J. et al. (2002) Nucleic Acids Res. 30, 129-136.
9. Okazaki, Y., Furuno, M., Kasukawa, T., Adachi, J., Bono, H., Kondo, S., Nikaido, I., Osato, N., Saito, R., Suzuki, H., et al. (2002) Nature 420, 563-573.
10. Kent, W. J. (2002) Genome Res. 12, 656-664.
11. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
12. Florea, L., Hartzell, G., Zhang, Z., Rubin, G. M. & Miller, W. (1998) Genome Res. 8, 967-974.
13. Kanapin, A., Batalov, S., Davis, M. J., Gough, J., Grimmond, S., Kawaji, H., Magrane, M., Matsuda, H., Schonbach, C., Teasdale, R. D., et al. (2003) Genome Res. 13, 1335-1344.
14. Lockhart, D. J., Dong, H., Byrne, M. C., Follettie, M. T., Gallo, M. V., Chee, M. S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H., et al. (1996) Nat. Biotechnol. 14, 1675-1680.
15. Hubbell, E., Liu, W. M. & Mei, R. (2002) Bioinformatics 18, 1585-1592.
16. Edgar, R., Domrachev, M. & Lash, A. E. (2002) Nucleic Acids Res. 30, 207-210.
17. Kent, W. J., Baertsch, R., Hinrichs, A., Miller, W. & Haussler, D. (2003) Proc. Natl. Acad. Sci. USA 100, 11484-11489.
18. Bishop, J. O., Morton, J. G., Rosbash, M. & Richardson, M. (1974) Nature 250, 199-204.
19. Hastie, N. D. & Bishop, J. O. (1976) Cell 9, 761-774.
20. Hogenesch, J. B., Ching, K. A., Batalov, S., Su, A. I., Walker, J. R., Zhou, Y., Kay, S. A., Schultz, P. G. & Cooke, M. P. (2001) Cell 106, 413-415.
21. Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H. S., Han, B., Zhu, T., Wang, X., Kreps, J. A. & Kay, S. A. (2000) Science 290, 2110-2113.
22. DeRisi, J. L., Iyer, V. R. & Brown, P. O. (1997) Science 278, 680-686.
23. Li, Q., Peterson, K. R., Fang, X. & Stamatoyannopoulos, G. (2002) Blood 100, 3077-3086.
24. Spellman, P. T. & Rubin, G. M. (2002) J. Biol. 1, 5.
25. Caron, H., van Schaik, B., van der Mee, M., Baas, F., Riggins, G., van Sluis, P., Hermus, M. C., van Asperen, R., Boon, K., Voute, P. A., et al. (2001) Science 291, 1289-1292.
26. Roy, P. J., Stuart, J. M., Lund, J. & Kim, S. K. (2002) Nature 418, 975-979.
27. Cohen, B. A., Mitra, R. D., Hughes, J. D. & Church, G. M. (2000) Nat. Genet. 26, 183-186.
28. Bell, A. C. & Felsenfeld, G. (2000) Nature 405, 482-485.
29. Hark, A. T., Schoenherr, C. J., Katz, D. J., Ingram, R. S., Levorse, J. M. & Tilghman, S. M. (2000) Nature 405, 486-489.
30. Thorvaldsen, J. L., Duran, K. L. & Bartolomei, M. S. (1998) Genes Dev. 12, 3693-3702.
31. Kim, J., Lu, X. & Stubbs, L. (1999) Hum. Mol. Genet. 8, 847-854.
32. Georges, M., Charlier, C. & Cockett, N. (2003) Trends Genet. 19, 248-252.
33. Hatada, I., Morita, S., Obata, Y., Sotomaru, Y., Shimoda, M. & Kono, T. (2001) J. Biochem. 130, 187-190.
34. Cavaille, J., Seitz, H., Paulsen, M., Ferguson-Smith, A. C. & Bachellerie, J. P. (2002) Hum. Mol. Genet. 11, 1527-1538.
35. Yevtodiyenko, A., Carr, M. S., Patel, N. & Schmidt, J. V. (2002) Mamm. Genome 13, 633-638.
36. Seitz, H., Youngson, N., Lin, S. P., Dalbert, S., Paulsen, M., Bachellerie, J. P., Ferguson-Smith, A. C. & Cavaille, J. (2003) Nat. Genet. 34, 261-262.