-
1
-
-
0033561361
-
Animal mitochondrial genome
-
10.1093/nar/27.8.1767, 148383, 10101183
-
Boore JL. Animal mitochondrial genome. Nucleic Acids Res 1999, 27:1767-1780. 10.1093/nar/27.8.1767, 148383, 10101183.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
2
-
-
0344861878
-
Mitochondrial genomes: anything goes
-
10.1016/j.tig.2003.10.012, 14642752
-
Burger G, Gray MW, Lang BF. Mitochondrial genomes: anything goes. Trends Genet 2003, 19:709-716. 10.1016/j.tig.2003.10.012, 14642752.
-
(2003)
Trends Genet
, vol.19
, pp. 709-716
-
-
Burger, G.1
Gray, M.W.2
Lang, B.F.3
-
3
-
-
69149110054
-
Molluscan evolutionary genomics
-
Berkeley: University of California Press, Ponder W, Lindberg DR
-
Simison WB, Boore JL. Molluscan evolutionary genomics. Phylogeny and evolution of the mollusca 2008, 447-461. Berkeley: University of California Press, Ponder W, Lindberg DR.
-
(2008)
Phylogeny and evolution of the mollusca
, pp. 447-461
-
-
Simison, W.B.1
Boore, J.L.2
-
4
-
-
0033978501
-
A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida
-
1460896, 10628979
-
Armstrong MR, Blok VC, Phillips MS. A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida. Genetics 2000, 154:181-192. 1460896, 10628979.
-
(2000)
Genetics
, vol.154
, pp. 181-192
-
-
Armstrong, M.R.1
Blok, V.C.2
Phillips, M.S.3
-
5
-
-
79961011077
-
Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)
-
10.1186/1471-2164-12-394, 3199782, 21813020
-
Cameron SL, Yoshizawa K, Mizukoshi A, Whiting MF, Johnson KP. Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera). BMC Genomics 2011, 12:394. 10.1186/1471-2164-12-394, 3199782, 21813020.
-
(2011)
BMC Genomics
, vol.12
, pp. 394
-
-
Cameron, S.L.1
Yoshizawa, K.2
Mizukoshi, A.3
Whiting, M.F.4
Johnson, K.P.5
-
6
-
-
35248882882
-
Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved among close nematode relatives
-
10.1007/s00239-007-9007-y, 17674076
-
Gibson T, Blok VC, Dowton M. Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved among close nematode relatives. J Mol Evol 2007, 65:308-315. 10.1007/s00239-007-9007-y, 17674076.
-
(2007)
J Mol Evol
, vol.65
, pp. 308-315
-
-
Gibson, T.1
Blok, V.C.2
Dowton, M.3
-
7
-
-
66049102115
-
The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus
-
10.1101/gr.083188.108, 2675979, 19336451
-
Shao R, Kirkness EF, Barker SC. The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus. Genome Res 2009, 19:904-912. 10.1101/gr.083188.108, 2675979, 19336451.
-
(2009)
Genome Res
, vol.19
, pp. 904-912
-
-
Shao, R.1
Kirkness, E.F.2
Barker, S.C.3
-
8
-
-
44649188614
-
Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis
-
10.1093/molbev/msn058, 18326862
-
Suga K, Welch DBM, Tanaka Y, Sakakura Y, Hagiwarak A. Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis. Mol Biol Evol 2008, 25:1129-1137. 10.1093/molbev/msn058, 18326862.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1129-1137
-
-
Suga, K.1
Welch, D.B.M.2
Tanaka, Y.3
Sakakura, Y.4
Hagiwarak, A.5
-
9
-
-
0033605214
-
Mitochondrial genes are found on minicircle DNA molecules in the mesozoan animal Dicyema
-
10.1006/jmbi.1998.2523, 10024439
-
Watanabe KI, Bessho Y, Kawasaki M, Hori H. Mitochondrial genes are found on minicircle DNA molecules in the mesozoan animal Dicyema. J Mol Biol 1999, 286:645-650. 10.1006/jmbi.1998.2523, 10024439.
-
(1999)
J Mol Biol
, vol.286
, pp. 645-650
-
-
Watanabe, K.I.1
Bessho, Y.2
Kawasaki, M.3
Hori, H.4
-
10
-
-
84859143923
-
The multipartite mitochondrial genome of liposcelis bostrychophila: insights into the evolution of mitochondrial genomes in bilateral animals
-
10.1371/journal.pone.0033973, 3316519, 22479490
-
Wei D-D, Shao R, Yuan M-L, Dou W, Barker SC, Wang J-J. The multipartite mitochondrial genome of liposcelis bostrychophila: insights into the evolution of mitochondrial genomes in bilateral animals. PLoS One 2012, 7:e33973. 10.1371/journal.pone.0033973, 3316519, 22479490.
-
(2012)
PLoS One
, vol.7
-
-
Wei, D.-D.1
Shao, R.2
Yuan, M.-L.3
Dou, W.4
Barker, S.C.5
Wang, J.-J.6
-
11
-
-
52549130466
-
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
-
10.1038/hdy.2008.62, 18612321
-
Gissi C, Iannelli F, Pesole G. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 2008, 101:301-320. 10.1038/hdy.2008.62, 18612321.
-
(2008)
Heredity
, vol.101
, pp. 301-320
-
-
Gissi, C.1
Iannelli, F.2
Pesole, G.3
-
12
-
-
41849149995
-
Evolution of gastropod mitochondrial genome arrangements
-
10.1186/1471-2148-8-61, 2291457, 18302768
-
Grande C, Templado J, Zardoya R. Evolution of gastropod mitochondrial genome arrangements. BMC Evol Biol 2008, 8:61. 10.1186/1471-2148-8-61, 2291457, 18302768.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 61
-
-
Grande, C.1
Templado, J.2
Zardoya, R.3
-
13
-
-
33747350705
-
Lophotrochozoan mitochondrial genomes
-
10.1093/icb/icj056, 21672765
-
Vallès Y, Boore JL. Lophotrochozoan mitochondrial genomes. Integr Comp Biol 2006, 46:544-557. 10.1093/icb/icj056, 21672765.
-
(2006)
Integr Comp Biol
, vol.46
, pp. 544-557
-
-
Vallès, Y.1
Boore, J.L.2
-
14
-
-
28244495220
-
Complete mitochondrial DNA sequence of the eastern oyster crassostrea virginica
-
10.1007/s10126-005-0004-0, 16132463
-
Milbury CA, Gaffney PM. Complete mitochondrial DNA sequence of the eastern oyster crassostrea virginica. Mar Biotechnol 2005, 7:697-712. 10.1007/s10126-005-0004-0, 16132463.
-
(2005)
Mar Biotechnol
, vol.7
, pp. 697-712
-
-
Milbury, C.A.1
Gaffney, P.M.2
-
15
-
-
77954662929
-
Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs
-
10.1186/1471-2164-11-440, 3091637, 20642828
-
Rawlings TA, MacInnis MJ, Bieler R, Boore JL, Collins TM. Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs. BMC Genomics 2010, 11:440. 10.1186/1471-2164-11-440, 3091637, 20642828.
-
(2010)
BMC Genomics
, vol.11
, pp. 440
-
-
Rawlings, T.A.1
MacInnis, M.J.2
Bieler, R.3
Boore, J.L.4
Collins, T.M.5
-
16
-
-
34547870541
-
The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?
-
10.1016/j.tig.2007.05.011, 17681397
-
Breton S, Doucet-Beaupré H, Stewart DT, Hoeh WR, Blier PU. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?. Trends Genet 2007, 23:465-474. 10.1016/j.tig.2007.05.011, 17681397.
-
(2007)
Trends Genet
, vol.23
, pp. 465-474
-
-
Breton, S.1
Doucet-Beaupré, H.2
Stewart, D.T.3
Hoeh, W.R.4
Blier, P.U.5
-
17
-
-
59949100674
-
Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution
-
Passamonti M, Ghiselli F. Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution. DNA Cell Biol 2009, 28:1-10.
-
(2009)
DNA Cell Biol
, vol.28
, pp. 1-10
-
-
Passamonti, M.1
Ghiselli, F.2
-
18
-
-
80052593773
-
Mitochondrial genomes and doubly uniparental inheritance: new insights from musculista senhousia sex-linked mitochondrial DNAs (bivalvia mytilidae)
-
10.1186/1471-2164-12-442, 3176263, 21896183
-
Passamonti M, Ricci A, Milani L, Ghiselli F. Mitochondrial genomes and doubly uniparental inheritance: new insights from musculista senhousia sex-linked mitochondrial DNAs (bivalvia mytilidae). BMC Genomics 2011, 12:442. 10.1186/1471-2164-12-442, 3176263, 21896183.
-
(2011)
BMC Genomics
, vol.12
, pp. 442
-
-
Passamonti, M.1
Ricci, A.2
Milani, L.3
Ghiselli, F.4
-
19
-
-
0027982521
-
An unusual type of mitochondrial-DNA inheritance in the blue mussel Mytilus
-
10.1073/pnas.91.16.7463, 44421, 8052604
-
Zouros E. An unusual type of mitochondrial-DNA inheritance in the blue mussel Mytilus. Proc Natl Acad Sci USA 1994, 91:7463-7467. 10.1073/pnas.91.16.7463, 44421, 8052604.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 7463-7467
-
-
Zouros, E.1
-
20
-
-
0028781641
-
Mitochondrial-DNA inheritance - Reply
-
10.1038/368818a0, 8159241
-
Zouros E. Mitochondrial-DNA inheritance - Reply. Nature 1994, 368:818. 10.1038/368818a0, 8159241.
-
(1994)
Nature
, vol.368
, pp. 818
-
-
Zouros, E.1
-
21
-
-
33644761929
-
Comparative analysis of gender associated complete mitochondrial genomes in marine mussels (Mytilus spp.)
-
1456209, 16322521
-
Breton S, Burger G, Stewart DT, Blier PU. Comparative analysis of gender associated complete mitochondrial genomes in marine mussels (Mytilus spp.). Genetics 2006, 172:1107-1119. 1456209, 16322521.
-
(2006)
Genetics
, vol.172
, pp. 1107-1119
-
-
Breton, S.1
Burger, G.2
Stewart, D.T.3
Blier, P.U.4
-
22
-
-
71549154068
-
Comparative mitochondrial genomics of freshwater mussels (bivalvia: unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication
-
10.1534/genetics.109.110700, 2787441, 19822725
-
Breton S, Doucet-Beaupré H, Stewart DT, Piontkivska H, Karmakar M, Bogan AE, Blier PU, Hoeh WR. Comparative mitochondrial genomics of freshwater mussels (bivalvia: unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication. Genetics 2009, 183:1575-1589. 10.1534/genetics.109.110700, 2787441, 19822725.
-
(2009)
Genetics
, vol.183
, pp. 1575-1589
-
-
Breton, S.1
Doucet-Beaupré, H.2
Stewart, D.T.3
Piontkivska, H.4
Karmakar, M.5
Bogan, A.E.6
Blier, P.U.7
Hoeh, W.R.8
-
23
-
-
0031769998
-
Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
-
10.1016/S0959-437X(98)80035-X, 9914213
-
Boore JL, Brown WM. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr Opin Genet Dev 1998, 8:668-674. 10.1016/S0959-437X(98)80035-X, 9914213.
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 668-674
-
-
Boore, J.L.1
Brown, W.M.2
-
24
-
-
1942485834
-
The complete sequence and gene organization of the mitochondrial genome of the gadilid scaphopod Siphonondentalium labatum (Mollusca)
-
10.1016/j.ympev.2003.08.007, 15062797
-
Dreyer H, Steiner G. The complete sequence and gene organization of the mitochondrial genome of the gadilid scaphopod Siphonondentalium labatum (Mollusca). Mol Phylogenet Evol 2004, 31:605-617. 10.1016/j.ympev.2003.08.007, 15062797.
-
(2004)
Mol Phylogenet Evol
, vol.31
, pp. 605-617
-
-
Dreyer, H.1
Steiner, G.2
-
25
-
-
0033793019
-
Rare genomic changes as a tool for phylogenetics
-
Rokas A, Holland PWH. Rare genomic changes as a tool for phylogenetics. TREE 2000, 15:454-459.
-
(2000)
TREE
, vol.15
, pp. 454-459
-
-
Rokas, A.1
Holland, P.W.H.2
-
26
-
-
0033595767
-
Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes
-
Stechmann A, Schlegel M. Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes. Proc R Soc Lond B 1999, 266:2043-2052.
-
(1999)
Proc R Soc Lond B
, vol.266
, pp. 2043-2052
-
-
Stechmann, A.1
Schlegel, M.2
-
27
-
-
65549164448
-
Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa
-
10.1186/1471-2164-10-167, 2678162, 19379522
-
Jang KH, Hwang UW. Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa. BMC Genomics 2009, 10:167. 10.1186/1471-2164-10-167, 2678162, 19379522.
-
(2009)
BMC Genomics
, vol.10
, pp. 167
-
-
Jang, K.H.1
Hwang, U.W.2
-
28
-
-
33748969002
-
The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes
-
10.1007/s00239-005-0246-5, 16838214
-
Xu W, Jameson D, Tang B, Higgs PG. The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes. J Mol Evol 2006, 63:375-392. 10.1007/s00239-005-0246-5, 16838214.
-
(2006)
J Mol Evol
, vol.63
, pp. 375-392
-
-
Xu, W.1
Jameson, D.2
Tang, B.3
Higgs, P.G.4
-
29
-
-
80053132393
-
Phylogenomics reveals deep molluscan relationships
-
10.1038/nature10382, 21892190
-
Kocot KM, Cannon JT, Todt C, Citarella MR, Kohn AB, Meyer A, Santos SR, Schander C, Moroz LL, Lieb B, Halanych KM. Phylogenomics reveals deep molluscan relationships. Nature 2011, 477:452-456. 10.1038/nature10382, 21892190.
-
(2011)
Nature
, vol.477
, pp. 452-456
-
-
Kocot, K.M.1
Cannon, J.T.2
Todt, C.3
Citarella, M.R.4
Kohn, A.B.5
Meyer, A.6
Santos, S.R.7
Schander, C.8
Moroz, L.L.9
Lieb, B.10
Halanych, K.M.11
-
30
-
-
83555166100
-
Resolving the evolutionary relationships of molluscs with phylogenomic tools
-
10.1038/nature10526, 22031330
-
Smith SA, Wilson NG, Goetz FE, Feehery C, Andrade SCS, Rouse GW, Giribet G, Dunn CW. Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 2011, 480:364-367. 10.1038/nature10526, 22031330.
-
(2011)
Nature
, vol.480
, pp. 364-367
-
-
Smith, S.A.1
Wilson, N.G.2
Goetz, F.E.3
Feehery, C.4
Andrade, S.C.S.5
Rouse, G.W.6
Giribet, G.7
Dunn, C.W.8
-
31
-
-
70649089305
-
Assessing the molluscan hypothesis Serialia (Monoplacophora + Polyplacophora) using novel molecular data
-
10.1016/j.ympev.2009.07.028, 19647088
-
Wilson NG, Rouse GW, Giribet G. Assessing the molluscan hypothesis Serialia (Monoplacophora + Polyplacophora) using novel molecular data. Mol Phylogenet Evol 2010, 54:187-193. 10.1016/j.ympev.2009.07.028, 19647088.
-
(2010)
Mol Phylogenet Evol
, vol.54
, pp. 187-193
-
-
Wilson, N.G.1
Rouse, G.W.2
Giribet, G.3
-
32
-
-
0027981455
-
Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata
-
1206160, 7828825
-
Boore JL, Brown WM. Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata. Genetics 1994, 138:423-443. 1206160, 7828825.
-
(1994)
Genetics
, vol.138
, pp. 423-443
-
-
Boore, J.L.1
Brown, W.M.2
-
33
-
-
28244459701
-
Mitochondrial DNA sequence and gene organization in the Australian blacklip abalone Haliotis rubra (Leach)
-
10.1007/s10126-005-0013-z, 16206015
-
Maynard BT, Kerr LJ, McKiernan JM, Jansen ES, Hanna PJ. Mitochondrial DNA sequence and gene organization in the Australian blacklip abalone Haliotis rubra (Leach). Mar Biotechnol 2005, 7:645-658. 10.1007/s10126-005-0013-z, 16206015.
-
(2005)
Mar Biotechnol
, vol.7
, pp. 645-658
-
-
Maynard, B.T.1
Kerr, L.J.2
McKiernan, J.M.3
Jansen, E.S.4
Hanna, P.J.5
-
34
-
-
70349120372
-
Neogastropod phylogenetic relationships based on entire mitochondrial genomes
-
10.1186/1471-2148-9-210, 2741453, 19698157
-
Cunha RL, Grande C, Zardoya R. Neogastropod phylogenetic relationships based on entire mitochondrial genomes. BMC Evol Biol 2009, 9:210. 10.1186/1471-2148-9-210, 2741453, 19698157.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 210
-
-
Cunha, R.L.1
Grande, C.2
Zardoya, R.3
-
35
-
-
33747376866
-
The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda)
-
10.1186/1471-2164-7-182, 1544340, 16854241
-
Boore JL. The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda). BMC Genomics 2006, 7:182. 10.1186/1471-2164-7-182, 1544340, 16854241.
-
(2006)
BMC Genomics
, vol.7
, pp. 182
-
-
Boore, J.L.1
-
36
-
-
1242352073
-
The mitochondrial genome of phoronis architecta-comparisons demonstrate that phoronids Are lophotrochozoan protostomes
-
Helfenbein KG, Boore JL. The mitochondrial genome of phoronis architecta-comparisons demonstrate that phoronids Are lophotrochozoan protostomes. Mol Biol Evol 2004, 21:153-157.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 153-157
-
-
Helfenbein, K.G.1
Boore, J.L.2
-
37
-
-
77953286665
-
Characterization of a mitochondrial ORF from the gender-associated mtDNAs of mytilus spp. (Bivalvia: mytilidae): identification of the " missing" ATPase 8 gene
-
Breton S, Stewart DT, Hoeh WR. Characterization of a mitochondrial ORF from the gender-associated mtDNAs of mytilus spp. (Bivalvia: mytilidae): identification of the " missing" ATPase 8 gene. Mar Genom 2010, 3:11-18.
-
(2010)
Mar Genom
, vol.3
, pp. 11-18
-
-
Breton, S.1
Stewart, D.T.2
Hoeh, W.R.3
-
38
-
-
77949285980
-
Mitochondrial phylogenomics of the bivalvia (mollusca): searching for the origin and mitogenomics correlates of doubly uniparental inheritance of mtDNA
-
10.1186/1471-2148-10-50, 2834691, 20167078
-
Doucet-Beaupré H, Breton S, Chapman EG, Blier PU, Bogan AE, Stewart DT, Hoeh WR. Mitochondrial phylogenomics of the bivalvia (mollusca): searching for the origin and mitogenomics correlates of doubly uniparental inheritance of mtDNA. BMC Evol Biol 2010, 10:50. 10.1186/1471-2148-10-50, 2834691, 20167078.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 50
-
-
Doucet-Beaupré, H.1
Breton, S.2
Chapman, E.G.3
Blier, P.U.4
Bogan, A.E.5
Stewart, D.T.6
Hoeh, W.R.7
-
39
-
-
84855976494
-
Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome
-
10.1016/j.margen.2011.06.006, 22118638
-
Wang H, Zhang S, Xiao G, Liu B. Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome. Marine Genomics 2011, 4:263-271. 10.1016/j.margen.2011.06.006, 22118638.
-
(2011)
Marine Genomics
, vol.4
, pp. 263-271
-
-
Wang, H.1
Zhang, S.2
Xiao, G.3
Liu, B.4
-
40
-
-
78649905901
-
Complete mtDNA of Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region
-
10.1016/j.cbd.2010.07.003, 20797924
-
Wang H, Zhang S, Li Y, Liu B. Complete mtDNA of Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region. Comp Biochem Physiol Part D Genomics Proteomics 2010, 5:256-264. 10.1016/j.cbd.2010.07.003, 20797924.
-
(2010)
Comp Biochem Physiol Part D Genomics Proteomics
, vol.5
, pp. 256-264
-
-
Wang, H.1
Zhang, S.2
Li, Y.3
Liu, B.4
-
41
-
-
84862827665
-
Complete mitochondrial genome of coelomactra antiquata (mollusca: bivalvia): the first representative from the family mactridae with novel gene order and unusual tandem repeats
-
Meng X, Zhao N, Shen X, Hao J, Liang M, Zhu X, Cheng H, Yan B, Liu Z. Complete mitochondrial genome of coelomactra antiquata (mollusca: bivalvia): the first representative from the family mactridae with novel gene order and unusual tandem repeats. Comp Biochem Phys D 2012, 7:175-179.
-
(2012)
Comp Biochem Phys D
, vol.7
, pp. 175-179
-
-
Meng, X.1
Zhao, N.2
Shen, X.3
Hao, J.4
Liang, M.5
Zhu, X.6
Cheng, H.7
Yan, B.8
Liu, Z.9
-
42
-
-
80053899293
-
Complete mitochondrial DNA sequence of the European flat oyster Ostrea edulis confirms Ostreidae classification
-
10.1186/1756-0500-4-400, 3214155, 21989403
-
Danic-Tchaleu G, Heurtebise S, Morga B, Lapegue S. Complete mitochondrial DNA sequence of the European flat oyster Ostrea edulis confirms Ostreidae classification. BMC Res Notes 2011, 4:400. 10.1186/1756-0500-4-400, 3214155, 21989403.
-
(2011)
BMC Res Notes
, vol.4
, pp. 400
-
-
Danic-Tchaleu, G.1
Heurtebise, S.2
Morga, B.3
Lapegue, S.4
-
43
-
-
77956231683
-
Comparison of seven Crassostrea mitogenomes and phylogenetic analyses
-
10.1016/j.ympev.2010.05.029, 20566320
-
Wu X, Xu X, Yu Z, Wei Z, Xia J. Comparison of seven Crassostrea mitogenomes and phylogenetic analyses. Mol Phylogenet Evol 2010, 57:448-454. 10.1016/j.ympev.2010.05.029, 20566320.
-
(2010)
Mol Phylogenet Evol
, vol.57
, pp. 448-454
-
-
Wu, X.1
Xu, X.2
Yu, Z.3
Wei, Z.4
Xia, J.5
-
44
-
-
79251562572
-
Mutation and selection on the wobble nucleotide in tRNA anticodons in marine bivalve mitochondrial genomes
-
10.1371/journal.pone.0016147, 3022732, 21267462
-
Yu H, Li Q. Mutation and selection on the wobble nucleotide in tRNA anticodons in marine bivalve mitochondrial genomes. PLoS One 2011, 6:e16147. 10.1371/journal.pone.0016147, 3022732, 21267462.
-
(2011)
PLoS One
, vol.6
-
-
Yu, H.1
Li, Q.2
-
45
-
-
0002548884
-
Classification of the Bivalvia
-
Newell ND. Classification of the Bivalvia. Am Mus Novit 1965, 2206:1-25.
-
(1965)
Am Mus Novit
, vol.2206
, pp. 1-25
-
-
Newell, N.D.1
-
46
-
-
65349148953
-
Ancient chemosynthetic bivalves: systematics of Solemyidae from eastern and southern Australia (Mollusca: Bivalvia)
-
Taylor JD, Glover EA, Williams ST. Ancient chemosynthetic bivalves: systematics of Solemyidae from eastern and southern Australia (Mollusca: Bivalvia). Memoirs Queensland Museum - Nature 2008, 54:75-104.
-
(2008)
Memoirs Queensland Museum - Nature
, vol.54
, pp. 75-104
-
-
Taylor, J.D.1
Glover, E.A.2
Williams, S.T.3
-
47
-
-
80455174563
-
Chemosynthetic Bivalves of the Family Solemyidae (Bivalvia, Protobranchia) in the Neogene of the Mediterranean Basin
-
Taviani M, Angeletti L, Ceregato A. Chemosynthetic Bivalves of the Family Solemyidae (Bivalvia, Protobranchia) in the Neogene of the Mediterranean Basin. J Paleontol 2011, 85:1067-1076.
-
(2011)
J Paleontol
, vol.85
, pp. 1067-1076
-
-
Taviani, M.1
Angeletti, L.2
Ceregato, A.3
-
48
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky HJ. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000, 132:365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.J.2
-
49
-
-
80055110730
-
A molecular phylogeny of bivalve mollusks: ancient radiations and divergences as revealed by mitochondrial genes
-
10.1371/journal.pone.0027147, 3206082, 22069499
-
Plazzi F, Ceregato A, Taviani M, Passamonti M. A molecular phylogeny of bivalve mollusks: ancient radiations and divergences as revealed by mitochondrial genes. PLoS One 2011, 6:e27147. 10.1371/journal.pone.0027147, 3206082, 22069499.
-
(2011)
PLoS One
, vol.6
-
-
Plazzi, F.1
Ceregato, A.2
Taviani, M.3
Passamonti, M.4
-
50
-
-
0016591521
-
Size fractionation of double-stranded DNA by precipitation with polyethylene glycol
-
10.1093/nar/2.3.383, 342844, 236548
-
Lis JT, Schleif R. Size fractionation of double-stranded DNA by precipitation with polyethylene glycol. Nucleic Acid Res 1975, 2:383-389. 10.1093/nar/2.3.383, 342844, 236548.
-
(1975)
Nucleic Acid Res
, vol.2
, pp. 383-389
-
-
Lis, J.T.1
Schleif, R.2
-
51
-
-
78049355057
-
Towards a molecular phylogeny of Mollusks: Bivalves' early evolution as revealed by mitochondrial genes
-
10.1016/j.ympev.2010.08.032, 20817110
-
Plazzi F, Passamonti M. Towards a molecular phylogeny of Mollusks: Bivalves' early evolution as revealed by mitochondrial genes. Mol Phylogenet Evol 2010, 57:641-657. 10.1016/j.ympev.2010.08.032, 20817110.
-
(2010)
Mol Phylogenet Evol
, vol.57
, pp. 641-657
-
-
Plazzi, F.1
Passamonti, M.2
-
53
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
10.1093/bioinformatics/btm009, 2387122, 17237039
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 2007, 23:673-679. 10.1093/bioinformatics/btm009, 2387122, 17237039.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
54
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
55
-
-
33747844624
-
BLAST: improvements for better sequence analysis
-
10.1093/nar/gkl164, 1538791, 16845079
-
Ye J, McGinnis S, Madden TL. BLAST: improvements for better sequence analysis. Nucleic Acids Res 2006, 34:W6-W9. 10.1093/nar/gkl164, 1538791, 16845079.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Ye, J.1
McGinnis, S.2
Madden, T.L.3
-
56
-
-
67849103756
-
@TOME-2: a new pipeline for comparative modeling of protein-ligand complexes
-
10.1093/nar/gkp368, 2703933, 19443448
-
Pons J-L, Labesse G. @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes. Nucleic Acids Res 2009, 37:W485-W491. 10.1093/nar/gkp368, 2703933, 19443448.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Pons, J.-L.1
Labesse, G.2
-
57
-
-
0034800374
-
InterProScan - an integration platform for the signature-recognition methods in InterPro
-
10.1093/bioinformatics/17.9.847, 11590104
-
Zdobnov EM, Apweiler R. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848. 10.1093/bioinformatics/17.9.847, 11590104.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
58
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
10.1038/nmeth.1701, 21959131
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 2011, 8:785-786. 10.1038/nmeth.1701, 21959131.
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
59
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
10.1093/bioinformatics/bti125, 15531603
-
Söding J. Protein homology detection by HMM-HMM comparison. Bioinformatics 2005, 21:951-960. 10.1093/bioinformatics/bti125, 15531603.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Söding, J.1
-
60
-
-
11344292852
-
SPARKS 2 and SP3 servers in CASP6
-
1408319, 15523666
-
Zhou H, Zhou Y. SPARKS 2 and SP3 servers in CASP6. Proteins 2005, 58:321-328. 1408319, 15523666.
-
(2005)
Proteins
, vol.58
, pp. 321-328
-
-
Zhou, H.1
Zhou, Y.2
-
61
-
-
0035967880
-
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent Gap penalties
-
10.1006/jmbi.2001.4762, 11419950
-
Shi J, Blundell TL, Mizuguchi K. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent Gap penalties. J Mol Biol 2001, 310:243-257. 10.1006/jmbi.2001.4762, 11419950.
-
(2001)
J Mol Biol
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
62
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
10.1093/nar/gkg595, 169194, 12824337
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
63
-
-
0030854739
-
TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
146525, 9023104
-
Lowe TM, Eddy SR. TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
64
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
1160127, 15980563
-
Schattner P, Brooks A, Lowe TM. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 2005, 33(suppl 2):W686-W689. 1160127, 15980563.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.SUPPL. 2
-
-
Schattner, P.1
Brooks, A.2
Lowe, T.M.3
-
65
-
-
38349180130
-
ARWEN, a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
-
10.1093/bioinformatics/btm573, 18033792
-
Laslett D, Canbäck B. ARWEN, a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics 2008, 24:172-175. 10.1093/bioinformatics/btm573, 18033792.
-
(2008)
Bioinformatics
, vol.24
, pp. 172-175
-
-
Laslett, D.1
Canbäck, B.2
-
66
-
-
67650727366
-
VARNA: interactive drawing and editing of the RNA secondary structure
-
10.1093/bioinformatics/btp250, 2712331, 19398448
-
Darty K, Denise A, Ponty J. VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 2009, 25:1974-1975. 10.1093/bioinformatics/btp250, 2712331, 19398448.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, J.3
-
67
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
10.1093/molbev/msr121, 3203626, 21546353
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
68
-
-
3142727129
-
Spectral repeat finder (SRF): identification of repetitive sequences using Fourier transformation
-
10.1093/bioinformatics/bth103, 14976032
-
Sharma D, Issac B, Raghava GP, Ramaswamy R. Spectral repeat finder (SRF): identification of repetitive sequences using Fourier transformation. Bioinformatics 2004, 20:1405-1412. 10.1093/bioinformatics/bth103, 14976032.
-
(2004)
Bioinformatics
, vol.20
, pp. 1405-1412
-
-
Sharma, D.1
Issac, B.2
Raghava, G.P.3
Ramaswamy, R.4
-
69
-
-
40749117710
-
GenomeVx: simple web-based creation of editable circular chromosome maps
-
10.1093/bioinformatics/btm598, 18227121
-
Conant GC, Wolfe KH. GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 2008, 24:861-862. 10.1093/bioinformatics/btm598, 18227121.
-
(2008)
Bioinformatics
, vol.24
, pp. 861-862
-
-
Conant, G.C.1
Wolfe, K.H.2
-
70
-
-
0033977831
-
Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa
-
10.1093/oxfordjournals.molbev.a026241, 10666709
-
Boore JL, Brown WM. Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Mol Biol Evol 2000, 17:87-106. 10.1093/oxfordjournals.molbev.a026241, 10666709.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 87-106
-
-
Boore, J.L.1
Brown, W.M.2
-
71
-
-
77951246298
-
Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies
-
10.1186/1471-2105-11-209, 2871275, 20423512
-
Plazzi F, Ferrucci RR, Passamonti M. Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies. BMC Bioinformatics 2010, 11:209. 10.1186/1471-2105-11-209, 2871275, 20423512.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 209
-
-
Plazzi, F.1
Ferrucci, R.R.2
Passamonti, M.3
-
72
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
10.1093/nar/gkf436, 135756, 12136088
-
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002, 30:3059-3066. 10.1093/nar/gkf436, 135756, 12136088.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
73
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
74
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
10.1186/1471-2105-5-113, 517706, 15318951
-
Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113. 10.1186/1471-2105-5-113, 517706, 15318951.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
75
-
-
34547571027
-
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
-
10.1093/nar/gkm333, 1933118, 17526519
-
Moretti S, Armougom F, Wallace IM, Higgins DG, Jongeneel CV, Notredame C. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res 2007, 35:W645-W648. 10.1093/nar/gkm333, 1933118, 17526519.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Moretti, S.1
Armougom, F.2
Wallace, I.M.3
Higgins, D.G.4
Jongeneel, C.V.5
Notredame, C.6
-
76
-
-
33645507429
-
M-Coffee: combining multiple sequence alignment methods with T-Coffee
-
10.1093/nar/gkl091, 1410914, 16556910
-
Wallace IM, O'Sullivan O, Higgins DG, Notredame C. M-Coffee: combining multiple sequence alignment methods with T-Coffee. Nucleic Acids Res 2006, 34:1692-1699. 10.1093/nar/gkl091, 1410914, 16556910.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1692-1699
-
-
Wallace, I.M.1
O'Sullivan, O.2
Higgins, D.G.3
Notredame, C.4
-
77
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
10.1093/oxfordjournals.molbev.a026334, 10742046
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17:540-552. 10.1093/oxfordjournals.molbev.a026334, 10742046.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
78
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
10.1080/10635150701472164, 17654362
-
Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56:564-577. 10.1080/10635150701472164, 17654362.
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
79
-
-
84861380450
-
PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses
-
10.1093/molbev/mss020, 22319168
-
Lanfear R, Calcott B, Ho SYW, Guindon S. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol 2012, 29:1695-1701. 10.1093/molbev/mss020, 22319168.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1695-1701
-
-
Lanfear, R.1
Calcott, B.2
Ho, S.Y.W.3
Guindon, S.4
-
80
-
-
79954529507
-
ProtTest 3: fast selection of best-fit models of protein evolution
-
10.1093/bioinformatics/btr088, 21335321
-
Darriba D, Taboada GL, Doallo R, Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 2011, 27:1164-1165. 10.1093/bioinformatics/btr088, 21335321.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
81
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520, 14530136
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704. 10.1080/10635150390235520, 14530136.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
82
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
10.1093/bioinformatics/btl446, 16928733
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690. 10.1093/bioinformatics/btl446, 16928733.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
83
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
10.1080/10635150802429642, 18853362
-
Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 2008, 57:758-771. 10.1080/10635150802429642, 18853362.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
85
-
-
47049086792
-
PhyloWidget: Web-based visualizations for the tree of life
-
Jordan GE, Piel WH. PhyloWidget: Web-based visualizations for the tree of life. Bioinformatics 2008, 15:1641-1642.
-
(2008)
Bioinformatics
, vol.15
, pp. 1641-1642
-
-
Jordan, G.E.1
Piel, W.H.2
-
86
-
-
38649092410
-
Dendroscope - An interactive viewer for large phylogenetic trees
-
10.1186/1471-2105-8-460, 2216043, 18034891
-
Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R. Dendroscope - An interactive viewer for large phylogenetic trees. BMC Bioinformatics 2007, 8:460. 10.1186/1471-2105-8-460, 2216043, 18034891.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 460
-
-
Huson, D.H.1
Richter, D.C.2
Rausch, C.3
Dezulian, T.4
Franz, M.5
Rupp, R.6
-
87
-
-
78149467933
-
The mitochondrial genome of the butterfly Papilio xuthus (Lepidoptera: Papilionidae) and related phylogenetic analyses
-
10.1007/s11033-010-0044-z, 20213506
-
Feng X, Liu D-F, Wang N-X, Zhu C-D, Jiang G-F. The mitochondrial genome of the butterfly Papilio xuthus (Lepidoptera: Papilionidae) and related phylogenetic analyses. Mol Biol Rep 2010, 37:3877-3888. 10.1007/s11033-010-0044-z, 20213506.
-
(2010)
Mol Biol Rep
, vol.37
, pp. 3877-3888
-
-
Feng, X.1
Liu, D.-F.2
Wang, N.-X.3
Zhu, C.-D.4
Jiang, G.-F.5
-
88
-
-
0024563542
-
Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA that contains a dihydrouridine-arm replacement loop, and of serine-specifying AGA and AGG codons
-
10.1007/BF02603072, 2545889
-
Garey GR, Wolstenholme DR. Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA that contains a dihydrouridine-arm replacement loop, and of serine-specifying AGA and AGG codons. J Mol Evol 1989, 28:374-387. 10.1007/BF02603072, 2545889.
-
(1989)
J Mol Evol
, vol.28
, pp. 374-387
-
-
Garey, G.R.1
Wolstenholme, D.R.2
-
89
-
-
21744458548
-
The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae)
-
10.1016/j.gene.2005.04.019, 15950403
-
Kim I, Cha SY, Yoon MH, Hwang JS, Lee SM, Sohn HD, Jin BR. The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae). Gene 2005, 353:155-168. 10.1016/j.gene.2005.04.019, 15950403.
-
(2005)
Gene
, vol.353
, pp. 155-168
-
-
Kim, I.1
Cha, S.Y.2
Yoon, M.H.3
Hwang, J.S.4
Lee, S.M.5
Sohn, H.D.6
Jin, B.R.7
-
90
-
-
54149095095
-
A comparative analysis of mitochondrial genomes in coleoptera (arthropoda: insecta) and genome descriptions of Six New beetles
-
10.1093/molbev/msn198, 2568038, 18779259
-
Sheffield NC, Song H, Cameron SL, Whiting MF. A comparative analysis of mitochondrial genomes in coleoptera (arthropoda: insecta) and genome descriptions of Six New beetles. Mol Biol Evol 2008, 25:2499-2509. 10.1093/molbev/msn198, 2568038, 18779259.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2499-2509
-
-
Sheffield, N.C.1
Song, H.2
Cameron, S.L.3
Whiting, M.F.4
-
91
-
-
0242666315
-
Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca)
-
10.1093/molbev/msg218, 12949150
-
Serb JM, Lydeard C. Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca). Mol Biol Evol 2003, 20:1854-1886. 10.1093/molbev/msg218, 12949150.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1854-1886
-
-
Serb, J.M.1
Lydeard, C.2
-
92
-
-
0037252462
-
Replication and transcription of mammalian mitochondrial DNA
-
Fernandez-Silva P, Enriquez JA, Montoya J. Replication and transcription of mammalian mitochondrial DNA. Exp Physiol 2003, 88:4156.
-
(2003)
Exp Physiol
, vol.88
, pp. 4156
-
-
Fernandez-Silva, P.1
Enriquez, J.A.2
Montoya, J.3
-
94
-
-
84887404440
-
The mitochondrial genome of the sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca
-
Boore JL, Staton JL. The mitochondrial genome of the sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca. Mol Biol Evol 2002, 17:540-552.
-
(2002)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Boore, J.L.1
Staton, J.L.2
-
95
-
-
0032921847
-
Partial sequence of a sponge mitochondrial genome reveals sequence similarity to cnidaria in cytochrome oxidase subunit II and the large ribosomal RNA subunit
-
10.1007/PL00006497, 10198120
-
Watkins RF, Beckenbach AT. Partial sequence of a sponge mitochondrial genome reveals sequence similarity to cnidaria in cytochrome oxidase subunit II and the large ribosomal RNA subunit. J Mol Evol 1999, 48:542-554. 10.1007/PL00006497, 10198120.
-
(1999)
J Mol Evol
, vol.48
, pp. 542-554
-
-
Watkins, R.F.1
Beckenbach, A.T.2
-
96
-
-
77049122004
-
Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets
-
10.1186/1756-0500-2-69, 2683862, 19416513
-
Wu X, Xu X, Yu Z, Kong X. Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets. BMC Research Notes 2009, 2:69. 10.1186/1756-0500-2-69, 2683862, 19416513.
-
(2009)
BMC Research Notes
, vol.2
, pp. 69
-
-
Wu, X.1
Xu, X.2
Yu, Z.3
Kong, X.4
-
97
-
-
0030462462
-
Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli
-
10.1073/pnas.93.24.13919, 19468, 8943036
-
Beletskii A, Bhagwat AS. Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli. Proc Natl Acad Sci USA 1996, 93:13919-13924. 10.1073/pnas.93.24.13919, 19468, 8943036.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 13919-13924
-
-
Beletskii, A.1
Bhagwat, A.S.2
-
98
-
-
0030976320
-
Strand asymmetries in DNA evolution
-
10.1016/S0168-9525(97)01118-9, 9196330
-
Francino MP, Ochman H. Strand asymmetries in DNA evolution. Trends Genet 1997, 13:240-245. 10.1016/S0168-9525(97)01118-9, 9196330.
-
(1997)
Trends Genet
, vol.13
, pp. 240-245
-
-
Francino, M.P.1
Ochman, H.2
-
99
-
-
0025344222
-
A sensitive genetic assay for the detection of cytosine deamination: Determination of rate constant and the activation energy
-
10.1021/bi00462a015, 2185829
-
Frederico LA, Kunkel TA, Shaw BA. A sensitive genetic assay for the detection of cytosine deamination: Determination of rate constant and the activation energy. Biochemistry 1990, 29:2532-2537. 10.1021/bi00462a015, 2185829.
-
(1990)
Biochemistry
, vol.29
, pp. 2532-2537
-
-
Frederico, L.A.1
Kunkel, T.A.2
Shaw, B.A.3
-
100
-
-
19044389661
-
Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences
-
10.1080/10635150590947843, 16021696
-
Hassanin A, Léger N, Deutsch J. Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences. Syst Biol 2005, 54:277-298. 10.1080/10635150590947843, 16021696.
-
(2005)
Syst Biol
, vol.54
, pp. 277-298
-
-
Hassanin, A.1
Léger, N.2
Deutsch, J.3
-
101
-
-
0029049426
-
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
-
10.1007/BF01215182, 7563121
-
Perna NT, Kocher TD. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J Mol Evol 1995, 41:353-358. 10.1007/BF01215182, 7563121.
-
(1995)
J Mol Evol
, vol.41
, pp. 353-358
-
-
Perna, N.T.1
Kocher, T.D.2
-
102
-
-
0031950474
-
Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
-
10.1093/oxfordjournals.molbev.a026011, 9718723
-
Reyes A, Gissi C, Pesole G, Saccone C. Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol Biol Evol 1998, 15:957-966. 10.1093/oxfordjournals.molbev.a026011, 9718723.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 957-966
-
-
Reyes, A.1
Gissi, C.2
Pesole, G.3
Saccone, C.4
-
104
-
-
0242318326
-
Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes
-
1462789, 14573484
-
Faith JJ, Pollock DD. Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. Genetics 2003, 165:735-745. 1462789, 14573484.
-
(2003)
Genetics
, vol.165
, pp. 735-745
-
-
Faith, J.J.1
Pollock, D.D.2
-
105
-
-
34548522039
-
Nucleotide content gradients in maternally and paternally inherited mitochondrial genomes of the mussel Mytilus
-
10.1007/s00239-005-0298-6, 17632681
-
Rodakis GC, Cao L, Mizi A, Kenchington EL, Zouros E. Nucleotide content gradients in maternally and paternally inherited mitochondrial genomes of the mussel Mytilus. J Mol Evol 2007, 65:124-136. 10.1007/s00239-005-0298-6, 17632681.
-
(2007)
J Mol Evol
, vol.65
, pp. 124-136
-
-
Rodakis, G.C.1
Cao, L.2
Mizi, A.3
Kenchington, E.L.4
Zouros, E.5
-
106
-
-
0037029128
-
Mitochondrial DNA in metazoa: degree of freedom in a frozen event
-
10.1016/S0378-1119(01)00807-1, 11943454
-
Saccone C, Gissi C, Reyes A, Larizza A, Sbisà E, Pesole G. Mitochondrial DNA in metazoa: degree of freedom in a frozen event. Gene 2002, 286:3-12. 10.1016/S0378-1119(01)00807-1, 11943454.
-
(2002)
Gene
, vol.286
, pp. 3-12
-
-
Saccone, C.1
Gissi, C.2
Reyes, A.3
Larizza, A.4
Sbisà, E.5
Pesole, G.6
-
107
-
-
50249152906
-
The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isidiidae): genome structure and putative origins of replication are not conserved among octocorals
-
10.1007/s00239-008-9116-2, 18506498
-
Brugler MR, France SC. The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isidiidae): genome structure and putative origins of replication are not conserved among octocorals. J Mol Evol 2008, 67:125-136. 10.1007/s00239-008-9116-2, 18506498.
-
(2008)
J Mol Evol
, vol.67
, pp. 125-136
-
-
Brugler, M.R.1
France, S.C.2
-
108
-
-
40649112682
-
Unusually long palindromes are abundant in mitochondrial control regions of insects and nematodes
-
10.1371/journal.pone.0000110, 1762429, 17205114
-
Arunkumar KP, Nagaraju J. Unusually long palindromes are abundant in mitochondrial control regions of insects and nematodes. PLoS One 2006, 1:e110. 10.1371/journal.pone.0000110, 1762429, 17205114.
-
(2006)
PLoS One
, vol.1
-
-
Arunkumar, K.P.1
Nagaraju, J.2
-
109
-
-
33745746528
-
Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences
-
10.1016/j.jtbi.2005.11.035, 16430924
-
Seligmann H, Krishnan NM, Rao BJ. Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences. J Theor Biol 2006, 241:321-332. 10.1016/j.jtbi.2005.11.035, 16430924.
-
(2006)
J Theor Biol
, vol.241
, pp. 321-332
-
-
Seligmann, H.1
Krishnan, N.M.2
Rao, B.J.3
-
110
-
-
80052448710
-
The complete mitochondrial genome of the hard clam Meretrix meretrix
-
10.1007/s11033-010-0449-8, 21086173
-
He C, Wang J, Gao X, Song W, Li H, Li Y, Liu W, Su H. The complete mitochondrial genome of the hard clam Meretrix meretrix. Mol Biol Rep 2011, 38:3401-3409. 10.1007/s11033-010-0449-8, 21086173.
-
(2011)
Mol Biol Rep
, vol.38
, pp. 3401-3409
-
-
He, C.1
Wang, J.2
Gao, X.3
Song, W.4
Li, H.5
Li, Y.6
Liu, W.7
Su, H.8
-
111
-
-
70349785729
-
The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae)
-
Ren J, Shen X, Sun M, Jiang F, Yu Y, Chi Z, Liu B. The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae). Mitochondr DNA 2009, 20:78-87.
-
(2009)
Mitochondr DNA
, vol.20
, pp. 78-87
-
-
Ren, J.1
Shen, X.2
Sun, M.3
Jiang, F.4
Yu, Y.5
Chi, Z.6
Liu, B.7
-
112
-
-
0031979635
-
Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion
-
10.1007/PL00006321, 9541536
-
Pont-Kingdon G, Okada NA, Macfarlane JL, Beagley CT, Watkins-Sims CD, Cavalier-Smith T, Clark-Walker GD, Wolstenholme DR. Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion. J Mol Evol 1998, 46:419-431. 10.1007/PL00006321, 9541536.
-
(1998)
J Mol Evol
, vol.46
, pp. 419-431
-
-
Pont-Kingdon, G.1
Okada, N.A.2
Macfarlane, J.L.3
Beagley, C.T.4
Watkins-Sims, C.D.5
Cavalier-Smith, T.6
Clark-Walker, G.D.7
Wolstenholme, D.R.8
-
113
-
-
33748919994
-
Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): a linear DNA molecule encoding a putative DNA-dependant DNA polymerase
-
Shao Z, Shannon G, Chaga OY, Lavrov DV. Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): a linear DNA molecule encoding a putative DNA-dependant DNA polymerase. Gene 2006, 381:92-101.
-
(2006)
Gene
, vol.381
, pp. 92-101
-
-
Shao, Z.1
Shannon, G.2
Chaga, O.Y.3
Lavrov, D.V.4
-
115
-
-
33646725128
-
Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons
-
10.1073/pnas.0602578103, 1472512, 16675549
-
Giribet G, Okusu A, Lindgren AR, Huff SW, Schrödl M, Nishiguchi MK. Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons. Proc Natl Acad Sci USA 2006, 103:7723-7728. 10.1073/pnas.0602578103, 1472512, 16675549.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 7723-7728
-
-
Giribet, G.1
Okusu, A.2
Lindgren, A.R.3
Huff, S.W.4
Schrödl, M.5
Nishiguchi, M.K.6
-
116
-
-
0036453528
-
On bivalve phylogeny: A high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data
-
Giribet G, Wheeler W. On bivalve phylogeny: A high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data. Invert Biol 2002, 121:271-324.
-
(2002)
Invert Biol
, vol.121
, pp. 271-324
-
-
Giribet, G.1
Wheeler, W.2
-
117
-
-
84864566049
-
Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca)
-
10.1016/j.ympev.2012.05.025, 22659514
-
Sharma PP, González VL, Kawauchi GY, Andrade SCS, Guzmán A, Collins TM, Glover EA, Harper EM, Healy JM, Mikkelsen PM, Taylor JD, Bieler R, Giribet G. Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca). Mol Phylogenet Evol 2012, 65:64-74. 10.1016/j.ympev.2012.05.025, 22659514.
-
(2012)
Mol Phylogenet Evol
, vol.65
, pp. 64-74
-
-
Sharma, P.P.1
González, V.L.2
Kawauchi, G.Y.3
Andrade, S.C.S.4
Guzmán, A.5
Collins, T.M.6
Glover, E.A.7
Harper, E.M.8
Healy, J.M.9
Mikkelsen, P.M.10
Taylor, J.D.11
Bieler, R.12
Giribet, G.13
-
118
-
-
84872476984
-
Heteroplasmy in a deep-sea protobranch bivalve suggests an ancient origin of doubly uniparental inheritance of mitochondria in Bivalvia
-
Boyle EE, Etter RJ. Heteroplasmy in a deep-sea protobranch bivalve suggests an ancient origin of doubly uniparental inheritance of mitochondria in Bivalvia. Mar Biol 2013, 160:413-422.
-
(2013)
Mar Biol
, vol.160
, pp. 413-422
-
-
Boyle, E.E.1
Etter, R.J.2
-
119
-
-
33845385936
-
Incorporating molecular evolution into phylogenetic analysis, and a New compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
-
Simon C, Buckley TR, Frati F, Stewart JB, Beckenbach AT. Incorporating molecular evolution into phylogenetic analysis, and a New compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annu Rev Ecol Evol Syst 2006, 37:545-579.
-
(2006)
Annu Rev Ecol Evol Syst
, vol.37
, pp. 545-579
-
-
Simon, C.1
Buckley, T.R.2
Frati, F.3
Stewart, J.B.4
Beckenbach, A.T.5
-
120
-
-
0003410015
-
-
Hawaii: Kewalo Marine Laboratory and University of Hawaii
-
Palumbi SR, Martin A, Romano S, McMillan WO, Stice L, Grabowski G. The simple fool's guide to PCR 1996, Hawaii: Kewalo Marine Laboratory and University of Hawaii.
-
(1996)
The simple fool's guide to PCR
-
-
Palumbi, S.R.1
Martin, A.2
Romano, S.3
McMillan, W.O.4
Stice, L.5
Grabowski, G.6
-
121
-
-
70149121516
-
Genetic subdivision of chemosynthetic endosymbionts of Solemya velum along the Southern New England Coast
-
Stewart FJ, Baik AHY, Cavanaugh CM. Genetic subdivision of chemosynthetic endosymbionts of Solemya velum along the Southern New England Coast. Appl Environ Microb 2009, 75:6005-6007.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 6005-6007
-
-
Stewart, F.J.1
Baik, A.H.Y.2
Cavanaugh, C.M.3
-
122
-
-
0037767340
-
Phylogenetic analysis of the subclass Pteriomorpha (Bivalvia) from mtDNA COI sequences
-
10.1016/S1055-7903(03)00013-7, 12742748
-
Matsumoto M. Phylogenetic analysis of the subclass Pteriomorpha (Bivalvia) from mtDNA COI sequences. Mol Phylogenet Evol 2003, 27:429-440. 10.1016/S1055-7903(03)00013-7, 12742748.
-
(2003)
Mol Phylogenet Evol
, vol.27
, pp. 429-440
-
-
Matsumoto, M.1
-
123
-
-
34347222917
-
Sequencing complete mitochondrial and plastid genomes
-
10.1038/nprot.2007.59, 17406621
-
Burger G, Lavrov DV, Forget L, Lang BF. Sequencing complete mitochondrial and plastid genomes. Nat Protoc 2007, 2:603-614. 10.1038/nprot.2007.59, 17406621.
-
(2007)
Nat Protoc
, vol.2
, pp. 603-614
-
-
Burger, G.1
Lavrov, D.V.2
Forget, L.3
Lang, B.F.4
|