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Volumn 57, Issue 1, 2010, Pages 448-454

Comparison of seven Crassostrea mitogenomes and phylogenetic analyses

Author keywords

Crassostrea; Mitochondrial genome; Oysters; Phylogenetic relationship

Indexed keywords

ANIMAL; ARTICLE; CLASSIFICATION; COMPARATIVE GENOMIC HYBRIDIZATION; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; MITOCHONDRIAL GENOME; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OYSTER; PHYLOGENY; SEQUENCE ALIGNMENT;

EID: 77956231683     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2010.05.029     Document Type: Article
Times cited : (65)

References (41)
  • 1
    • 33244495720 scopus 로고    scopus 로고
    • Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications
    • Akasaki T., Nikaido M., Tsuchiya K., Segawa S., Hasegawa M., Okada N. Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications. Mol. Phylogenet. Evol. 2006, 38:648-658.
    • (2006) Mol. Phylogenet. Evol. , vol.38 , pp. 648-658
    • Akasaki, T.1    Nikaido, M.2    Tsuchiya, K.3    Segawa, S.4    Hasegawa, M.5    Okada, N.6
  • 2
    • 0031371067 scopus 로고    scopus 로고
    • Multiple sources of character information and the phylogeny of Hawaiian Drosophilids
    • Baker R.H., DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian Drosophilids. Syst. Biol. 1997, 46:654-673.
    • (1997) Syst. Biol. , vol.46 , pp. 654-673
    • Baker, R.H.1    DeSalle, R.2
  • 3
    • 0028248830 scopus 로고
    • Gametic incompatibility and genetic divergence of Pacific and Kumamoto oysters, Crassostrea gigas and C. Sikamea
    • Banks M.A., McGoldrick D.J., Borgeson W., Hedgecock D. Gametic incompatibility and genetic divergence of Pacific and Kumamoto oysters, Crassostrea gigas and C. Sikamea. Mar. Biol. 1994, 121:127-135.
    • (1994) Mar. Biol. , vol.121 , pp. 127-135
    • Banks, M.A.1    McGoldrick, D.J.2    Borgeson, W.3    Hedgecock, D.4
  • 4
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 1999, 8:1767-1780.
    • (1999) Nucleic Acids Res. , vol.8 , pp. 1767-1780
    • Boore, J.L.1
  • 5
    • 0001298772 scopus 로고    scopus 로고
    • The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals
    • Kluwer Academic Publishers, Dordrecht, D. Sankoff, J.H. Nadeau (Eds.)
    • Boore J.L. The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals. Comparative Genomics 2000, 133-147. Kluwer Academic Publishers, Dordrecht. D. Sankoff, J.H. Nadeau (Eds.).
    • (2000) Comparative Genomics , pp. 133-147
    • Boore, J.L.1
  • 6
    • 3242790356 scopus 로고    scopus 로고
    • Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis
    • Boore J.L., Medina M., Rosenberg L.A. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis. Mol. Biol. Evol. 2004, 21:1492-1503.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1492-1503
    • Boore, J.L.1    Medina, M.2    Rosenberg, L.A.3
  • 7
    • 0032585041 scopus 로고    scopus 로고
    • Differentiation between populations of the Portuguese oyster, Crassostrea angulata (Lamark) and the Pacific oyster, Crassostrea gigas (Thunberg), revealed by mtDNA RFLP analysis
    • Boudry P., Heurtebise S., Collet B., Cornette F., Gérard A. Differentiation between populations of the Portuguese oyster, Crassostrea angulata (Lamark) and the Pacific oyster, Crassostrea gigas (Thunberg), revealed by mtDNA RFLP analysis. J. Exp. Mar. Biol. Ecol. 1998, 226:279-291.
    • (1998) J. Exp. Mar. Biol. Ecol. , vol.226 , pp. 279-291
    • Boudry, P.1    Heurtebise, S.2    Collet, B.3    Cornette, F.4    Gérard, A.5
  • 8
    • 0344530792 scopus 로고    scopus 로고
    • Mitochondrial and nuclear DNA sequence variation of presumed Crassostrea gigas and Crassostrea angulata specimens: a new oyster species in Hong Kong?
    • Boudry P., Heurtebise S., Lapègue S. Mitochondrial and nuclear DNA sequence variation of presumed Crassostrea gigas and Crassostrea angulata specimens: a new oyster species in Hong Kong?. Aquaculture 2003, 228:15-25.
    • (2003) Aquaculture , vol.228 , pp. 15-25
    • Boudry, P.1    Heurtebise, S.2    Lapègue, S.3
  • 9
    • 34547870541 scopus 로고    scopus 로고
    • The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?
    • Breton S., Beaupre H.D., Stewart D.T., Hoeh W.R., Blier P.U. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?. Trends Genet. 2007, 23:465-474.
    • (2007) Trends Genet. , vol.23 , pp. 465-474
    • Breton, S.1    Beaupre, H.D.2    Stewart, D.T.3    Hoeh, W.R.4    Blier, P.U.5
  • 10
    • 0001893274 scopus 로고
    • Intergeneric distances between Ostrea, Crassostrea, and Saccostrea, studied by means of crossed immunoelectrophoresis
    • Brock V. Intergeneric distances between Ostrea, Crassostrea, and Saccostrea, studied by means of crossed immunoelectrophoresis. Mar. Ecol. Prog. Ser. 1990, 68:59-63.
    • (1990) Mar. Ecol. Prog. Ser. , vol.68 , pp. 59-63
    • Brock, V.1
  • 11
    • 52049118280 scopus 로고    scopus 로고
    • A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data
    • Fenn J.D., Song H., Cameron S.L., Whiting M.F. A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data. Mol. Phylogenet. Evol. 2008, 49:59-68.
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 59-68
    • Fenn, J.D.1    Song, H.2    Cameron, S.L.3    Whiting, M.F.4
  • 12
    • 0000889804 scopus 로고
    • Synopsis of the supraspecific classification of living oysters (Bivalvia: Gryphaeidae and Ostreidae)
    • Harry H.W. Synopsis of the supraspecific classification of living oysters (Bivalvia: Gryphaeidae and Ostreidae). Veliger 1985, 28:121-158.
    • (1985) Veliger , vol.28 , pp. 121-158
    • Harry, H.W.1
  • 13
    • 0037218088 scopus 로고    scopus 로고
    • Molecular genetic identification tools for three commercially cultured oysters (Crassostrea belcheri, Crassostrea iredalei and Saccostrea cucullata) in Thailand
    • Klinbunga S., Khamnamtong N., Tassanakajon A., Puanglarp N., Jarayabhand P. Molecular genetic identification tools for three commercially cultured oysters (Crassostrea belcheri, Crassostrea iredalei and Saccostrea cucullata) in Thailand. Mar. Biotechnol. 2003, 5:27-36.
    • (2003) Mar. Biotechnol. , vol.5 , pp. 27-36
    • Klinbunga, S.1    Khamnamtong, N.2    Tassanakajon, A.3    Puanglarp, N.4    Jarayabhand, P.5
  • 14
    • 13544268492 scopus 로고    scopus 로고
    • Evidence for the presence of the Portuguese oyster, Crassostrea angulata, in northern China
    • Lapègue S., Batista F.M., Heurtebise S., Yu Z., Boudry P. Evidence for the presence of the Portuguese oyster, Crassostrea angulata, in northern China. J. Shellfish Res. 2004, 23:759-763.
    • (2004) J. Shellfish Res. , vol.23 , pp. 759-763
    • Lapègue, S.1    Batista, F.M.2    Heurtebise, S.3    Yu, Z.4    Boudry, P.5
  • 16
    • 0030854739 scopus 로고    scopus 로고
    • A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., Eddy S.R. A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 17
    • 28244495220 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica
    • Milbury C.A., Gaffney P.M. Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Mar. Biotechnol. 2005, 7:697-712.
    • (2005) Mar. Biotechnol. , vol.7 , pp. 697-712
    • Milbury, C.A.1    Gaffney, P.M.2
  • 18
    • 44149099802 scopus 로고    scopus 로고
    • Maternal inheritance of mitochondrial DNA (mtDNA) in the pacific oyster (Crassostrea gigas): a preliminary study using mtDNA sequence analysis with evidence of random distribution of MitoTracker-stained sperm mitochondria in fertilized eggs
    • Obata M., Shimizu M., Sano N., Komaru A. Maternal inheritance of mitochondrial DNA (mtDNA) in the pacific oyster (Crassostrea gigas): a preliminary study using mtDNA sequence analysis with evidence of random distribution of MitoTracker-stained sperm mitochondria in fertilized eggs. Zool. Sci. 2008, 25:248-254.
    • (2008) Zool. Sci. , vol.25 , pp. 248-254
    • Obata, M.1    Shimizu, M.2    Sano, N.3    Komaru, A.4
  • 19
    • 59949100674 scopus 로고    scopus 로고
    • Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution
    • Passamonti M., Ghiselli F. Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution. DNA Cell Biol. 2009, 28:79-89.
    • (2009) DNA Cell Biol. , vol.28 , pp. 79-89
    • Passamonti, M.1    Ghiselli, F.2
  • 20
    • 38349163697 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the onychophoran Epiperipatus biolleyi reveals a unique transfer RNA set and provides further support for the ecdysozoa hypothesis
    • Podsiadlowski L., Braband A., Mayer G. The complete mitochondrial genome of the onychophoran Epiperipatus biolleyi reveals a unique transfer RNA set and provides further support for the ecdysozoa hypothesis. Mol. Biol. Evol. 2008, 25:42-51.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 42-51
    • Podsiadlowski, L.1    Braband, A.2    Mayer, G.3
  • 21
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada D., Buckley T. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.2
  • 22
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 23
    • 38349154238 scopus 로고    scopus 로고
    • Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species
    • Reece K.S., Cordes J.F., Stubbs J.B., Hudson K.L., Francis E.A. Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species. Mar. Biol. 2008, 153:709-721.
    • (2008) Mar. Biol. , vol.153 , pp. 709-721
    • Reece, K.S.1    Cordes, J.F.2    Stubbs, J.B.3    Hudson, K.L.4    Francis, E.A.5
  • 24
    • 61949233371 scopus 로고    scopus 로고
    • " Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes
    • Ren J., Liu X., Zhang G., Liu B., Guo X. " Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes. BMC Genomics 2009, 10:84.
    • (2009) BMC Genomics , vol.10 , pp. 84
    • Ren, J.1    Liu, X.2    Zhang, G.3    Liu, B.4    Guo, X.5
  • 25
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 26
    • 0242666315 scopus 로고    scopus 로고
    • Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca)
    • Serb J.M., Lydeard C. Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca). Mol. Biol. Evol. 2003, 20:1854-1866.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1854-1866
    • Serb, J.M.1    Lydeard, C.2
  • 27
    • 35748946010 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome
    • Smith D.R., Snyder M. Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome. J. Mol. Evol. 2007, 65:380-391.
    • (2007) J. Mol. Evol. , vol.65 , pp. 380-391
    • Smith, D.R.1    Snyder, M.2
  • 29
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard P., Wishart D.S. Circular genome visualization and exploration using CGView. Bioinformatics 2005, 21:537-539.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 32
    • 0027028940 scopus 로고
    • Ecomorphology of Crassostrea cucullata (Born, 1778) (Ostreidae) in a mangrove creek (Gazi, Kenya)
    • Tack J.F., Berghe E., Polk P.H. Ecomorphology of Crassostrea cucullata (Born, 1778) (Ostreidae) in a mangrove creek (Gazi, Kenya). Hydrobiologia 1992, 247:109-117.
    • (1992) Hydrobiologia , vol.247 , pp. 109-117
    • Tack, J.F.1    Berghe, E.2    Polk, P.H.3
  • 33
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K., Nei M., Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. USA 2004, 101:11030-11035.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 34
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 35
    • 77049122004 scopus 로고    scopus 로고
    • Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets
    • Wu X., Xu X., Yu Z., Kong X. Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets. BMC Res. Notes 2009, 2:69.
    • (2009) BMC Res. Notes , vol.2 , pp. 69
    • Wu, X.1    Xu, X.2    Yu, Z.3    Kong, X.4
  • 36
    • 77956225726 scopus 로고    scopus 로고
    • Identification, Distribution of Oyster Species from the South China Sea and Development of Microsatellite Markers and Application to Genetic Variation Analysis in Crassostrea hongkongensis. PhD thesis, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, Guangdong Province, China.
    • Xia, J., 2008. Identification, Distribution of Oyster Species from the South China Sea and Development of Microsatellite Markers and Application to Genetic Variation Analysis in Crassostrea hongkongensis. PhD thesis, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, Guangdong Province, China.
    • (2008)
    • Xia, J.1
  • 37
    • 65349100701 scopus 로고    scopus 로고
    • Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis
    • Xia J., Yu Z. Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis. J. Mollus. Stud. 2009, 75:139-146.
    • (2009) J. Mollus. Stud. , vol.75 , pp. 139-146
    • Xia, J.1    Yu, Z.2
  • 38
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: software package for data analysis in molecular biology and evolution
    • Xia X., Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 2001, 92:371-373.
    • (2001) J. Hered. , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 39
    • 0042127128 scopus 로고    scopus 로고
    • Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences
    • Yu Z., Kong X., Zhang L., Guo X., Xiang J. Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences. J. Shellfish Res. 2003, 22:31-38.
    • (2003) J. Shellfish Res. , vol.22 , pp. 31-38
    • Yu, Z.1    Kong, X.2    Zhang, L.3    Guo, X.4    Xiang, J.5
  • 40
    • 55249108232 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis - a case of " Tandem duplication-random loss" for genome rearrangement in Crassostrea?
    • Yu Z., Wei Z., Kong X., Shi W. Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis - a case of " Tandem duplication-random loss" for genome rearrangement in Crassostrea?. BMC Genomics 2008, 9:477.
    • (2008) BMC Genomics , vol.9 , pp. 477
    • Yu, Z.1    Wei, Z.2    Kong, X.3    Shi, W.4
  • 41
    • 28244486853 scopus 로고    scopus 로고
    • Genetic variation in wild and hatchery stocks of the Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers
    • Zhang Q., Allen S.K., Reece K.S. Genetic variation in wild and hatchery stocks of the Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers. Mar. Biotechnol. 2005, 7:588-599.
    • (2005) Mar. Biotechnol. , vol.7 , pp. 588-599
    • Zhang, Q.1    Allen, S.K.2    Reece, K.S.3


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