-
1
-
-
33244495720
-
Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications
-
Akasaki T., Nikaido M., Tsuchiya K., Segawa S., Hasegawa M., Okada N. Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications. Mol. Phylogenet. Evol. 2006, 38:648-658.
-
(2006)
Mol. Phylogenet. Evol.
, vol.38
, pp. 648-658
-
-
Akasaki, T.1
Nikaido, M.2
Tsuchiya, K.3
Segawa, S.4
Hasegawa, M.5
Okada, N.6
-
2
-
-
0031371067
-
Multiple sources of character information and the phylogeny of Hawaiian Drosophilids
-
Baker R.H., DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian Drosophilids. Syst. Biol. 1997, 46:654-673.
-
(1997)
Syst. Biol.
, vol.46
, pp. 654-673
-
-
Baker, R.H.1
DeSalle, R.2
-
3
-
-
0028248830
-
Gametic incompatibility and genetic divergence of Pacific and Kumamoto oysters, Crassostrea gigas and C. Sikamea
-
Banks M.A., McGoldrick D.J., Borgeson W., Hedgecock D. Gametic incompatibility and genetic divergence of Pacific and Kumamoto oysters, Crassostrea gigas and C. Sikamea. Mar. Biol. 1994, 121:127-135.
-
(1994)
Mar. Biol.
, vol.121
, pp. 127-135
-
-
Banks, M.A.1
McGoldrick, D.J.2
Borgeson, W.3
Hedgecock, D.4
-
4
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 1999, 8:1767-1780.
-
(1999)
Nucleic Acids Res.
, vol.8
, pp. 1767-1780
-
-
Boore, J.L.1
-
5
-
-
0001298772
-
The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals
-
Kluwer Academic Publishers, Dordrecht, D. Sankoff, J.H. Nadeau (Eds.)
-
Boore J.L. The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals. Comparative Genomics 2000, 133-147. Kluwer Academic Publishers, Dordrecht. D. Sankoff, J.H. Nadeau (Eds.).
-
(2000)
Comparative Genomics
, pp. 133-147
-
-
Boore, J.L.1
-
6
-
-
3242790356
-
Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis
-
Boore J.L., Medina M., Rosenberg L.A. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis. Mol. Biol. Evol. 2004, 21:1492-1503.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1492-1503
-
-
Boore, J.L.1
Medina, M.2
Rosenberg, L.A.3
-
7
-
-
0032585041
-
Differentiation between populations of the Portuguese oyster, Crassostrea angulata (Lamark) and the Pacific oyster, Crassostrea gigas (Thunberg), revealed by mtDNA RFLP analysis
-
Boudry P., Heurtebise S., Collet B., Cornette F., Gérard A. Differentiation between populations of the Portuguese oyster, Crassostrea angulata (Lamark) and the Pacific oyster, Crassostrea gigas (Thunberg), revealed by mtDNA RFLP analysis. J. Exp. Mar. Biol. Ecol. 1998, 226:279-291.
-
(1998)
J. Exp. Mar. Biol. Ecol.
, vol.226
, pp. 279-291
-
-
Boudry, P.1
Heurtebise, S.2
Collet, B.3
Cornette, F.4
Gérard, A.5
-
8
-
-
0344530792
-
Mitochondrial and nuclear DNA sequence variation of presumed Crassostrea gigas and Crassostrea angulata specimens: a new oyster species in Hong Kong?
-
Boudry P., Heurtebise S., Lapègue S. Mitochondrial and nuclear DNA sequence variation of presumed Crassostrea gigas and Crassostrea angulata specimens: a new oyster species in Hong Kong?. Aquaculture 2003, 228:15-25.
-
(2003)
Aquaculture
, vol.228
, pp. 15-25
-
-
Boudry, P.1
Heurtebise, S.2
Lapègue, S.3
-
9
-
-
34547870541
-
The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?
-
Breton S., Beaupre H.D., Stewart D.T., Hoeh W.R., Blier P.U. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough?. Trends Genet. 2007, 23:465-474.
-
(2007)
Trends Genet.
, vol.23
, pp. 465-474
-
-
Breton, S.1
Beaupre, H.D.2
Stewart, D.T.3
Hoeh, W.R.4
Blier, P.U.5
-
10
-
-
0001893274
-
Intergeneric distances between Ostrea, Crassostrea, and Saccostrea, studied by means of crossed immunoelectrophoresis
-
Brock V. Intergeneric distances between Ostrea, Crassostrea, and Saccostrea, studied by means of crossed immunoelectrophoresis. Mar. Ecol. Prog. Ser. 1990, 68:59-63.
-
(1990)
Mar. Ecol. Prog. Ser.
, vol.68
, pp. 59-63
-
-
Brock, V.1
-
11
-
-
52049118280
-
A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data
-
Fenn J.D., Song H., Cameron S.L., Whiting M.F. A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data. Mol. Phylogenet. Evol. 2008, 49:59-68.
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 59-68
-
-
Fenn, J.D.1
Song, H.2
Cameron, S.L.3
Whiting, M.F.4
-
12
-
-
0000889804
-
Synopsis of the supraspecific classification of living oysters (Bivalvia: Gryphaeidae and Ostreidae)
-
Harry H.W. Synopsis of the supraspecific classification of living oysters (Bivalvia: Gryphaeidae and Ostreidae). Veliger 1985, 28:121-158.
-
(1985)
Veliger
, vol.28
, pp. 121-158
-
-
Harry, H.W.1
-
13
-
-
0037218088
-
Molecular genetic identification tools for three commercially cultured oysters (Crassostrea belcheri, Crassostrea iredalei and Saccostrea cucullata) in Thailand
-
Klinbunga S., Khamnamtong N., Tassanakajon A., Puanglarp N., Jarayabhand P. Molecular genetic identification tools for three commercially cultured oysters (Crassostrea belcheri, Crassostrea iredalei and Saccostrea cucullata) in Thailand. Mar. Biotechnol. 2003, 5:27-36.
-
(2003)
Mar. Biotechnol.
, vol.5
, pp. 27-36
-
-
Klinbunga, S.1
Khamnamtong, N.2
Tassanakajon, A.3
Puanglarp, N.4
Jarayabhand, P.5
-
14
-
-
13544268492
-
Evidence for the presence of the Portuguese oyster, Crassostrea angulata, in northern China
-
Lapègue S., Batista F.M., Heurtebise S., Yu Z., Boudry P. Evidence for the presence of the Portuguese oyster, Crassostrea angulata, in northern China. J. Shellfish Res. 2004, 23:759-763.
-
(2004)
J. Shellfish Res.
, vol.23
, pp. 759-763
-
-
Lapègue, S.1
Batista, F.M.2
Heurtebise, S.3
Yu, Z.4
Boudry, P.5
-
15
-
-
0036018247
-
Trans-Atlantic distribution of a mangrove oyster species revealed by 16S mtDNA and karyological analyses
-
Lapègue S., Boutet I., Leitao A., Heurtebise S., Garcia P., Thiriot-Quievreux C., Boudry P. Trans-Atlantic distribution of a mangrove oyster species revealed by 16S mtDNA and karyological analyses. Biol. Bull. 2002, 202:232-242.
-
(2002)
Biol. Bull.
, vol.202
, pp. 232-242
-
-
Lapègue, S.1
Boutet, I.2
Leitao, A.3
Heurtebise, S.4
Garcia, P.5
Thiriot-Quievreux, C.6
Boudry, P.7
-
16
-
-
0030854739
-
A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe T.M., Eddy S.R. A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25:955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
17
-
-
28244495220
-
Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica
-
Milbury C.A., Gaffney P.M. Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Mar. Biotechnol. 2005, 7:697-712.
-
(2005)
Mar. Biotechnol.
, vol.7
, pp. 697-712
-
-
Milbury, C.A.1
Gaffney, P.M.2
-
18
-
-
44149099802
-
Maternal inheritance of mitochondrial DNA (mtDNA) in the pacific oyster (Crassostrea gigas): a preliminary study using mtDNA sequence analysis with evidence of random distribution of MitoTracker-stained sperm mitochondria in fertilized eggs
-
Obata M., Shimizu M., Sano N., Komaru A. Maternal inheritance of mitochondrial DNA (mtDNA) in the pacific oyster (Crassostrea gigas): a preliminary study using mtDNA sequence analysis with evidence of random distribution of MitoTracker-stained sperm mitochondria in fertilized eggs. Zool. Sci. 2008, 25:248-254.
-
(2008)
Zool. Sci.
, vol.25
, pp. 248-254
-
-
Obata, M.1
Shimizu, M.2
Sano, N.3
Komaru, A.4
-
19
-
-
59949100674
-
Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution
-
Passamonti M., Ghiselli F. Doubly uniparental inheritance: two mitochondrial genomes, one precious model for organelle DNA inheritance and evolution. DNA Cell Biol. 2009, 28:79-89.
-
(2009)
DNA Cell Biol.
, vol.28
, pp. 79-89
-
-
Passamonti, M.1
Ghiselli, F.2
-
20
-
-
38349163697
-
The complete mitochondrial genome of the onychophoran Epiperipatus biolleyi reveals a unique transfer RNA set and provides further support for the ecdysozoa hypothesis
-
Podsiadlowski L., Braband A., Mayer G. The complete mitochondrial genome of the onychophoran Epiperipatus biolleyi reveals a unique transfer RNA set and provides further support for the ecdysozoa hypothesis. Mol. Biol. Evol. 2008, 25:42-51.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 42-51
-
-
Podsiadlowski, L.1
Braband, A.2
Mayer, G.3
-
21
-
-
9644301241
-
Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
-
Posada D., Buckley T. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
-
(2004)
Syst. Biol.
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.2
-
22
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
23
-
-
38349154238
-
Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species
-
Reece K.S., Cordes J.F., Stubbs J.B., Hudson K.L., Francis E.A. Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species. Mar. Biol. 2008, 153:709-721.
-
(2008)
Mar. Biol.
, vol.153
, pp. 709-721
-
-
Reece, K.S.1
Cordes, J.F.2
Stubbs, J.B.3
Hudson, K.L.4
Francis, E.A.5
-
24
-
-
61949233371
-
" Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes
-
Ren J., Liu X., Zhang G., Liu B., Guo X. " Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes. BMC Genomics 2009, 10:84.
-
(2009)
BMC Genomics
, vol.10
, pp. 84
-
-
Ren, J.1
Liu, X.2
Zhang, G.3
Liu, B.4
Guo, X.5
-
25
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
26
-
-
0242666315
-
Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca)
-
Serb J.M., Lydeard C. Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca). Mol. Biol. Evol. 2003, 20:1854-1866.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1854-1866
-
-
Serb, J.M.1
Lydeard, C.2
-
27
-
-
35748946010
-
Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome
-
Smith D.R., Snyder M. Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: evidence of transposition leading to an uncharacteristically large mitochondrial genome. J. Mol. Evol. 2007, 65:380-391.
-
(2007)
J. Mol. Evol.
, vol.65
, pp. 380-391
-
-
Smith, D.R.1
Snyder, M.2
-
28
-
-
40749150134
-
-
Boston University, Boston, MA
-
Sorenson M.D., Franzosa E.A. TreeRot, Version 3 2007, Boston University, Boston, MA.
-
(2007)
TreeRot, Version 3
-
-
Sorenson, M.D.1
Franzosa, E.A.2
-
29
-
-
14644438364
-
Circular genome visualization and exploration using CGView
-
Stothard P., Wishart D.S. Circular genome visualization and exploration using CGView. Bioinformatics 2005, 21:537-539.
-
(2005)
Bioinformatics
, vol.21
, pp. 537-539
-
-
Stothard, P.1
Wishart, D.S.2
-
30
-
-
38349109366
-
Genetic approach to taxonomy of oysters, Ostrea, Crassostrea, and Saccostrea
-
Sudradjat A., Yankson K., Moyse J., Skibinski D.O.F. Genetic approach to taxonomy of oysters, Ostrea, Crassostrea, and Saccostrea. Proc. Int. Sym. Biotechnol. Appl. Aquaculture 1995, 10:239-252.
-
(1995)
Proc. Int. Sym. Biotechnol. Appl. Aquaculture
, vol.10
, pp. 239-252
-
-
Sudradjat, A.1
Yankson, K.2
Moyse, J.3
Skibinski, D.O.F.4
-
32
-
-
0027028940
-
Ecomorphology of Crassostrea cucullata (Born, 1778) (Ostreidae) in a mangrove creek (Gazi, Kenya)
-
Tack J.F., Berghe E., Polk P.H. Ecomorphology of Crassostrea cucullata (Born, 1778) (Ostreidae) in a mangrove creek (Gazi, Kenya). Hydrobiologia 1992, 247:109-117.
-
(1992)
Hydrobiologia
, vol.247
, pp. 109-117
-
-
Tack, J.F.1
Berghe, E.2
Polk, P.H.3
-
33
-
-
3342920601
-
Prospects for inferring very large phylogenies by using the neighbor-joining method
-
Tamura K., Nei M., Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. USA 2004, 101:11030-11035.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11030-11035
-
-
Tamura, K.1
Nei, M.2
Kumar, S.3
-
34
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
35
-
-
77049122004
-
Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets
-
Wu X., Xu X., Yu Z., Kong X. Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae) reveal high level variation of genomic organization and a diversity of transfer RNA gene sets. BMC Res. Notes 2009, 2:69.
-
(2009)
BMC Res. Notes
, vol.2
, pp. 69
-
-
Wu, X.1
Xu, X.2
Yu, Z.3
Kong, X.4
-
36
-
-
77956225726
-
-
Identification, Distribution of Oyster Species from the South China Sea and Development of Microsatellite Markers and Application to Genetic Variation Analysis in Crassostrea hongkongensis. PhD thesis, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, Guangdong Province, China.
-
Xia, J., 2008. Identification, Distribution of Oyster Species from the South China Sea and Development of Microsatellite Markers and Application to Genetic Variation Analysis in Crassostrea hongkongensis. PhD thesis, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, Guangdong Province, China.
-
(2008)
-
-
Xia, J.1
-
37
-
-
65349100701
-
Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis
-
Xia J., Yu Z. Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis. J. Mollus. Stud. 2009, 75:139-146.
-
(2009)
J. Mollus. Stud.
, vol.75
, pp. 139-146
-
-
Xia, J.1
Yu, Z.2
-
38
-
-
0034848170
-
DAMBE: software package for data analysis in molecular biology and evolution
-
Xia X., Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 2001, 92:371-373.
-
(2001)
J. Hered.
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
39
-
-
0042127128
-
Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences
-
Yu Z., Kong X., Zhang L., Guo X., Xiang J. Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences. J. Shellfish Res. 2003, 22:31-38.
-
(2003)
J. Shellfish Res.
, vol.22
, pp. 31-38
-
-
Yu, Z.1
Kong, X.2
Zhang, L.3
Guo, X.4
Xiang, J.5
-
40
-
-
55249108232
-
Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis - a case of " Tandem duplication-random loss" for genome rearrangement in Crassostrea?
-
Yu Z., Wei Z., Kong X., Shi W. Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis - a case of " Tandem duplication-random loss" for genome rearrangement in Crassostrea?. BMC Genomics 2008, 9:477.
-
(2008)
BMC Genomics
, vol.9
, pp. 477
-
-
Yu, Z.1
Wei, Z.2
Kong, X.3
Shi, W.4
-
41
-
-
28244486853
-
Genetic variation in wild and hatchery stocks of the Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers
-
Zhang Q., Allen S.K., Reece K.S. Genetic variation in wild and hatchery stocks of the Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers. Mar. Biotechnol. 2005, 7:588-599.
-
(2005)
Mar. Biotechnol.
, vol.7
, pp. 588-599
-
-
Zhang, Q.1
Allen, S.K.2
Reece, K.S.3
|