BLAST: Improvements for better sequence analysis

Nucleic Acids Research

Volumn 34, Issue WEB. SERV. ISS., 2006, Pages

  Ye, Jian ^a   McGinnis, Scott ^a   Madden, Thomas L ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER GRAPHICS; COMPUTER PROGRAM; INFORMATION PROCESSING; INTERNET; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; COMPUTER INTERFACE; HUMAN; METHODOLOGY; NUCLEIC ACID DATABASE; PROTEIN DATABASE; SYSTEM ANALYSIS;

COMPUTER GRAPHICS; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; HUMANS; INTERNET; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SOFTWARE; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE;

EID: 33747844624     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl164     Document Type: Article

References (6)

1. Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
3. McGinnis,S. and Madden,T.L. (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res., 32, W20-W25.
4. Madden,T.L. (2002) The BLAST sequence analysis tool. In McEntyre,J. (ed.), The NCBI Handbook [Internet]. National Library of Medicine (US), National Center for Biotechnology Information, Bethesda, MD.
5. Schuler,G.D., Epstein,J.A., Ohkawa,H. and Kans,J.A. (1996) Entrez: molecular biology database and retrieval system. Meth. Enzymol., 266, 141-162.
6. Wootton,J.C. and Federhen,S. (1996) Analysis of compositionally biased regions in sequence databases. Meth. Enzymol., 266, 554-571.