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Volumn 20, Issue 4, 2009, Pages 78-87

The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae)

Author keywords

Gene arrangementf; Heterodonta; Meretrix petechialis; Mitochondrial genome; Veneridae

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME RNA; TRANSFER RNA; MITOCHONDRIAL PROTEIN; UNTRANSLATED RNA;

EID: 70349785729     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.1080/19401730902964425     Document Type: Article
Times cited : (31)

References (40)
  • 1
    • 33244495720 scopus 로고    scopus 로고
    • Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications
    • Akasaki T, Nikaido M, Tsuchiya K, Segawa S, Hasegawa M, Okada N. 2006. Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications. Mol Phylogenet Evol 38:648-658.
    • (2006) Mol Phylogenet Evol , vol.38 , pp. 648-658
    • Akasaki, T.1    Nikaido, M.2    Tsuchiya, K.3    Segawa, S.4    Hasegawa, M.5    Okada, N.6
  • 2
    • 0026670562 scopus 로고
    • Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua
    • Arnason E, Rand DM. 1992. Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics 132:211-220.
    • (1992) Genetics , vol.132 , pp. 211-220
    • Arnason, E.1    Rand, D.M.2
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson G. 1999. Tandem repeats finder: A program to analyze DNA sequences. Nucl Acids Res 27:573-580.
    • (1999) Nucl Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 4
    • 33747376866 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda)
    • Boore JL. 2006. The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda). BMC Genomics 7:182.
    • (2006) BMC Genomics , vol.7 , pp. 182
    • Boore, J.L.1
  • 5
    • 0027981455 scopus 로고
    • The complete DNA sequence of the mitochondrial genome of the black chiton Katharina tunicata
    • Boore JL, Brown WM. 1994. The complete DNA sequence of the mitochondrial genome of the black chiton Katharina tunicata. Genetics 138:423-443.
    • (1994) Genetics , vol.138 , pp. 423-443
    • Boore, J.L.1    Brown, W.M.2
  • 6
    • 0033977831 scopus 로고    scopus 로고
    • Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: Sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa
    • Boore JL, Brown WM. 2000. Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: Sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Mol Biol Evol 17:87-106.
    • (2000) Mol Biol Evol , vol.17 , pp. 87-106
    • Boore, J.L.1    Brown, W.M.2
  • 7
    • 3242790356 scopus 로고    scopus 로고
    • Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis
    • Boore JL, Medina M, Rosenberg LA. 2004. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis. Mol Biol Evol 21:1492-1503.
    • (2004) Mol Biol Evol , vol.21 , pp. 1492-1503
    • Boore, J.L.1    Medina, M.2    Rosenberg, L.A.3
  • 8
    • 0024351697 scopus 로고
    • Mitochondrial DNA in the bark weevils: Sizes, structure and heteroplasmy
    • Boyce TM, Zwick ME, Aquadro CF. 1989. Mitochondrial DNA in the bark weevils: Sizes, structure and heteroplasmy. Genetics 123:825-836.
    • (1989) Genetics , vol.123 , pp. 825-836
    • Boyce, T.M.1    Zwick, M.E.2    Aquadro, C.F.3
  • 9
    • 33644761929 scopus 로고    scopus 로고
    • Comparative analysis of gender-associated complete mitochondrial genomes in marine mussels (Mytilus spp.)
    • Breton S, Burger G, Stewart DT, Blier PU. 2006. Comparative analysis of gender-associated complete mitochondrial genomes in marine mussels (Mytilus spp.). Genetics 172:1107-1119.
    • (2006) Genetics , vol.172 , pp. 1107-1119
    • Breton, S.1    Burger, G.2    Stewart, D.T.3    Blier, P.U.4
  • 10
    • 0026640745 scopus 로고
    • Class-level relationships in the phylum Cnidaria: Evidence from mitochondrial genome structure
    • Bridge D, Cunningham CW, Schierwater B, DeSalle R, Buss LW. 1992. Class-level relationships in the phylum Cnidaria: Evidence from mitochondrial genome structure. Proc Natl Acad Sci USA 89:8750-8753.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 8750-8753
    • Bridge, D.1    Cunningham, C.W.2    Schierwater, B.3    Desalle, R.4    Buss, L.W.5
  • 11
    • 0029926549 scopus 로고    scopus 로고
    • Phylogenetic analysis of Veneridae (Bivalvia): Comparison of molecular and palaeontological data
    • Canapa A, Marota I, Rollo F, Olmo E. 1996. Phylogenetic analysis of Veneridae (Bivalvia): Comparison of molecular and palaeontological data. J Mol Evol 43:517-522.
    • (1996) J Mol Evol , vol.43 , pp. 517-522
    • Canapa, A.1    Marota, I.2    Rollo, F.3    Olmo, E.4
  • 12
    • 0037898435 scopus 로고    scopus 로고
    • Molecular data from the 16S rRNA gene for the phylogeny of Veneridae (Mollusca: Bivalvia)
    • Canapa A, Schiaparelli S, Marota I, Barucca M. 2003. Molecular data from the 16S rRNA gene for the phylogeny of Veneridae (Mollusca: Bivalvia). Mar Biol 142:1125-1130.
    • (2003) Mar Biol , vol.142 , pp. 1125-1130
    • Canapa, A.1    Schiaparelli, S.2    Marota, I.3    Barucca, M.4
  • 14
    • 11844258963 scopus 로고    scopus 로고
    • The mitochondrial genome of Biomphalaria glabrata (Gastropoda: Basommatophora), intermediate host of Schistosoma mansoni
    • DeJong RJ, Emery AM, Adema CM. 2004. The mitochondrial genome of Biomphalaria glabrata (Gastropoda: Basommatophora), intermediate host of Schistosoma mansoni. J Parasitol 90:991-997.
    • (2004) J Parasitol , vol.90 , pp. 991-997
    • Dejong, R.J.1    Emery, A.M.2    Adema, C.M.3
  • 15
    • 33748912955 scopus 로고    scopus 로고
    • The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica - And the first record for a putative Atpase subunit 8 gene in marine bivalves
    • Dreyer H, Steiner G. 2006. The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica - and the first record for a putative Atpase subunit 8 gene in marine bivalves. Frontiers Zool 3:13.
    • (2006) Frontiers Zool , vol.3 , pp. 13
    • Dreyer, H.1    Steiner, G.2
  • 16
    • 0031978181 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred II. Error probabilities
    • Ewing B, Green P. 1998. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 17
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred I. accuracy assessment
    • Ewing B, Hillier L, Wendl M, Green P. 1998. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 18
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit i from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3:294-299.
    • (1994) Mol Mar Biol Biotechnol , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 19
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P. 1998. Consed: A graphical tool for sequence finishing. Genome Res 8:195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 20
    • 0024292930 scopus 로고
    • Nucleotide sequence and gene organization of sea urchin mitochondrial DNA
    • Jacobs HT, Elliott DJ, Math VB, Farquharson A. 1988. Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J Mol Biol 202:185-217.
    • (1988) J Mol Biol , vol.202 , pp. 185-217
    • Jacobs, H.T.1    Elliott, D.J.2    Math, V.B.3    Farquharson, A.4
  • 21
    • 0033963849 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: Systematic implication of the genome organization
    • Kurabayashi A, Ueshima R. 2000. Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: Systematic implication of the genome organization. Mol Biol Evol 17:266-277.
    • (2000) Mol Biol Evol , vol.17 , pp. 266-277
    • Kurabayashi, A.1    Ueshima, R.2
  • 22
    • 0000538640 scopus 로고    scopus 로고
    • Paternal mitochondrial DNA differentiation far exceeds maternal mitochondrial DNA and allozyme differentiation in the freshwater mussels, Anodonta grandis grandis
    • Liu HP, Mitton JB, Wu SK. 1996. Paternal mitochondrial DNA differentiation far exceeds maternal mitochondrial DNA and allozyme differentiation in the freshwater mussels, Anodonta grandis grandis. Evolution 50:952-957.
    • (1996) Evolution , vol.50 , pp. 952-957
    • Liu, H.P.1    Mitton, J.B.2    Wu, S.K.3
  • 23
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 0032211421 scopus 로고    scopus 로고
    • Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology
    • Lunt DH, Whipple LE, Hyman BC. 1998. Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology. Mol Ecol 7:1441-1455.
    • (1998) Mol Ecol , vol.7 , pp. 1441-1455
    • Lunt, D.H.1    Whipple, L.E.2    Hyman, B.C.3
  • 25
    • 28244459701 scopus 로고    scopus 로고
    • Mitochondrial DNA sequence and gene organization in the Australian blacklip abalone Haliotis rubra (leach)
    • Maynard BT, Kerr LJ, Mckiernan JM, Jansen ES, Hanna PJ. 2005. Mitochondrial DNA sequence and gene organization in the Australian blacklip abalone Haliotis rubra (leach). Mar Biotechnol 7:645-658.
    • (2005) Mar Biotechnol , vol.7 , pp. 645-658
    • Maynard, B.T.1    Kerr, L.J.2    McKiernan, J.M.3    Jansen, E.S.4    Hanna, P.J.5
  • 26
    • 33750978913 scopus 로고    scopus 로고
    • Phylogeny of Veneroidea (Mollusca: Bivalvia) based on morphology and molecules
    • Mikkelsen PM, Bieler R, Kappner I, Rawlings TA. 2006. Phylogeny of Veneroidea (Mollusca: Bivalvia) based on morphology and molecules. Zool J Linnean Soc 148:439-521.
    • (2006) Zool J Linnean Soc , vol.148 , pp. 439-521
    • Mikkelsen, P.M.1    Bieler, R.2    Kappner, I.3    Rawlings, T.A.4
  • 27
    • 28244495220 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica
    • Milbury CA, Gaffney PM. 2005. Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Mar Biotechnol 7:697-712.
    • (2005) Mar Biotechnol , vol.7 , pp. 697-712
    • Milbury, C.A.1    Gaffney, P.M.2
  • 28
    • 16344377703 scopus 로고    scopus 로고
    • The complete maternal and paternal mitochondrial genomes of the Mediterranean mussel Mytilus galloprovincialis: Implications for the doubly uniparental inheritances mode of mtDNA
    • Mizi A, Zouros E, Moschonas N, Rodakis GC. 2005. The complete maternal and paternal mitochondrial genomes of the Mediterranean mussel Mytilus galloprovincialis: Implications for the doubly uniparental inheritances mode of mtDNA. Mol Biol Evol 22:952-967.
    • (2005) Mol Biol Evol , vol.22 , pp. 952-967
    • Mizi, A.1    Zouros, E.2    Moschonas, N.3    Rodakis, G.C.4
  • 29
    • 0035016876 scopus 로고    scopus 로고
    • Gender-associated mitochondrial DNA heteroplasmy in the venerid clam Tapes philippinarum (Mollusca Bivalvia)
    • Passamonti M, Scalim V. 2001. Gender-associated mitochondrial DNA heteroplasmy in the venerid clam Tapes philippinarum (Mollusca Bivalvia). Curr Genet 39:117-124.
    • (2001) Curr Genet , vol.39 , pp. 117-124
    • Passamonti, M.1    Scalim, V.2
  • 31
    • 0242666315 scopus 로고    scopus 로고
    • Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): An examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca)
    • Serb JM, Lydeard C. 2003. Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): An examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca). Mol Biol Evol 20:1854-1866.
    • (2003) Mol Biol Evol , vol.20 , pp. 1854-1866
    • Serb, J.M.1    Lydeard, C.2
  • 32
    • 0030920779 scopus 로고    scopus 로고
    • Mitochondrial DNA maintenance in vertebrates
    • Shadel GS, ClaytonDA. 1997. Mitochondrial DNA maintenance in vertebrates. Annu Rev Biochem 66:409-435.
    • (1997) Annu Rev Biochem , vol.66 , pp. 409-435
    • Shadel, G.S.1    Clayton, D.A.2
  • 33
    • 35748946010 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: Evidence of transposition leading to an uncharacteristically large mitochondrial genome
    • Smith DR, Snyder M. 2007. Complete mitochondrial DNA sequence of the scallop Placopecten magellanicus: Evidence of transposition leading to an uncharacteristically large mitochondrial genome. J Mol Evol 65:380-391.
    • (2007) J Mol Evol , vol.65 , pp. 380-391
    • Smith, D.R.1    Snyder, M.2
  • 34
    • 0036218106 scopus 로고    scopus 로고
    • The cephalopod Loligo bleekeri mitochondrial genome: Multiplied noncoding regions and transposition of tRNA genes
    • Tomita K, Yokobori S, Oshima T, Ueda T, Watanabe K. 2002. The cephalopod Loligo bleekeri mitochondrial genome: Multiplied noncoding regions and transposition of tRNA genes. J Mol Evol 54:486-500.
    • (2002) J Mol Evol , vol.54 , pp. 486-500
    • Tomita, K.1    Yokobori, S.2    Oshima, T.3    Ueda, T.4    Watanabe, K.5
  • 35
    • 0025899307 scopus 로고
    • Length and sequence variation in evening bat D-loop mtDNA
    • Wilkinson GS, Chapman AM. 1991. Length and sequence variation in evening bat D-loop mtDNA. Genetics 128:607-617.
    • (1991) Genetics , vol.128 , pp. 607-617
    • Wilkinson, G.S.1    Chapman, A.M.2
  • 36
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: Structure and evolution
    • Wolstenholme DR. 1992. Animal mitochondrial DNA: Structure and evolution. Int Rev Cytol 141:73-216.
    • (1992) Int Rev Cytol , vol.141 , pp. 73-216
    • Wolstenholme, D.R.1
  • 37
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 39
    • 6344268961 scopus 로고    scopus 로고
    • Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes
    • Yokobori S, Fukuda N, Nakamura M, Aoyama T, Oshima T. 2004. Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes. Mol Biol Evol 21:2034-2046.
    • (2004) Mol Biol Evol , vol.21 , pp. 2034-2046
    • Yokobori, S.1    Fukuda, N.2    Nakamura, M.3    Aoyama, T.4    Oshima, T.5
  • 40
    • 0027982521 scopus 로고
    • An unusual type of mitochondrial DNA inheritance in the blue mussel Mytilus
    • Zouros E, Ball AO, Saavedra C, Freeman KR. 1994. An unusual type of mitochondrial DNA inheritance in the blue mussel Mytilus. Proc Natl Acad Sci USA 91:7463-7467.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 7463-7467
    • Zouros, E.1    Ball, A.O.2    Saavedra, C.3    Freeman, K.R.4


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