The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae)

Gene

Volumn 353, Issue 2, 2005, Pages 155-168

  Kim, Iksoo ^a   So, Young Cha ^a   Myung, Hee Yoon ^b   Jae, Sam Hwang ^a   Sang, Mong Lee ^c   Hung, Dae Sohn ^d   Jin, Byung Rae ^d  

^a National Institute of Animal Science   (South Korea)

^b Kyungsung University   (South Korea)

^c Myrang National University   (South Korea)

^d Dong A University   (South Korea)

Author keywords

Ensifera; Insect molecular phylogeny; Mitochondrial genome; Oriental mole cricket; Orthoptera

Indexed keywords

ADENINE NUCLEOTIDE; MITOCHONDRIAL DNA; PYRIMIDINE NUCLEOTIDE; TRANSFER RNA;

ARTICLE; CODON USAGE; DNA BASE COMPOSITION; FLY; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; INSECT GENETICS; LEPIDOPTERA; METAZOON; MITOCHONDRIAL GENETICS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOPTERA; PRIORITY JOURNAL; SEQUENCE ANALYSIS; START CODON; TRANSCRIPTION INITIATION;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CODON, INITIATOR; DNA, MITOCHONDRIAL; GENOME; GRYLLIDAE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL; RNA, TRANSFER; SEQUENCE HOMOLOGY, NUCLEIC ACID;

COLEOPTERA; DIPTERA; DROSOPHILA YAKUBA; ENDOPTERYGOTA; ENSIFERA (INSECTS); GRYLLOTALPA ORIENTALIS; GRYLLOTALPIDAE; HEXAPODA; INSECTA; LEPIDOPTERA; LOCUSTA MIGRATORIA; METAZOA; ORTHOPTERA; TRICHOLEPIDION GERTSCHI;

EID: 21744458548     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.04.019     Document Type: Article

References (61)

1. J.S. Bae, I. Kim, H.D. Sohn, and B.R. Jin The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects Mol. Phylogenet. Evol. 32 2004 978 985
2. J.W.O. Ballard Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup J. Mol. Evol. 51 2000 48 63
3. C.B. Beard, D. Mills, and F.H. Collins The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects Insect Mol. Biol. 2 1993 103 124
4. J.L. Boore Animal mitochondrial genomes Nucleic Acids Res. 27 1999 1767 1780
5. T.M. Boyce, M.E. Zwick, and C.F. Aquadro Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy Genetics 123 1989 825 836
6. W.M. Brown The mitochondrial genome of animals R.J. MacIntyre Molecular Evolution Genetics 1985 Plenum New York
7. P. Cantatore, M. Roberti, G. Rainaldi, M.N. Gadaleta, and C. Saccone The complete nucleotide sequence, gene organization, and genetic code of mitochondrial genome of Paracentrotus lividus J. Biol. Chem. 264 1989 10965 10975
8. F.M. Carpenter, and L. Burnham The geological record of insects Annu. Rev. Earth Planet Sci. 13 1985 297 314
9. M.S. Caterino, and F.A.H. Sperling Papilio phylogeny based on mitochondrial cytochrome oxidase I and II genes Mol. Phylogenet. Evol. 11 1999 122 137
10. D.O. Clary, and D.R. Wolstenholme The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code J. Mol. Evol. 22 1985 252 271
11. T.J. Crease The complete sequence of the mitochondrial genome of Daphnia pulex (Cladodera: Crustacea) Gene 233 1999 89 99
12. R.H. Crozier, and Y.C. Crozier The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization Genetics 133 1993 97 117
13. M.H.L. de Bruijn Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code Nature 304 1983 234 241
14. E.M. Dotson, and C.B. Beard Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata Insect Mol. Biol. 10 2001 205 215
15. C.M.R. Fauron, and D.R. Wolstenholme Extensive diversity among Drosophila species with respect to nucleotide sequences within the adenine + thymine-rich region of mitochondrial DNA molecules Nucleic Acids Res. 8 1980 2439 2452
16. J. Felsenstein Evolutionary trees from DNA sequences: a maximum likelihood approach J. Mol. Evol. 17 1981 368 376
17. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
18. W.M. Fitch Toward defining the course of evolution: minimal change for a specific tree topology Syst. Zool. 20 1971 406 416
19. P.K. Flook, and C.H. Rowell Inferences about orthopteroid phylogeny and molecular evolution from small subunit nuclear ribosomal DNA sequences Insect Mol. Biol. 7 1998 163 178
20. P.K. Flook, C.H. Rowell, and G. Gellissen The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome J. Mol. Evol. 41 1995 928 941
21. P.G. Foster, and D.A. Hickey Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions J. Mol. Evol. 41 1999 928 941
22. M. Friedrich, and N. Muqim Sequence and phylogenetic analysis of the complete mitochondrial genome of the flour beetle Tribolium castanaeum Mol. Phylogenet. Evol. 26 2003 502 512
23. M. Friedrich, and D. Tautz Nucleotide composition bias affects amino-acid content in proteins coded by animal mitochondria J. Mol. Evol. 41 1997 928 941
24. A.V. Gorochov Contribution to the system and evolution of the order Orthoptera Zool. Z. 74 1995 39 45
25. M. Hasegawa, H. Kishino, and T. Yano Dating of the human-ape splitting by a molecular clock of mitochondrial DNA J. Mol. Evol. 22 1985 160 174
26. W. Henning Die Stammesgeschichte der Insekten 1969 Kramer Frankfurt am Main, Germany
27. W. Henning Insect Phylogeny 1981 John Wiley and Sons Chichester
28. U.W. Hwang, M. Friedrich, D. Tautz, C.J. Park, and W. Kim Mitochondrial protein phylogeny joins myriapods with chelicerates Nature 413 2001 154 157
29. K. Inohira, T. Hara, and E.T. Matsuura Nucleotide sequence divergence in the A + T-rich region of mitochondrial DNA in Drosophila simulans and Drosophila mauritiana Mol. Biol. Evol. 14 1997 814 822
30. A.C.M. Junqueira The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae) Gene 339 2004 7 15
31. D.K.M. Kevan The higher classification of the orthopteroid insects: a general view Lyman. Entomol. Mus. Res. Lab. Mem. 4 1977 1 31
32. I. Kim Molecular cloning of the sec61p γ subunit homologue gene from the mole cricket, Gryllotalpa orientalis Int. J. Ind. Entomol. 5 2002 73 77
33. I. Kim, K.S. Lee, B.R. Jin, Y.S. Lee, and K.S. Ryu cDNA sequence and mRNA expression of a putative alcohol dehydrogenase from the mole cricket, Gryllotalpa orientalis Int. J. Ind. Entomol. 7 2003 37 44
34. N.P. Kristensen Forty year's insect phylogenetic systematics Zool. Beitr. N. F. 36 1995 83 124
35. J. Kukalová-Peck Fossil history and evolution of hexapod structure I.D. Naumann The Insect of Australia vol. 1 1991 Melbourne University Press Melbourne
36. A. Kurabayashi, and R. Ueshima Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: systematic implication of the genome organization Mol. Biol. Evol. 17 2000 266 277
37. D.V. Lavrov, W.M. Brown, and J.L. Boore A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus Proc. Natl. Acad. Sci. U. S. A. 97 2000 13738 13742
38. D.V. Lavrov, J.L. Boore, and W.M. Brown The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus Mol. Biol. Evol. 17 2000 813 824
39. A.C. Lessinger The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae) Insect Mol. Biol. 9 2000 521 529
40. D.L. Lewis, C.L. Farr, and L.S. Kaguni Drosophila melanogaster mitochondrial DNA, completion of the nucleotide sequence and evolutionary comparisons Insect Mol. Biol. 4 1995 263 278
41. S.E. Mitchell, A.F. Cockburn, and J.A. Seawright The mitochondrial genome of Anopheles quadrimaculatus species A: complete nucleotide sequence and gene organization Genome 36 1993 1058 1073
42. C. Moriz, and W.M. Brown Tandem duplication in animal mitochondrial DNAs: variation in incidence and gene content among lizards Proc. Natl. Acad. Sci. U. S. A. 84 1987 7183 7187
43. F. Nardi, A. Caeapelli, R. Dallai, and F. Frati The mitochondrial genome of the olive fly Bactrocera oleae: two haplotypes from distant geographic locations Insect Mol. Biol. 12 2003 605 611
44. F. Nardi, G. Spinsanti, J.L. Boore, A. Carapelli, R. Dallai, and F. Frati Hexapod origins: monophyletic or paraphyletic? Science 299 2003 1887 1889
45. D. Ojala, J. Montoya, and G. Attardi tRNA punctuation model of RNA processing in human mitochondria Nature 290 1981 470 474
46. S. Renfu, J.H. Nick, H. Campbell, and S.C. Barker Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera) Mol. Biol. Evol. 18 2001 858 865
47. R. Shao, and S.C. Barker The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes Mol. Biol. Evol. 20 2003 362 370
48. R. Shao, N.J. Campbell, E.R. Schmidt, and S.C. Barker Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects Mol. Biol. Evol. 18 2001 1828 1832
49. R. Shao, M. Dowton, A. Murrell, and S.C. Barker Rates of gene rearrangement and nucleotide substitution are correlated in the mitochondrial genomes of insects Mol. Biol. Evol. 20 2003 1612 1619
50. A.G. Sharov Phylogeny of the Orthopteroidea Trans. Paleontol. Inst. Acad. Sci. 118 1968 1 216
51. C. Simon, F. Frati, A. Beckenbach, B. Crespi, H. Liu, and P. Flook Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers Ann. Entomol. Soc. Am. 87 1994 651 701
52. J.B. Stewart, and A.T. Beckenbach Phylogenetic and genomic analysis of the complete mitochondrial DNA sequence of the spotted asparagus beetle Crioceris duodecimpunctata Mol. Phylogenet. Evol. 26 2003 513 526
53. L. Spanos, G. Koutoumbas, M. Kosyfakis, and C. Louis The mitochondrial genome of the Mediterranean fruitfly, Ceratitis capitata Insect Mol. Biol. 9 2000 139 144
54. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4.10. Sinauer Associates, Sunderland, MA (on disk).
55. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 173 216
56. M.F. Whiting Phylogenetic position of the Strepsiptera: review of molecular and morphological evidence Int. J. Insect Morphol. Embryol. 27 1998 53 60
57. K. Wilson, V. Cahill, E. Ballment, and J. Benzie The complete sequence of the mitochondrial genome of the crustacean Penaeus mondon: are malacostracan crustaceans more closely related to insects than to branchiopods? Mol. Biol. Evol. 17 2000 863 874
58. D.R. Wolstenholme Animal mitochondrial DNA: structure and evolution Int. Rev. Cytol. 141 1992 173 216
59. N. Yamazaki Evolution of pulmonate gastropod mitochondrial genomes: comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures Genetics 145 1997 749 758
60. S. Yokobori, and S. Pääbo Transfer RNA editing in land snail mitochondria Proc. Natl. Acad. Sci. U. S. A. 92 1995 10432 10435
61. K. Yukuhiro, H. Sezutsu, M. Itoh, K. Shimizu, and Y. Banno Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silkmoth, Bombyx mandarina, and its close relative, the domesticated silkmoth, Bombyx mori Mol. Biol. Evol. 19 2002 1385 1389