-
1
-
-
0027083319
-
Animal mitochondrial DNA: Structure and evolution
-
Wolstenholme DR. Animal mitochondrial DNA: structure and evolution. Int Rev Cyt. 141:1992;173-216.
-
(1992)
Int Rev Cyt
, vol.141
, pp. 173-216
-
-
Wolstenholme, D.R.1
-
2
-
-
0030920779
-
Mitochondrial DNA maintenance in vertebrates
-
of special interest. A discussion of transcription, DNA repair, and the evidence for recombination of mitochondrial genomes and a thorough review of the mechanisms of mtDNA replication. Emphasis is placed on regulation of replication, including descriptions of the many essential factors imported from the cytoplasm and the regulating cis elements of the mitochondrial control region.
-
Shadel GS, Clayton DA. Mitochondrial DNA maintenance in vertebrates. of special interest Annu Rev Biochem. 66:1997;409-435 A discussion of transcription, DNA repair, and the evidence for recombination of mitochondrial genomes and a thorough review of the mechanisms of mtDNA replication. Emphasis is placed on regulation of replication, including descriptions of the many essential factors imported from the cytoplasm and the regulating cis elements of the mitochondrial control region.
-
(1997)
Annu Rev Biochem
, vol.66
, pp. 409-435
-
-
Shadel, G.S.1
Clayton, D.A.2
-
3
-
-
0026573893
-
The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum
-
Okimoto R, Macfarlane JL, Clay DO, Wolstenholme DR. The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics. 130:1992;471-498.
-
(1992)
Genetics
, vol.130
, pp. 471-498
-
-
Okimoto, R.1
MacFarlane, J.L.2
Clay, D.O.3
Wolstenholme, D.R.4
-
4
-
-
0025851919
-
Repeated sequence sets in mitochondrial DNA molecules of root knot nematodes (Meloidogyne): Nucleotide sequences, genome location and potential for host race identification
-
Okimoto R, Chamberlin HM, Macfarlane JL, Wolstenholme DR. Repeated sequence sets in mitochondrial DNA molecules of root knot nematodes (Meloidogyne): nucleotide sequences, genome location and potential for host race identification. Nucleic Acids Res. 19:1991;1619-1626.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1619-1626
-
-
Okimoto, R.1
Chamberlin, H.M.2
MacFarlane, J.L.3
Wolstenholme, D.R.4
-
5
-
-
0026740213
-
A novel mitochondrial genome organization for the blue mussel, Mytilus edulis
-
Hoffmann RJ, Boore JL, Brown WM. A novel mitochondrial genome organization for the blue mussel, Mytilus edulis. Genetics. 131:1992;397-412.
-
(1992)
Genetics
, vol.131
, pp. 397-412
-
-
Hoffmann, R.J.1
Boore, J.L.2
Brown, W.M.3
-
6
-
-
0031035811
-
Evolution of pulmonate gastropod mitochondrial genomes: Comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures
-
of special interest. The complete mtDNA sequence of Euhadra herklotsi is compared with those published of two other pulmonate snails. Cepaea nemoralis and Albinaria coerulea. There are only a few differences in gene arrangement among these three mtDNAs but nearly every gene is differently located from the arrangements found in other metazoan mtDNAs. Several tRNAs seem to have very strange structures, including the lack of standard arms and many mismatches in the acceptor stems. This latter aberrance may be corrected as RNA editing has been shown for some snails to correct mismatched acceptor stems.
-
Yamazaki N, Ueshima R, Terrett J, Yokobori S-I, Kaifu M, Segawa R, Kobayashi T, Numachi K-I, Ueda T, Nishikawa K, et al. Evolution of pulmonate gastropod mitochondrial genomes: comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures. of special interest Genetics. 145:1997;749-758 The complete mtDNA sequence of Euhadra herklotsi is compared with those published of two other pulmonate snails. Cepaea nemoralis and Albinaria coerulea. There are only a few differences in gene arrangement among these three mtDNAs but nearly every gene is differently located from the arrangements found in other metazoan mtDNAs. Several tRNAs seem to have very strange structures, including the lack of standard arms and many mismatches in the acceptor stems. This latter aberrance may be corrected as RNA editing has been shown for some snails to correct mismatched acceptor stems.
-
(1997)
Genetics
, vol.145
, pp. 749-758
-
-
Yamazaki, N.1
Ueshima, R.2
Terrett, J.3
Yokobori S-I4
Kaifu, M.5
Segawa, R.6
Kobayashi, T.7
Numachi K-I8
Ueda, T.9
Nishikawa, K.10
-
7
-
-
0031979635
-
Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: A possible case of gene transfer from the nucleus to the mitochondrion
-
of outstanding interest. The mitochondrial genome of the soft coral Sarcophyton has been partially sequenced (6995 nt). The genes for ND1, Cytb, ND6, ND3, ND4, ND4L, a methionine tRNA, and IrRNA have been identified, and also a gene not otherwise found in mtDNAs, a homologue to the bacterial mismatch repair enzyme mutS. This is suggested to be a case of transfer of a gene from the nucleus to the mtDNA based on phylogenetic analysis of related sequences, base composition, and the absence of mutS from mtDNAs of related animals. This mtDNA does not share several of the deviations from the universal genetic code commonly found for animal mtDNAs.
-
Pont-Kingdon GA, Okada NA, Macfarlane JL, Beagley CT, Watkins-Sims CD, Cavalier-Smith T, Clark-Walker GD, Wolstenholme DR. Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion. of outstanding interest J Mol Evol. 46:1998;419-431 The mitochondrial genome of the soft coral Sarcophyton has been partially sequenced (6995 nt). The genes for ND1, Cytb, ND6, ND3, ND4, ND4L, a methionine tRNA, and IrRNA have been identified, and also a gene not otherwise found in mtDNAs, a homologue to the bacterial mismatch repair enzyme mutS. This is suggested to be a case of transfer of a gene from the nucleus to the mtDNA based on phylogenetic analysis of related sequences, base composition, and the absence of mutS from mtDNAs of related animals. This mtDNA does not share several of the deviations from the universal genetic code commonly found for animal mtDNAs.
-
(1998)
J Mol Evol
, vol.46
, pp. 419-431
-
-
Pont-Kingdon, G.A.1
Okada, N.A.2
MacFarlane, J.L.3
Beagley, C.T.4
Watkins-Sims, C.D.5
Cavalier-Smith, T.6
Clark-Walker, G.D.7
Wolstenholme, D.R.8
-
8
-
-
0002495627
-
Mitochondrial genomes of Anthozoa (Cnidaria)
-
Palmieri F. Amsterdam: Elsevier
-
Beagley CT, Macfarlane JL, Pont-Kingdon GA, Okimoto R, Okada N, Wolstenholme DR. Mitochondrial genomes of Anthozoa (Cnidaria). Palmieri F. Progress in Cell Research. 5:1995;149-153 Elsevier, Amsterdam.
-
(1995)
Progress in Cell Research
, vol.5
, pp. 149-153
-
-
Beagley, C.T.1
MacFarlane, J.L.2
Pont-Kingdon, G.A.3
Okimoto, R.4
Okada, N.5
Wolstenholme, D.R.6
-
9
-
-
0031972433
-
The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): Introns, a paucity of tRNA genes, and a near-standard genetic code
-
of outstanding interest. The mtDNA of a sea anemone contains both rRNA genes and the 13 protein genes typically found in animal mtDNA but, like some other cnidarians, is lacking many tRNA genes. Only two are present, those for methionine and tryptophan. Unusual too is the finding that there are two introns: one in COI that encodes a putative endonuclease and one in ND5 that contains the ND1 and ND3 genes.
-
Beagley CT, Okimoto R, Wolstenholme DR. The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): introns, a paucity of tRNA genes, and a near-standard genetic code. of outstanding interest Genetics. 148:1998;1091-1108 The mtDNA of a sea anemone contains both rRNA genes and the 13 protein genes typically found in animal mtDNA but, like some other cnidarians, is lacking many tRNA genes. Only two are present, those for methionine and tryptophan. Unusual too is the finding that there are two introns: one in COI that encodes a putative endonuclease and one in ND5 that contains the ND1 and ND3 genes.
-
(1998)
Genetics
, vol.148
, pp. 1091-1108
-
-
Beagley, C.T.1
Okimoto, R.2
Wolstenholme, D.R.3
-
10
-
-
0027981455
-
The complete DNA sequence of the mitochondrial genome of the Black Chiton Katharina tunicata
-
Boore JL, Brown WM. The complete DNA sequence of the mitochondrial genome of the Black Chiton Katharina tunicata. Genetics. 138:1994;423-443.
-
(1994)
Genetics
, vol.138
, pp. 423-443
-
-
Boore, J.L.1
Brown, W.M.2
-
11
-
-
0025343497
-
Sequence and gene organization of the chicken mitochondrial genome: A novel gene order in higher vertebrates
-
Desjardins P, Morais R. Sequence and gene organization of the chicken mitochondrial genome: a novel gene order in higher vertebrates. J Mol Biol. 212:1990;599-634.
-
(1990)
J Mol Biol
, vol.212
, pp. 599-634
-
-
Desjardins, P.1
Morais, R.2
-
12
-
-
1842378594
-
The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds
-
Harlid A, Janke A, Arnason U. The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds. Mol Biol Evol. 14:1997;754-761.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 754-761
-
-
Harlid, A.1
Janke, A.2
Arnason, U.3
-
13
-
-
0031810766
-
The complete mitochondrial genome of Rhea americana and early avian divergences
-
Harlid A, Janke A, Arnasson U. The complete mitochondrial genome of Rhea americana and early avian divergences. J Mol Evol. 46:1998;669-679.
-
(1998)
J Mol Evol
, vol.46
, pp. 669-679
-
-
Harlid, A.1
Janke, A.2
Arnasson, U.3
-
14
-
-
0027361711
-
Sequence evolution in and around the mitochondrial control region in birds
-
Quinn TW, Wilson AC. Sequence evolution in and around the mitochondrial control region in birds. J Mol Evol. 37:1993;417-425.
-
(1993)
J Mol Evol
, vol.37
, pp. 417-425
-
-
Quinn, T.W.1
Wilson, A.C.2
-
15
-
-
0029096503
-
Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
-
Kumazawa Y, Nishida M. Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers. Mol Biol Evol. 12:1995;759-772.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 759-772
-
-
Kumazawa, Y.1
Nishida, M.2
-
16
-
-
0028270434
-
The marsupial mitochondiral genome and the evolution of placental mammals
-
Janke A, Feldmaier-Fuchs G, Thomas WK, Von Haeseler A, Pääbo S. The marsupial mitochondiral genome and the evolution of placental mammals. Genetics. 137:1994;243-256.
-
(1994)
Genetics
, vol.137
, pp. 243-256
-
-
Janke, A.1
Feldmaier-Fuchs, G.2
Thomas, W.K.3
Von Haeseler, A.4
Pääbo, S.5
-
17
-
-
0031026266
-
The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotrema, Marsupialia, and Eutheria
-
Janke A, Xu X, Arnason U. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotrema, Marsupialia, and Eutheria. Proc Natl Acad Sci USA. 94:1991;1276-1281.
-
(1991)
Proc Natl Acad Sci USA
, vol.94
, pp. 1276-1281
-
-
Janke, A.1
Xu, X.2
Arnason, U.3
-
18
-
-
0026329585
-
Rearrangements of mitochondrial transfer RNA genes in marsupials
-
Pääbo S, Thomas WK, Whitfield KM, Kumazawa Y, Wilson AC. Rearrangements of mitochondrial transfer RNA genes in marsupials. J Mol Evol. 33:1991;426-430.
-
(1991)
J Mol Evol
, vol.33
, pp. 426-430
-
-
Pääbo, S.1
Thomas, W.K.2
Whitfield, K.M.3
Kumazawa, Y.4
Wilson, A.C.5
-
19
-
-
0024962173
-
The complete nucleotide sequence, gene order and genetic code of the mitochondrial genome of Paracentrotus lividus
-
Cantatore P, Roberti M, Rainaldi G, Gadaleta MN, Saccone C. The complete nucleotide sequence, gene order and genetic code of the mitochondrial genome of Paracentrotus lividus. J Biol Chem. 264:1989;10965-10975.
-
(1989)
J Biol Chem
, vol.264
, pp. 10965-10975
-
-
Cantatore, P.1
Roberti, M.2
Rainaldi, G.3
Gadaleta, M.N.4
Saccone, C.5
-
20
-
-
0024292930
-
Nucleotide sequence and gene organization of sea urchin mitochondrial DNA
-
Jacobs HT, Elliott DJ, Math VB, Farquarson A. Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J Mol Biol. 202:1988;185-217.
-
(1988)
J Mol Biol
, vol.202
, pp. 185-217
-
-
Jacobs, H.T.1
Elliott, D.J.2
Math, V.B.3
Farquarson, A.4
-
21
-
-
0030122559
-
Complete sequence of the mitochondrial DNA in the sea urchin Arabacia lixula: Conserved features of the echinoid mitochondrial genome
-
De Giorgi C, Martiradonna A, Lanave C, Saccone C. Complete sequence of the mitochondrial DNA in the sea urchin Arabacia lixula: Conserved features of the echinoid mitochondrial genome. Mol Phylogen Evol. 5:1996;323-332.
-
(1996)
Mol Phylogen Evol
, vol.5
, pp. 323-332
-
-
De Giorgi, C.1
Martiradonna, A.2
Lanave, C.3
Saccone, C.4
-
22
-
-
0029069238
-
Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome
-
Asakawa S, Himeno H, Miura K, Watanabe K. Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome. Genetics. 140:1995;1047-1060.
-
(1995)
Genetics
, vol.140
, pp. 1047-1060
-
-
Asakawa, S.1
Himeno, H.2
Miura, K.3
Watanabe, K.4
-
23
-
-
0027301017
-
The phylogeny of echinoderm classes based on mitochondrial gene arrangements
-
Smith MJ, Arndt A, Gorski S, Fajber E. The phylogeny of echinoderm classes based on mitochondrial gene arrangements. J Mol Evol. 36:1993;545-554.
-
(1993)
J Mol Evol
, vol.36
, pp. 545-554
-
-
Smith, M.J.1
Arndt, A.2
Gorski, S.3
Fajber, E.4
-
24
-
-
0028976102
-
Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
-
Boore JL, Collins TM, Stanton D, Daehler LL, Brown WM. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature. 376:1995;163-165.
-
(1995)
Nature
, vol.376
, pp. 163-165
-
-
Boore, J.L.1
Collins, T.M.2
Stanton, D.3
Daehler, L.L.4
Brown, W.M.5
-
25
-
-
0032537194
-
Gene translocation links insects and crustaceans
-
of outstanding interest. An inversion of a tRNA gene for leucine along with its translocation to a position ~2.5 kb distant characterizes the mtDNAs of four crustaceans (representing four orders) and 134 insects (representing 10 orders). This movement is from a location where it is found in two chelicerates, four myriapods, an onychophoran, and a tardigrade, inferred to be the primitive state since this location is shared with many lesser related taxa, including Pogonophora, Annelida, Echiura, and Mollusca. Complete gene arrangements are known for six arthropod genera, which vary only in the location of a few tRNA genes. This analysis strongly supports an insect-crustacean clade, and requires significant reinterpretation of the pattern of arthropod evolution (e.g. the features shared between myriapods and insects must be viewed as convergent adaptations to life on land).
-
Boore JL, Lavrov D, Brown WM. Gene translocation links insects and crustaceans. of outstanding interest Nature. 393:1998;667-668 An inversion of a tRNA gene for leucine along with its translocation to a position ~2.5 kb distant characterizes the mtDNAs of four crustaceans (representing four orders) and 134 insects (representing 10 orders). This movement is from a location where it is found in two chelicerates, four myriapods, an onychophoran, and a tardigrade, inferred to be the primitive state since this location is shared with many lesser related taxa, including Pogonophora, Annelida, Echiura, and Mollusca. Complete gene arrangements are known for six arthropod genera, which vary only in the location of a few tRNA genes. This analysis strongly supports an insect-crustacean clade, and requires significant reinterpretation of the pattern of arthropod evolution (e.g. the features shared between myriapods and insects must be viewed as convergent adaptations to life on land).
-
(1998)
Nature
, vol.393
, pp. 667-668
-
-
Boore, J.L.1
Lavrov, D.2
Brown, W.M.3
-
26
-
-
0003094804
-
Mitochondrial genome organization
-
C.S. III Levings, Vasil I.K. Boston: Kluwer Academic Publishers
-
Wolstenholme DR, Fauron C. Mitochondrial genome organization. Levings CS III, Vasil IK. The Molecular Biology of Plant Mitochondria. 1-59:1995;Kluwer Academic Publishers, Boston.
-
(1995)
The Molecular Biology of Plant Mitochondria
, vol.159
-
-
Wolstenholme, D.R.1
Fauron, C.2
-
27
-
-
0002160837
-
Gene transfer from organelles to the nucleus: How much, what happens, and why?
-
of outstanding interest. Mitochondria evolved from an ensymboitc organism. From the greatly reduced gene content of mtDNA as compared with the bacteria to which they're related, one might conclude that a great number of genes have been transferred to the nucleus, with many of their protein products being imported to function within the mitocondrion. Here, the authors review the factors influencing such gene transfer in plants and discusses issues such as the potential fates of a gene once transferred to the nucleus, specific cases where this has occurred, and the possible advantages for gene regulation of being in one or the other compartment.
-
Martin W, Herrmann G. Gene transfer from organelles to the nucleus: how much, what happens, and why? of outstanding interest Plant Physiol. 118:1998;9-17 Mitochondria evolved from an ensymboitc organism. From the greatly reduced gene content of mtDNA as compared with the bacteria to which they're related, one might conclude that a great number of genes have been transferred to the nucleus, with many of their protein products being imported to function within the mitocondrion. Here, the authors review the factors influencing such gene transfer in plants and discusses issues such as the potential fates of a gene once transferred to the nucleus, specific cases where this has occurred, and the possible advantages for gene regulation of being in one or the other compartment.
-
(1998)
Plant Physiol
, vol.118
, pp. 9-17
-
-
Martin, W.1
Herrmann, G.2
-
28
-
-
0030961691
-
Origin and evolution of mitochondria: What have we learnt from red algae?
-
of outstanding interest. The authors review the structure, gene content, genetic code, and RNA editing of mitochondrial systems, with a strong emphasis on those of protists. They review the support for the endosymbiotic origin of mitochondria and propose a broad phylogeny based on comparisons of the inferred amino acid sequences of mitochondrial genes.
-
Leblanc C, Richard O, Kloareg B, Viehmann S, Zetsche K, Boyen C. Origin and evolution of mitochondria: what have we learnt from red algae? of outstanding interest Curr Genet. 31:1997;193-207 The authors review the structure, gene content, genetic code, and RNA editing of mitochondrial systems, with a strong emphasis on those of protists. They review the support for the endosymbiotic origin of mitochondria and propose a broad phylogeny based on comparisons of the inferred amino acid sequences of mitochondrial genes.
-
(1997)
Curr Genet
, vol.31
, pp. 193-207
-
-
Leblanc, C.1
Richard, O.2
Kloareg, B.3
Viehmann, S.4
Zetsche, K.5
Boyen, C.6
-
29
-
-
0031007907
-
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
-
of outstanding interest. The complete sequence of the 69,034 nt mitochondrial genome of the fresh-water protozoan Reclinomonas americana reveals features that are reminiscent of a eubacterial genome. It contains 97 genes, the largest number found in any mtDNA so far, including genes for 5S rRNA, the RNA component of RNase P, a multisubunit, eubacterial-type RNA polymerase and at least 18 proteins unique among mtDNAs studied to date. It appears that this mtDNA has retained more of the features of the original endosymbiont genome than any other mtDNA so far studied.
-
Lang BF, Burger G, O'Kelly CJ, Cedergren R, Golding B, Lemieux C, Sankoff D, Turmel M, Gray M. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. of outstanding interest Nature. 387:1997;493-497 The complete sequence of the 69,034 nt mitochondrial genome of the fresh-water protozoan Reclinomonas americana reveals features that are reminiscent of a eubacterial genome. It contains 97 genes, the largest number found in any mtDNA so far, including genes for 5S rRNA, the RNA component of RNase P, a multisubunit, eubacterial-type RNA polymerase and at least 18 proteins unique among mtDNAs studied to date. It appears that this mtDNA has retained more of the features of the original endosymbiont genome than any other mtDNA so far studied.
-
(1997)
Nature
, vol.387
, pp. 493-497
-
-
Lang, B.F.1
Burger, G.2
O'Kelly, C.J.3
Cedergren, R.4
Golding, B.5
Lemieux, C.6
Sankoff, D.7
Turmel, M.8
Gray, M.9
-
30
-
-
18344398178
-
Genome structure and gene content in protist mitochondrial DNAs
-
of outstanding interest. To date, 23 complete protists mtDNA sequences have been determined, many through the efforts coordinated by the Organelle Genome Megasequencing Project (OGMP). Comparisons of their genome structure, gene content and arrangement, structures of rRNAs and tRNAs, and genetic code are allowing inferences about the original mitochondrial genome that descended from an endosymbiotic prokaryote.
-
Gray MW, Lang BF, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage E, Littlejohn TG, et al. Genome structure and gene content in protist mitochondrial DNAs. of outstanding interest Nucleic Acids Res. 15:1998;865-878 To date, 23 complete protists mtDNA sequences have been determined, many through the efforts coordinated by the Organelle Genome Megasequencing Project (OGMP). Comparisons of their genome structure, gene content and arrangement, structures of rRNAs and tRNAs, and genetic code are allowing inferences about the original mitochondrial genome that descended from an endosymbiotic prokaryote.
-
(1998)
Nucleic Acids Res
, vol.15
, pp. 865-878
-
-
Gray, M.W.1
Lang, B.F.2
Cedergren, R.3
Golding, G.B.4
Lemieux, C.5
Sankoff, D.6
Turmel, M.7
Brossard, N.8
Delage, E.9
Littlejohn, T.G.10
-
31
-
-
0030993742
-
The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression
-
of outstanding interest. The fungal mitochondrial genome project is a coordinated effort to sequence complete mtDNAs of a representative sample of the major fungal lineages. Studies compare genome structure, gene content, gene arrangement, and gene expression mechanisms. Here is a review of its accomplishments, including issues of phylogenetic analysis, intron evolution, mobile DNA elements, and RNA editing.
-
Paquin B, Laforest M-J, Forget L, Roewer I, Wang Z, Longcore J, Lang BF. The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. of outstanding interest Curr Genet. 31:1997;380-395 The fungal mitochondrial genome project is a coordinated effort to sequence complete mtDNAs of a representative sample of the major fungal lineages. Studies compare genome structure, gene content, gene arrangement, and gene expression mechanisms. Here is a review of its accomplishments, including issues of phylogenetic analysis, intron evolution, mobile DNA elements, and RNA editing.
-
(1997)
Curr Genet
, vol.31
, pp. 380-395
-
-
Paquin, B.1
Laforest M-J2
Forget, L.3
Roewer, I.4
Wang, Z.5
Longcore, J.6
Lang, B.F.7
-
32
-
-
0031932429
-
Evolution of mitochondrial DNA in yeast: Gene order and structural organization of the mitochondrial genome of Saccharomyces uvarum
-
of outstanding interest. The gene arrangement of S. uvarum mtDNA is determined and compared to those of seven other fungal species, reconstructing the probable ancestral arrangements.
-
Cardazzo B, Minuzzo S, Sartori G, Grapputo A, Carignani G. Evolution of mitochondrial DNA in yeast: gene order and structural organization of the mitochondrial genome of Saccharomyces uvarum. of outstanding interest Curr Genet. 33:1998;52-59 The gene arrangement of S. uvarum mtDNA is determined and compared to those of seven other fungal species, reconstructing the probable ancestral arrangements.
-
(1998)
Curr Genet
, vol.33
, pp. 52-59
-
-
Cardazzo, B.1
Minuzzo, S.2
Sartori, G.3
Grapputo, A.4
Carignani, G.5
-
33
-
-
0027501821
-
Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology
-
Eernisse DJ, Kluge AG. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology. Mol Biol Evol. 10:1993;1170-1195.
-
(1993)
Mol Biol Evol
, vol.10
, pp. 1170-1195
-
-
Eernisse, D.J.1
Kluge, A.G.2
-
34
-
-
0023480940
-
Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
-
Moritz C, Dowling TE, Brown WM. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu Rev Ecol Syst. 18:1987;269-292.
-
(1987)
Annu Rev Ecol Syst
, vol.18
, pp. 269-292
-
-
Moritz, C.1
Dowling, T.E.2
Brown, W.M.3
-
35
-
-
0023256559
-
Slipped strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson G, Gutman G. Slipped strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol. 4:1987;203-221.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.2
-
36
-
-
0029909927
-
Gene rearrangements in snake mitochondrial genomes: Highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster
-
Kumazawa Y, Ota H, Nishida M, Ozawa T. Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Mol Biol Evol. 13:1996;1242-1254.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 1242-1254
-
-
Kumazawa, Y.1
Ota, H.2
Nishida, M.3
Ozawa, T.4
-
37
-
-
0031696736
-
The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
-
of special interest. This snake mtDNA has duplicate non-coding regions that have completely identical sequences 1 kb in length. One of these is in the position typical of vertebrate mtDNAs and the other is flanked on one side by a translocated tRNA (for leucine) and on the other by a pseudogene of the tRNA for proline. The functional tRNA gene for proline is in the same relative location to the first non-coding sequence. This implicates duplication of the non-coding region in mechanisms of gene rearrangement.
-
Kumazawa Y, Ota H, Nishida M, Ozawa T. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. of special interest Genetics. 150:1998;313-329 This snake mtDNA has duplicate non-coding regions that have completely identical sequences 1 kb in length. One of these is in the position typical of vertebrate mtDNAs and the other is flanked on one side by a translocated tRNA (for leucine) and on the other by a pseudogene of the tRNA for proline. The functional tRNA gene for proline is in the same relative location to the first non-coding sequence. This implicates duplication of the non-coding region in mechanisms of gene rearrangement.
-
(1998)
Genetics
, vol.150
, pp. 313-329
-
-
Kumazawa, Y.1
Ota, H.2
Nishida, M.3
Ozawa, T.4
-
38
-
-
0031012089
-
Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
-
of outstanding interest. This reports the arrangements of a cluster of tRNA genes in a frog and several reptiles, neatly summarizing all known variations in vertebrate mitochondrial gene arrangements, and offering insightful analysis of potential mechanisms and constraints on rearrangements.
-
Macey JR, Larson A, Ananjeva NB, Fang Z, Papenfuss TJ. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. of outstanding interest Mol Biol Evol. 14:1997;91-104 This reports the arrangements of a cluster of tRNA genes in a frog and several reptiles, neatly summarizing all known variations in vertebrate mitochondrial gene arrangements, and offering insightful analysis of potential mechanisms and constraints on rearrangements.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 91-104
-
-
MacEy, J.R.1
Larson, A.2
Ananjeva, N.B.3
Fang, Z.4
Papenfuss, T.J.5
-
39
-
-
0031984285
-
Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement
-
of special interest. MtDNA of the reptile Bipes biporus has a tandem duplication of two tRNA genes, with one having become a pseudogene. This appears to be an intermediate in the duplication/random-loss model of gene rearrangement discussed above.
-
Macey JR, Schulte JA, Larson A, Papenfuss TJ. Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement. of special interest Mol Biol Evol. 15:1998;71-75 MtDNA of the reptile Bipes biporus has a tandem duplication of two tRNA genes, with one having become a pseudogene. This appears to be an intermediate in the duplication/random-loss model of gene rearrangement discussed above.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 71-75
-
-
MacEy, J.R.1
Schulte, J.A.2
Larson, A.3
Papenfuss, T.J.4
-
40
-
-
0031904632
-
Mitochondrial gene rearrangement in the sea cucumber genus Cucumaria
-
of outstanding interest. In this sea cucumber, there seems to have been a primitive duplication of the large cluster of tRNA genes commonly found in echinoderm mtDNAs along with the translocation of one duplicated cluster to another region of the genome. This, it is reasoned, was followed by the random losses of one of each pair of the duplicated tRNAs, leaving behind, in each case, a vestige in the form of short non-coding sequences. This appears to be an intermediate state in the duplication/random-loss model of rearrangement discussed above.
-
Arndt A, Smith MJ. Mitochondrial gene rearrangement in the sea cucumber genus Cucumaria. of outstanding interest Mol Biol Evol. 15:1998;1009-1016 In this sea cucumber, there seems to have been a primitive duplication of the large cluster of tRNA genes commonly found in echinoderm mtDNAs along with the translocation of one duplicated cluster to another region of the genome. This, it is reasoned, was followed by the random losses of one of each pair of the duplicated tRNAs, leaving behind, in each case, a vestige in the form of short non-coding sequences. This appears to be an intermediate state in the duplication/random-loss model of rearrangement discussed above.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1009-1016
-
-
Arndt, A.1
Smith, M.J.2
-
41
-
-
0030953174
-
Animal mitochondrial DNA recombination
-
of special interest. This is the first report of direct evidence for intramolecular recombination in animal mtDNA. Although recombination had been previously demonstrated in plant, protist, and fungal mtDNAs, it had been generally accepted that recombination did not occur among mtDNAs of animals. This study uses a PCR-based strategy to detect end-products of recombination ('mini-circles') within the highly repeated sequence elements in the mtDNA of the nematode Meloidogyne javonica.
-
Lunt D, Hyman B. Animal mitochondrial DNA recombination. of special interest Nature. 387:1997;247 This is the first report of direct evidence for intramolecular recombination in animal mtDNA. Although recombination had been previously demonstrated in plant, protist, and fungal mtDNAs, it had been generally accepted that recombination did not occur among mtDNAs of animals. This study uses a PCR-based strategy to detect end-products of recombination ('mini-circles') within the highly repeated sequence elements in the mtDNA of the nematode Meloidogyne javonica.
-
(1997)
Nature
, vol.387
, pp. 247
-
-
Lunt, D.1
Hyman, B.2
-
42
-
-
0020608833
-
The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcription units
-
Montoya J, Gaines G, Attardi G. The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcription units. Cell. 34:1983;151-159.
-
(1983)
Cell
, vol.34
, pp. 151-159
-
-
Montoya, J.1
Gaines, G.2
Attardi, G.3
-
43
-
-
0022760932
-
Two overlapping genes in bovine mitochondrial DNA encode membrane components of ATP synthase
-
Fearnley IM, Walker JE. Two overlapping genes in bovine mitochondrial DNA encode membrane components of ATP synthase. EMBO J. 5:1986;2003-2008.
-
(1986)
EMBO J
, vol.5
, pp. 2003-2008
-
-
Fearnley, I.M.1
Walker, J.E.2
-
44
-
-
0030152955
-
The sequence of the meadow grasshopper (Chorthippus parallelus) mitochondrial srRNA, ND2, COI, COII, ATPase8 and 9 tRNA genes
-
Szymura J, Lunt D, Hewittt G. The sequence of the meadow grasshopper (Chorthippus parallelus) mitochondrial srRNA, ND2, COI, COII, ATPase8 and 9 tRNA genes. Insect Mol Biol. 5:1996;127-139.
-
(1996)
Insect Mol Biol
, vol.5
, pp. 127-139
-
-
Szymura, J.1
Lunt, D.2
Hewittt, G.3
-
45
-
-
0027398565
-
The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization
-
Crozier RH, Crozier YC. The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics. 133:1993;97-117.
-
(1993)
Genetics
, vol.133
, pp. 97-117
-
-
Crozier, R.H.1
Crozier, Y.C.2
-
46
-
-
0032169857
-
Multiple independent origins of mitochondrial gene order in birds
-
of special interest
-
Mindell DP, Sorenson MD, Dimcheff DE. Multiple independent origins of mitochondrial gene order in birds. of special interest Proc Natl Acad Sci USA. 95:1998;10693-10697 For several years, it has been known that a number of birds share a unique gene rearrangement involving an exchange of position between the blocks ND6-E and Cytb-T-P (single letters refering to the one-letter amino acid code for the corresponding tRNA gene). This study determines the arrangements of all of these genes for a few birds and of a subset of them for many birds, identifying exactly two arrangements. When these arrangements are plotted on a phylogenetic tree of Aves, it is apparent that one arrangement was acquired independently from the other in multiple lineages. Although the authors argue for independent gene translocations, this differs only semantically from independent translocations of a non-coding region; if all non-coding regions are ignored, both gene arrangements found in these birds are identical. It is also possible that a rearrangement event occurred early in the evolution of Aves that included a duplication of the large non-coding region - a condition suspected in mediating gene rearrangements of other mtDNAs - with the apparent convergence seen here being explained by random losses of these duplicated non-coding regions. This study raises very interesting questions regarding the potential for convergence of mitochondrial gene arrangement.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 10693-10697
-
-
Mindell, D.P.1
Sorenson, M.D.2
Dimcheff, D.E.3
-
47
-
-
0024425725
-
Rapid segregation of heteroplasmic bovine mitochondria
-
Ashley M, Laipis P, Hauswirth W. Rapid segregation of heteroplasmic bovine mitochondria. Nucleic Acids Res. 17:1989;7325-7331.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7325-7331
-
-
Ashley, M.1
Laipis, P.2
Hauswirth, W.3
-
48
-
-
0023493631
-
Segregation of mitochondria in the cytoplasm of Xenopus vitellogenic oocytes
-
Mignotte F, Tourte M, Mounolou J-C. Segregation of mitochondria in the cytoplasm of Xenopus vitellogenic oocytes. Biol Cell. 60:1987;97-102.
-
(1987)
Biol Cell
, vol.60
, pp. 97-102
-
-
Mignotte, F.1
Tourte, M.2
Mounolou J-C3
-
50
-
-
0026680446
-
Gene order comparisons for phylogenetic interference: Evolution of the mitochondrial genome
-
Sankoff D, Leduc G, Antoine N, Paquin B, Lang BF, Cedergren R. Gene order comparisons for phylogenetic interference: evolution of the mitochondrial genome. Proc Natl Acad Sci USA. 89:1992;6575-6579.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 6575-6579
-
-
Sankoff, D.1
Leduc, G.2
Antoine, N.3
Paquin, B.4
Lang, B.F.5
Cedergren, R.6
|