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Volumn 4, Issue 4, 2011, Pages 263-271

Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome

Author keywords

Meretrix lamarckii; Mitochondrial genome; New distribution; Veneridae

Indexed keywords

PRIMER DNA;

EID: 84855976494     PISSN: 18747787     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.margen.2011.06.006     Document Type: Article
Times cited : (23)

References (38)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F., Zardoya R., Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 3
    • 77953286665 scopus 로고    scopus 로고
    • Characterization of amitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): identification of the missing ATPase 8 gene
    • Breton S., Stewart D.T., Hoeh W.R. Characterization of amitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): identification of the missing ATPase 8 gene. Mar. Geonomics 2010, 3:11-18.
    • (2010) Mar. Geonomics , vol.3 , pp. 11-18
    • Breton, S.1    Stewart, D.T.2    Hoeh, W.R.3
  • 4
    • 34347222917 scopus 로고    scopus 로고
    • Sequencing complete mitochondrial and plastid genomes
    • Burger G., Lavrov D.V., Forget L., Lang B.F. Sequencing complete mitochondrial and plastid genomes. Nat. Protoc. 2007, 2:603-614.
    • (2007) Nat. Protoc. , vol.2 , pp. 603-614
    • Burger, G.1    Lavrov, D.V.2    Forget, L.3    Lang, B.F.4
  • 6
    • 78149274434 scopus 로고    scopus 로고
    • Phylogenetic relationships of the genus Meretrix (Mollusca: Veneridae) based on mitochondrial COI gene sequences
    • Chen A., Li Z., Feng G. Phylogenetic relationships of the genus Meretrix (Mollusca: Veneridae) based on mitochondrial COI gene sequences. Zoolog. Res. 2009, 30:233-239.
    • (2009) Zoolog. Res. , vol.30 , pp. 233-239
    • Chen, A.1    Li, Z.2    Feng, G.3
  • 8
    • 0031978181 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B., Green P. Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8:186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 9
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M., Green P. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8:175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 10
    • 84855969760 scopus 로고
    • Revision des vivanuts de Meretrixs s. s. du museum national d' histoire naturelle
    • Fischer-Piette E. Revision des vivanuts de Meretrixs s. s. du museum national d' histoire naturelle. J. Conchyliol 1941, 84:315-344.
    • (1941) J. Conchyliol , vol.84 , pp. 315-344
    • Fischer-Piette, E.1
  • 11
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh R., Lutz R.A., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, R.3    Lutz, R.A.4    Vrijenhoek, R.5
  • 12
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D., Abajian C., Green P. Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8:195-202.
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 13
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 15
    • 0024486266 scopus 로고
    • Animal mitochondrial DNA as a genetic marker in population and evolutionary biology
    • Harrison R.G. Animal mitochondrial DNA as a genetic marker in population and evolutionary biology. Trends Ecol. Evol. 1989, 4:6-11.
    • (1989) Trends Ecol. Evol. , vol.4 , pp. 6-11
    • Harrison, R.G.1
  • 16
    • 80052448710 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the hard clam Meretrix meretrix
    • He C., Wang J., Gao X., Song W., Li H., Li Y., Liu W., Su H. The complete mitochondrial genome of the hard clam Meretrix meretrix. Mol. Biol. Rep. 2011, 10.1007/s11033-010-0449-8.
    • (2011) Mol. Biol. Rep.
    • He, C.1    Wang, J.2    Gao, X.3    Song, W.4    Li, H.5    Li, Y.6    Liu, W.7    Su, H.8
  • 17
    • 0026740213 scopus 로고
    • A novel mitochondrial genome organization for the blue mussel, Mytilus edulis
    • Hoffmann R.J., Boore J.L., Brown W.M. A novel mitochondrial genome organization for the blue mussel, Mytilus edulis. Genetics 1992, 131:397-412.
    • (1992) Genetics , vol.131 , pp. 397-412
    • Hoffmann, R.J.1    Boore, J.L.2    Brown, W.M.3
  • 18
    • 3442881066 scopus 로고
    • A synopsis of the family Veneridae. Part I and II
    • Jukes-Browne A.J. A synopsis of the family Veneridae. Part I and II. Proc. Malac. Soc. Lond. 1914, 11:58-94.
    • (1914) Proc. Malac. Soc. Lond. , vol.11 , pp. 58-94
    • Jukes-Browne, A.J.1
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 20
    • 38349180130 scopus 로고    scopus 로고
    • ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
    • Laslett D., Canbäck B. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics 2008, 24:172-175.
    • (2008) Bioinformatics , vol.24 , pp. 172-175
    • Laslett, D.1    Canbäck, B.2
  • 21
    • 1442283747 scopus 로고    scopus 로고
    • Phylogenetic position of the Pentastomida and (pan) crustacean relationships
    • Lavrov D.V., Brown W.M., Boore J.L. Phylogenetic position of the Pentastomida and (pan) crustacean relationships. Proc. Biol. Sci. 2004, 271:537-544.
    • (2004) Proc. Biol. Sci. , vol.271 , pp. 537-544
    • Lavrov, D.V.1    Brown, W.M.2    Boore, J.L.3
  • 22
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 23
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 28244495220 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica
    • Milbury C.A., Gaffney P.M. Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Mar. Biotechnol. 2005, 7:697-712.
    • (2005) Mar. Biotechnol. , vol.7 , pp. 697-712
    • Milbury, C.A.1    Gaffney, P.M.2
  • 25
    • 33748978884 scopus 로고    scopus 로고
    • China Ocean Press, Beijing, China
    • Qi Z. Seashells of China 2004, 306. China Ocean Press, Beijing, China.
    • (2004) Seashells of China , pp. 306
    • Qi, Z.1
  • 26
    • 0024637614 scopus 로고
    • Molecular population genetics of mtDNA size variation in crickets
    • Rand D.M., Harrison R.G. Molecular population genetics of mtDNA size variation in crickets. Genetics 1989, 121:551-569.
    • (1989) Genetics , vol.121 , pp. 551-569
    • Rand, D.M.1    Harrison, R.G.2
  • 27
    • 70349785729 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae)
    • Ren J., Shen X., Sun M., Jiang F., Yu Y., Chi Z., Liu B. The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae). Mitochondrial DNA 2009, 20:78-87.
    • (2009) Mitochondrial DNA , vol.20 , pp. 78-87
    • Ren, J.1    Shen, X.2    Sun, M.3    Jiang, F.4    Yu, Y.5    Chi, Z.6    Liu, B.7
  • 28
    • 0242666315 scopus 로고    scopus 로고
    • Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca)
    • Serb J.M., Lydeard C. Complete mtDNA sequence of the North American freshwater mussel, Lampsilis ornata (Unionidae): an examination of the evolution and phylogenetic utility of mitochondrial genome organization in Bivalvia (Mollusca). Mol. Biol. Evol. 2003, 20:1854-1866.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1854-1866
    • Serb, J.M.1    Lydeard, C.2
  • 29
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard P., Wishart D.S. Circular genome visualization and exploration using CGView. Bioinformatics 2005, 21:537-539.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 78649905901 scopus 로고    scopus 로고
    • Complete mtDNA of Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region
    • Wang H., Zhang S., Li Y., Liu B. Complete mtDNA of Meretrix lusoria (Bivalvia: Veneridae) reveals the presence of an atp8 gene, length variation and heteroplasmy in the control region. Comp. Biochem. Physiol. 2010, 5:256-264.
    • (2010) Comp. Biochem. Physiol. , vol.5 , pp. 256-264
    • Wang, H.1    Zhang, S.2    Li, Y.3    Liu, B.4
  • 34
    • 0027014050 scopus 로고
    • Genetic novelties in mitochondrial genomes of multicellular animals
    • Wolstenholme D.R. Genetic novelties in mitochondrial genomes of multicellular animals. Curr. Opin. Genet. Dev. 1992, 2:918-925.
    • (1992) Curr. Opin. Genet. Dev. , vol.2 , pp. 918-925
    • Wolstenholme, D.R.1
  • 35
    • 45749145172 scopus 로고    scopus 로고
    • Genetic relationships among species of Meretrix (Mollusca: Veneridae) in the western Pacific Ocean
    • Yamakawa A.Y., Yamaguchi M., Imai H. Genetic relationships among species of Meretrix (Mollusca: Veneridae) in the western Pacific Ocean. Pac. Sci. 2008, 62:385-394.
    • (2008) Pac. Sci. , vol.62 , pp. 385-394
    • Yamakawa, A.Y.1    Yamaguchi, M.2    Imai, H.3
  • 36
    • 78649906959 scopus 로고    scopus 로고
    • Taxonomic study on Meretrix (Mollusca: Bivalvia) from Thailand
    • Yoosukh W., Matsukuma A. Taxonomic study on Meretrix (Mollusca: Bivalvia) from Thailand. Spec. Publ. Phuket. Mar. Biol. Cent. 2001, 25:451-460.
    • (2001) Spec. Publ. Phuket. Mar. Biol. Cent. , vol.25 , pp. 451-460
    • Yoosukh, W.1    Matsukuma, A.2
  • 38
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.