메뉴 건너뛰기




Volumn 165, Issue 2, 2003, Pages 735-745

Likelihood Analysis of Asymmetrical Mutation Bias Gradients in Vertebrate Mitochondrial Genomes

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; DNA BINDING PROTEIN; HYPOXANTHINE; MITOCHONDRIAL DNA;

EID: 0242318326     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (81)

References (35)
  • 2
    • 0025881012 scopus 로고
    • Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes
    • ASAKAWA, S., Y. KUMAZAWA, T. ARAKI, H. HIMENO, K. MIURA et al., 1991 Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes. J. Mol. Evol. 32: 511-520.
    • (1991) J. Mol. Evol. , vol.32 , pp. 511-520
    • Asakawa, S.1    Kumazawa, Y.2    Araki, T.3    Himeno, H.4    Miura, K.5
  • 3
    • 0036671452 scopus 로고    scopus 로고
    • Mutation patterns of mitochondrial H- and L-strand DNA in closely related Cyprinid fishes
    • BIELAWSKI, J. P., and J. R. GOLD, 2002 Mutation patterns of mitochondrial H- and L-strand DNA in closely related Cyprinid fishes. Genetics 161: 1589-1597.
    • (2002) Genetics , vol.161 , pp. 1589-1597
    • Bielawski, J.P.1    Gold, J.R.2
  • 4
    • 0033646639 scopus 로고    scopus 로고
    • Transcription and replication of mitochondrial DNA
    • CLAYTON, D. A., 2000 Transcription and replication of mitochondrial DNA. Hum. Reprod. 15: 11-17.
    • (2000) Hum. Reprod. , vol.15 , pp. 11-17
    • Clayton, D.A.1
  • 5
    • 0026005173 scopus 로고
    • Codon usage is imposed by the gene location in the transcription unit
    • DELORME, M. O., and A. HENAUT, 1991 Codon usage is imposed by the gene location in the transcription unit. Curr. Genet. 20: 353-358.
    • (1991) Curr. Genet. , vol.20 , pp. 353-358
    • Delorme, M.O.1    Henaut, A.2
  • 6
    • 0030976320 scopus 로고    scopus 로고
    • Strand asymmetries in DNA evolution
    • FRANCINO, M. P., and H. OCHMAN, 1997 Strand asymmetries in DNA evolution. Trends Genet. 13: 240-245.
    • (1997) Trends Genet. , vol.13 , pp. 240-245
    • Francino, M.P.1    Ochman, H.2
  • 7
    • 0025344222 scopus 로고
    • A sensitive genetic assay for the detection of cytosine deamination: Determination of rate constants and the activation energy
    • FREDERICO, L. A., T. A. KUNKEL and B. R. SHAW, 1990 A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy. Biochemistry 29: 2532-2537.
    • (1990) Biochemistry , vol.29 , pp. 2532-2537
    • Frederico, L.A.1    Kunkel, T.A.2    Shaw, B.R.3
  • 8
    • 0033918896 scopus 로고    scopus 로고
    • Lineage-specific evolutionary rate in mammalian mtDNA
    • GISSI, C., A. REYES, C. PESOLE and C. SACCONE, 2000 Lineage-specific evolutionary rate in mammalian mtDNA. Mol. Biol. Evol. 17: 1022-1031.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1022-1031
    • Gissi, C.1    Reyes, A.2    Pesole, C.3    Saccone, C.4
  • 9
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA, M., H. KISHINO and T. YANO, 1985 Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 10
    • 0034598918 scopus 로고    scopus 로고
    • Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA
    • HOLT, I. J., H. E. LORIMER and H. T. JACOBS, 2000 Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA. Cell 100: 515-524.
    • (2000) Cell , vol.100 , pp. 515-524
    • Holt, I.J.1    Lorimer, H.E.2    Jacobs, H.T.3
  • 11
    • 0025790276 scopus 로고
    • The spectrum of spontaneous mutations in a Saccharomyces cerevisiae uracil-DNA-glycosylase mutant limits the function of this enzyme to cytosine deamination repair
    • IMPELLIZZERI, K. J., B. ANDERSON and P. M. BURGERS, 1991 The spectrum of spontaneous mutations in a Saccharomyces cerevisiae uracil-DNA-glycosylase mutant limits the function of this enzyme to cytosine deamination repair. J. Bacteriol. 173: 6807-6810.
    • (1991) J. Bacteriol. , vol.173 , pp. 6807-6810
    • Impellizzeri, K.J.1    Anderson, B.2    Burgers, P.M.3
  • 12
    • 0028308288 scopus 로고
    • Analysis of directional mutation pressure and nucleotide content in mitochondrial cytochrome b genes
    • JERMIIN, L. S., D. GRAUR, R. M. LOWE and R. H. CROZIER, 1994 Analysis of directional mutation pressure and nucleotide content in mitochondrial cytochrome b genes. J. Mol. Evol. 39: 160-173.
    • (1994) J. Mol. Evol. , vol.39 , pp. 160-173
    • Jermiin, L.S.1    Graur, D.2    Lowe, R.M.3    Crozier, R.H.4
  • 13
    • 0029000323 scopus 로고
    • Evidence from analyses of intergenic regions for strand-specific directional mutation pressure in metazoan mitochondrial DNA
    • JERMIIN, L. S., D. GRAUR and R. H. CROZIER, 1995 Evidence from analyses of intergenic regions for strand-specific directional mutation pressure in metazoan mitochondrial DNA. Mol. Biol. Evol. 12: 558-563.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 558-563
    • Jermiin, L.S.1    Graur, D.2    Crozier, R.H.3
  • 14
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • LANAVE, C., G. PREPARATA, C. SACCONE and C. SERIO, 1984 A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20: 86-93.
    • (1984) J. Mol. Evol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, C.4
  • 15
    • 0021665968 scopus 로고
    • Demonstration of a sudden change in the use of codons in the vicinity of transcription termination
    • LIMAIEM, J., and A. HENAUT, 1984a Demonstration of a sudden change in the use of codons in the vicinity of transcription termination. Crit. Rev. Acad. Sci. III 299: 275-280.
    • (1984) Crit. Rev. Acad. Sci. III , vol.299 , pp. 275-280
    • Limaiem, J.1    Henaut, A.2
  • 16
    • 0021368739 scopus 로고
    • Fluctuation of the incidence of the 4 bases along the mitochondrial genome of mammals using correspondence factorial analysis
    • LIMAIEM, J., and A. HENAUT, 1984b Fluctuation of the incidence of the 4 bases along the mitochondrial genome of mammals using correspondence factorial analysis. Crit. Rev. Acad. Sci. III 298: 279-286.
    • (1984) Crit. Rev. Acad. Sci. III , vol.298 , pp. 279-286
    • Limaiem, J.1    Henaut, A.2
  • 17
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • LINDAHL, T., 1993 Instability and decay of the primary structure of DNA. Nature 362: 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 18
    • 0024541837 scopus 로고
    • Mitochondrial DNA mutations as an important contributor to ageing and degenerative diseases
    • LINNANE, A. W., S. MARZUKI, T. OZAWA and M. TANAKA, 1989 Mitochondrial DNA mutations as an important contributor to ageing and degenerative diseases. Lancet 1: 642-645.
    • (1989) Lancet , vol.1 , pp. 642-645
    • Linnane, A.W.1    Marzuki, S.2    Ozawa, T.3    Tanaka, M.4
  • 19
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • LOBRY, J. R., 1996 Asymmetric substitution patterns in the two DNA strands of bacteria. Mol. Biol. Evol. 13: 660-665.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 660-665
    • Lobry, J.R.1
  • 20
    • 0029049426 scopus 로고
    • Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
    • PERNA, N. T., and T. D. KOCHER, 1995 Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41: 353-358.
    • (1995) J. Mol. Evol. , vol.41 , pp. 353-358
    • Perna, N.T.1    Kocher, T.D.2
  • 21
    • 0033635920 scopus 로고    scopus 로고
    • Assessing an unknown evolutionary process: Effect of increasing site-specific knowledge through taxon addition
    • POLLOCK, D. D., and W. J. BRUNO, 2000 Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition. Mol. Biol. Evol. 17: 1854-1858.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1854-1858
    • Pollock, D.D.1    Bruno, W.J.2
  • 22
    • 0033639232 scopus 로고    scopus 로고
    • A case for evolutionary genomics and the comprehensive examination of sequence biodiversity
    • POLLOCK, D. D., J. A. EISEN, N. A. DOGGETT and M. P. CUMMINGS, 2000 A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Mol. Biol. Evol. 17: 1776-1788.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1776-1788
    • Pollock, D.D.1    Eisen, J.A.2    Doggett, N.A.3    Cummings, M.P.4
  • 23
    • 0033967692 scopus 로고    scopus 로고
    • Introducing RefSeq and LocusLink: Curated human genome resources at the NCBI
    • PRUITT, K. D., K. S. KATZ, H. SICOTTE and D. R. MAGLOTT, 2000 Introducing RefSeq and LocusLink: curated human genome resources at the NCBI. Trends Genet. 16: 44-47.
    • (2000) Trends Genet. , vol.16 , pp. 44-47
    • Pruitt, K.D.1    Katz, K.S.2    Sicotte, H.3    Maglott, D.R.4
  • 24
    • 0031950474 scopus 로고    scopus 로고
    • Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
    • REYES, A., C. GISSI, G. PESOLE and C. SACCONE, 1998 Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol. Biol. Evol. 15: 957-966.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 957-966
    • Reyes, A.1    Gissi, C.2    Pesole, G.3    Saccone, C.4
  • 26
    • 0030920779 scopus 로고    scopus 로고
    • Mitochondrial DNA maintenance in vertebrates
    • SHADEL, G. S., and D. A. CLAYTON, 1997 Mitochondrial DNA maintenance in vertebrates. Annu. Rev. Biochem. 66: 409-435.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 409-435
    • Shadel, G.S.1    Clayton, D.A.2
  • 27
    • 3643052747 scopus 로고
    • On the genetic basis of variation and heterogeneity of DNA base composition
    • SUEOKA, N., 1962 On the genetic basis of variation and heterogeneity of DNA base composition, Proc. Natl. Acad. Sci. USA 48: 582-592.
    • (1962) Proc. Natl. Acad. Sci. USA , vol.48 , pp. 582-592
    • Sueoka, N.1
  • 28
    • 0029880314 scopus 로고    scopus 로고
    • The effect of topology on estimates of among-site rate variation
    • SULLIVAN, J., K. E. HOLSINGER and C. SIMON, 1996 The effect of topology on estimates of among-site rate variation. J. Mol. Evol. 42: 308-312.
    • (1996) J. Mol. Evol. , vol.42 , pp. 308-312
    • Sullivan, J.1    Holsinger, K.E.2    Simon, C.3
  • 30
    • 0027966917 scopus 로고
    • Strand asymmetry in human mitochondrial DNA mutations
    • TANAKA, M., and T. OZAWA, 1994 Strand asymmetry in human mitochondrial DNA mutations. Genomics 22: 327-335.
    • (1994) Genomics , vol.22 , pp. 327-335
    • Tanaka, M.1    Ozawa, T.2
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 0033525773 scopus 로고    scopus 로고
    • Mitochondrial diseases in man and mouse
    • WALLACE, D. C., 1999 Mitochondrial diseases in man and mouse. Science 283: 1482-1488.
    • (1999) Science , vol.283 , pp. 1482-1488
    • Wallace, D.C.1
  • 33
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: Structure and evolution
    • WOLSTENHOLME, D. R., 1992 Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141: 173-216.
    • (1992) Int. Rev. Cytol. , vol.141 , pp. 173-216
    • Wolstenholme, D.R.1
  • 34
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 35
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
    • YANG, Z., N. GOLDMAN and A. FRIDAY, 1994 Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Mol. Biol. Evol. 11: 316-324.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 316-324
    • Yang, Z.1    Goldman, N.2    Friday, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.