메뉴 건너뛰기




Volumn 164, Issue 5, 2013, Pages 425-438

Metagenomics of kamchatkan hot spring filaments reveal two new major (hyper) thermophilic lineages related to thaumarchaeota

Author keywords

Ammonia oxidation; Archaea; Caldiarchaeum subterraneum; Hot thaumarchaeota related clade; Hyperthermophily; Phylogeny

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; LARGE SUBUNIT RIBOSOMAL RNA; RIBOSOME RNA; RNA 5S; SMALL SUBUNIT RIBOSOMAL RNA;

EID: 84878665978     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2013.02.006     Document Type: Article
Times cited : (26)

References (102)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 1995, 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 52049083257 scopus 로고    scopus 로고
    • RNA strand: the RNA secondary structure and statistical analysis database
    • Andronescu M., Bereg V., Hoos H.H., Condon A. RNA strand: the RNA secondary structure and statistical analysis database. BMC Bioinform. 2008, 9:340.
    • (2008) BMC Bioinform. , vol.9 , pp. 340
    • Andronescu, M.1    Bereg, V.2    Hoos, H.H.3    Condon, A.4
  • 3
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns S.M., Delwiche C.F., Palmer J.D., Pace N.R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. U S A 1996, 93:9188-9193.
    • (1996) Proc. Natl. Acad. Sci. U S A , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 4
    • 79952050667 scopus 로고    scopus 로고
    • Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
    • Blainey P.C., Mosier A.C., Potanina A., Francis C.A., Quake S.R. Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLOS One 2011, 6:e16626.
    • (2011) PLOS One , vol.6
    • Blainey, P.C.1    Mosier, A.C.2    Potanina, A.3    Francis, C.A.4    Quake, S.R.5
  • 5
    • 57749185463 scopus 로고    scopus 로고
    • Parallel adaptations to high temperatures in the Archaeaneon
    • Boussau B., Blanquart S., Necsulea A., Lartillot N., Gouy M. Parallel adaptations to high temperatures in the Archaeaneon. Nature 2008, 456:942-945.
    • (2008) Nature , vol.456 , pp. 942-945
    • Boussau, B.1    Blanquart, S.2    Necsulea, A.3    Lartillot, N.4    Gouy, M.5
  • 6
    • 25144485401 scopus 로고    scopus 로고
    • Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?
    • Brochier C., Gribaldo S., Zivanovic Y., Confalonieri F., Forterre P. Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?. Genome Biol. 2005, 6:R42.
    • (2005) Genome Biol. , vol.6
    • Brochier, C.1    Gribaldo, S.2    Zivanovic, Y.3    Confalonieri, F.4    Forterre, P.5
  • 7
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet C., Boussau B., Gribaldo S., Forterre P. Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat. Rev. Microbiol. 2008, 6:245-252.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3    Forterre, P.4
  • 13
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong E.F. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. U S A 1992, 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. U S A , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 14
    • 80051930035 scopus 로고    scopus 로고
    • Ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium in two US Great Basin hot springs with abundant ammonia-oxidizing Archaea
    • Dodsworth J.A., Hungate B.A., Hedlund B.P. Ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium in two US Great Basin hot springs with abundant ammonia-oxidizing Archaea. Environ. Microbiol. 2011, 13:2371-2386.
    • (2011) Environ. Microbiol. , vol.13 , pp. 2371-2386
    • Dodsworth, J.A.1    Hungate, B.A.2    Hedlund, B.P.3
  • 17
    • 0034175943 scopus 로고    scopus 로고
    • Reverse gyrase from hyperthermophiles: probable transfer of a thermoadaptation trait from archaea to bacteria
    • Forterre P., Bouthier De La Tour C., Philippe H., Duguet M. Reverse gyrase from hyperthermophiles: probable transfer of a thermoadaptation trait from archaea to bacteria. Trends Genet. 2000, 16:152-154.
    • (2000) Trends Genet. , vol.16 , pp. 152-154
    • Forterre, P.1    Bouthier De La Tour, C.2    Philippe, H.3    Duguet, M.4
  • 19
    • 67651039738 scopus 로고    scopus 로고
    • The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods
    • Foster P.G., Cox C.J., Embley T.M. The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philos. Trans. R. Soc. Lond. B, Biol. Sci. 2009, 364:2197-2207.
    • (2009) Philos. Trans. R. Soc. Lond. B, Biol. Sci. , vol.364 , pp. 2197-2207
    • Foster, P.G.1    Cox, C.J.2    Embley, T.M.3
  • 21
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman J.A., McCallum K., Davis A.A. Novel major archaebacterial group from marine plankton. Nature 1992, 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 22
    • 0037140949 scopus 로고    scopus 로고
    • Substrate recognition by 2-oxoacid:ferredoxin oxidoreductase from Sulfolobus sp. strain 7
    • Fukuda E., Wakagi T. Substrate recognition by 2-oxoacid:ferredoxin oxidoreductase from Sulfolobus sp. strain 7. Biochim. Biophys. Acta 2002, 1597:74-80.
    • (2002) Biochim. Biophys. Acta , vol.1597 , pp. 74-80
    • Fukuda, E.1    Wakagi, T.2
  • 23
    • 0030900384 scopus 로고    scopus 로고
    • Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
    • Galtier N., Lobry J.R. Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J. Mol. Evol. 1997, 44:632-636.
    • (1997) J. Mol. Evol. , vol.44 , pp. 632-636
    • Galtier, N.1    Lobry, J.R.2
  • 24
    • 0033534584 scopus 로고    scopus 로고
    • A nonhyperthermophilic common ancestor to extant life forms
    • Galtier N., Tourasse N., Gouy M. A nonhyperthermophilic common ancestor to extant life forms. Science 1999, 283:220-221.
    • (1999) Science , vol.283 , pp. 220-221
    • Galtier, N.1    Tourasse, N.2    Gouy, M.3
  • 27
    • 77957134043 scopus 로고    scopus 로고
    • The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
    • Gribaldo S., Poole A.M., Daubin V., Forterre P., Brochier-Armanet C. The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?. Nat. Rev. Microbiol. 2010, 8:743-752.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 743-752
    • Gribaldo, S.1    Poole, A.M.2    Daubin, V.3    Forterre, P.4    Brochier-Armanet, C.5
  • 28
    • 80052160609 scopus 로고    scopus 로고
    • Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea
    • Groussin M., Gouy M. Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea. Mol. Biol. Evol. 2011, 28:2661-2674.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2661-2674
    • Groussin, M.1    Gouy, M.2
  • 30
    • 82355180998 scopus 로고    scopus 로고
    • The archaeal 'TACK' superphylum and the origin of eukaryotes
    • Guy L., Ettema T.J. The archaeal 'TACK' superphylum and the origin of eukaryotes. Trends Microbiol. 2011, 19:580-587.
    • (2011) Trends Microbiol. , vol.19 , pp. 580-587
    • Guy, L.1    Ettema, T.J.2
  • 33
    • 0037007636 scopus 로고    scopus 로고
    • A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
    • Huber H., Hohn M.J., Rachel R., Fuchs T., Wimmer V.C., Stetter K.O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 2002, 417:63-67.
    • (2002) Nature , vol.417 , pp. 63-67
    • Huber, H.1    Hohn, M.J.2    Rachel, R.3    Fuchs, T.4    Wimmer, V.C.5    Stetter, K.O.6
  • 34
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber T., Faulkner G., Hugenholtz P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 2004, 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 35
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz P., Pitulle C., Hershberger K.L., Pace N.R. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 1998, 180:366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 36
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
    • Jobb G., von Haeseler A., Strimmer K. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 2004, 4:18.
    • (2004) BMC Evol. Biol. , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 38
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner M.B., DeLong E.F., Karl D.M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 2001, 409:507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 39
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 40
    • 84874964884 scopus 로고    scopus 로고
    • Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
    • Kelly S., Wickstead B., Gull K. Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes. Proc. Biol. Sci. 2011, 278:1009-1018.
    • (2011) Proc. Biol. Sci. , vol.278 , pp. 1009-1018
    • Kelly, S.1    Wickstead, B.2    Gull, K.3
  • 41
    • 0001219297 scopus 로고
    • Pyruvate:ferredoxin oxidoreductase - new findings on an ancient enzyme
    • Kerscher L., Oesterhelt D. Pyruvate:ferredoxin oxidoreductase - new findings on an ancient enzyme. Trends Biochem. Sci. 1982, 7:371-374.
    • (1982) Trends Biochem. Sci. , vol.7 , pp. 371-374
    • Kerscher, L.1    Oesterhelt, D.2
  • 42
    • 80053598581 scopus 로고    scopus 로고
    • Genome sequence of an ammonia-oxidizing soil archaeon, " Candidatus Nitrosoarchaeum koreensis" MY1
    • Kim B.K., Jung M.Y., Yu D.S., Park S.J., Oh T.K., Rhee S.K., Kim J.F. Genome sequence of an ammonia-oxidizing soil archaeon, " Candidatus Nitrosoarchaeum koreensis" MY1. J. Bacteriol. 2011, 193:5539-5540.
    • (2011) J. Bacteriol. , vol.193 , pp. 5539-5540
    • Kim, B.K.1    Jung, M.Y.2    Yu, D.S.3    Park, S.J.4    Oh, T.K.5    Rhee, S.K.6    Kim, J.F.7
  • 44
    • 0030050611 scopus 로고    scopus 로고
    • Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima
    • Kletzin A., Adams M.W. Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima. J. Bacteriol. 1996, 178:248-257.
    • (1996) J. Bacteriol. , vol.178 , pp. 248-257
    • Kletzin, A.1    Adams, M.W.2
  • 46
    • 36849026782 scopus 로고    scopus 로고
    • Microbial silicification in sinters from two terrestrial hot springs in the Uzon Caldera, Kamchatka, Russia
    • Kyle J., Schroeder P., Wiegel J. Microbial silicification in sinters from two terrestrial hot springs in the Uzon Caldera, Kamchatka, Russia. Geomicrobiol. J. 2007, 24:627-641.
    • (2007) Geomicrobiol. J. , vol.24 , pp. 627-641
    • Kyle, J.1    Schroeder, P.2    Wiegel, J.3
  • 47
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N., Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 2004, 21:1095-1109.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 48
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N., Lepage T., Blanquart S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 49
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le S.Q., Gascuel O. An improved general amino acid replacement matrix. Mol. Biol. Evol. 2008, 25:1307-1320.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 52
    • 17644441088 scopus 로고    scopus 로고
    • Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers
    • Lopez-Garcia P., Brochier C., Moreira D., Rodriguez-Valera F. Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers. Environ. Microbiol. 2004, 6:19-34.
    • (2004) Environ. Microbiol. , vol.6 , pp. 19-34
    • Lopez-Garcia, P.1    Brochier, C.2    Moreira, D.3    Rodriguez-Valera, F.4
  • 54
    • 0029846960 scopus 로고    scopus 로고
    • Characterization of a fourth type of 2-keto acid-oxidizing enzyme from a hyperthermophilic archaeon: 2-ketoglutarate ferredoxin oxidoreductase from Thermococcus litoralis
    • Mai X., Adams M.W. Characterization of a fourth type of 2-keto acid-oxidizing enzyme from a hyperthermophilic archaeon: 2-ketoglutarate ferredoxin oxidoreductase from Thermococcus litoralis. J. Bacteriol. 1996, 178:5890-5896.
    • (1996) J. Bacteriol. , vol.178 , pp. 5890-5896
    • Mai, X.1    Adams, M.W.2
  • 55
    • 25144488272 scopus 로고    scopus 로고
    • Evolutionary and functional genomics of the Archaea
    • Makarova K.S., Koonin E.V. Evolutionary and functional genomics of the Archaea. Curr. Opin. Microbiol. 2005, 8:586-594.
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 586-594
    • Makarova, K.S.1    Koonin, E.V.2
  • 56
    • 38949147846 scopus 로고    scopus 로고
    • Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
    • Makarova K.S., Sorokin A.V., Novichkov P.S., Wolf Y.I., Koonin E.V. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea. Biol. Direct 2007, 2:33.
    • (2007) Biol. Direct , vol.2 , pp. 33
    • Makarova, K.S.1    Sorokin, A.V.2    Novichkov, P.S.3    Wolf, Y.I.4    Koonin, E.V.5
  • 57
    • 84861212981 scopus 로고    scopus 로고
    • Genome sequence of " Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary
    • Mosier A.C., Allen E.E., Kim M., Ferriera S., Francis C.A. Genome sequence of " Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary. J. Bacteriol. 2012, 194:2119-2120.
    • (2012) J. Bacteriol. , vol.194 , pp. 2119-2120
    • Mosier, A.C.1    Allen, E.E.2    Kim, M.3    Ferriera, S.4    Francis, C.A.5
  • 58
    • 84861220096 scopus 로고    scopus 로고
    • Genome sequence of " Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary
    • Mosier A.C., Allen E.E., Kim M., Ferriera S., Francis C.A. Genome sequence of " Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary. J. Bacteriol. 2012, 194:2121-2122.
    • (2012) J. Bacteriol. , vol.194 , pp. 2121-2122
    • Mosier, A.C.1    Allen, E.E.2    Kim, M.3    Ferriera, S.4    Francis, C.A.5
  • 59
    • 84867688970 scopus 로고    scopus 로고
    • Ecophysiology of an ammonia-oxidizing archaeon adapted to low-salinity habitats
    • Mosier A.C., Lund M.B., Francis C.A. Ecophysiology of an ammonia-oxidizing archaeon adapted to low-salinity habitats. Microb. Ecol. 2012, 64:955-963.
    • (2012) Microb. Ecol. , vol.64 , pp. 955-963
    • Mosier, A.C.1    Lund, M.B.2    Francis, C.A.3
  • 60
    • 0031847928 scopus 로고    scopus 로고
    • Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount
    • Moyer C., Tiedje J., Dobbs F., Karl D. Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount. Hawaii Deep Sea Res. Part II 1998, 45:303-317.
    • (1998) Hawaii Deep Sea Res. Part II , vol.45 , pp. 303-317
    • Moyer, C.1    Tiedje, J.2    Dobbs, F.3    Karl, D.4
  • 61
    • 79955598535 scopus 로고    scopus 로고
    • Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
    • Nunoura T., Takaki Y., Kakuta J., Nishi S., Sugahara J., Kazama H., Chee G.J., Hattori M., et al. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res. 2011, 39:3204-3223.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 3204-3223
    • Nunoura, T.1    Takaki, Y.2    Kakuta, J.3    Nishi, S.4    Sugahara, J.5    Kazama, H.6    Chee, G.J.7    Hattori, M.8
  • 62
    • 79959289950 scopus 로고    scopus 로고
    • The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology
    • Pester M., Schleper C., Wagner M. The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Curr. Opin. Microbiol. 2011, 14:300-306.
    • (2011) Curr. Opin. Microbiol. , vol.14 , pp. 300-306
    • Pester, M.1    Schleper, C.2    Wagner, M.3
  • 63
    • 0027494836 scopus 로고
    • MUST, a computer package of management utilities for sequences and trees
    • Philippe H. MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res. 1993, 21:5264-5272.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5264-5272
    • Philippe, H.1
  • 64
    • 34547751897 scopus 로고    scopus 로고
    • Supertrees disentangle the chimerical origin of eukaryotic genomes
    • Pisani D., Cotton J.A., McInerney J.O. Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol. Biol. Evol. 2007, 24:1752-1760.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1752-1760
    • Pisani, D.1    Cotton, J.A.2    McInerney, J.O.3
  • 65
    • 15844365305 scopus 로고    scopus 로고
    • A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov
    • Preston C.M., Wu K.Y., Molinski T.F., DeLong E.F. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc. Natl. Acad. Sci. U S A 1996, 93:6241-6246.
    • (1996) Proc. Natl. Acad. Sci. U S A , vol.93 , pp. 6241-6246
    • Preston, C.M.1    Wu, K.Y.2    Molinski, T.F.3    DeLong, E.F.4
  • 66
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., Glockner F.O. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007, 35:7188-7196.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 70
    • 77149156633 scopus 로고    scopus 로고
    • Diversity and abundance of Korarchaeota in terrestrial hot springs of Iceland and Kamchatka
    • Reigstad L.J., Jorgensen S.L., Schleper C. Diversity and abundance of Korarchaeota in terrestrial hot springs of Iceland and Kamchatka. ISME J. 2010, 4:346-356.
    • (2010) ISME J. , vol.4 , pp. 346-356
    • Reigstad, L.J.1    Jorgensen, S.L.2    Schleper, C.3
  • 71
    • 79955503452 scopus 로고    scopus 로고
    • Preparation of high-molecular weight DNA and metagenomic libraries from soils and hot springs
    • Reigstad L.J., Bartossek R., Schleper C. Preparation of high-molecular weight DNA and metagenomic libraries from soils and hot springs. Meth. Enzymol. 2011, 496:319-344.
    • (2011) Meth. Enzymol. , vol.496 , pp. 319-344
    • Reigstad, L.J.1    Bartossek, R.2    Schleper, C.3
  • 72
    • 0034013150 scopus 로고    scopus 로고
    • Microbial diversity at 83 degrees C in Calcite Springs, Yellowstone National Park: another environment where the Aquificales and " Korarchaeota" coexist
    • Reysenbach A.L., Ehringer M., Hershberger K. Microbial diversity at 83 degrees C in Calcite Springs, Yellowstone National Park: another environment where the Aquificales and " Korarchaeota" coexist. Extremophiles 2000, 4:61-67.
    • (2000) Extremophiles , vol.4 , pp. 61-67
    • Reysenbach, A.L.1    Ehringer, M.2    Hershberger, K.3
  • 73
    • 4544313053 scopus 로고    scopus 로고
    • The ring of life provides evidence for a genome fusion origin of eukaryotes
    • Rivera M.C., Lake J.A. The ring of life provides evidence for a genome fusion origin of eukaryotes. Nature 2004, 431:152-155.
    • (2004) Nature , vol.431 , pp. 152-155
    • Rivera, M.C.1    Lake, J.A.2
  • 76
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 77
    • 0030865449 scopus 로고    scopus 로고
    • Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum
    • Schleper C., Swanson R.V., Mathur E.J., DeLong E.F. Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 1997, 179:7803-7811.
    • (1997) J. Bacteriol. , vol.179 , pp. 7803-7811
    • Schleper, C.1    Swanson, R.V.2    Mathur, E.J.3    DeLong, E.F.4
  • 78
    • 0031680049 scopus 로고    scopus 로고
    • Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
    • Schleper C., DeLong E.F., Preston C.M., Feldman R.A., Wu K.Y., Swanson R.V. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 1998, 180:5003-5009.
    • (1998) J. Bacteriol. , vol.180 , pp. 5003-5009
    • Schleper, C.1    DeLong, E.F.2    Preston, C.M.3    Feldman, R.A.4    Wu, K.Y.5    Swanson, R.V.6
  • 82
    • 84870486180 scopus 로고    scopus 로고
    • The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
    • Spang A., Poehlein A., Offre P., Zumbragel S., Haider S., Rychlik N., Nowka B., Schmeisser C., et al. The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environ. Microbiol. 2012, 10.1111/j.1462-2920.2012.02893.x.
    • (2012) Environ. Microbiol.
    • Spang, A.1    Poehlein, A.2    Offre, P.3    Zumbragel, S.4    Haider, S.5    Rychlik, N.6    Nowka, B.7    Schmeisser, C.8
  • 84
    • 0030323823 scopus 로고    scopus 로고
    • Hyperthermophiles in the history of life
    • Stetter K.O. Hyperthermophiles in the history of life. Ciba Found. Symp. 1996, 202:1-10.
    • (1996) Ciba Found. Symp. , vol.202 , pp. 1-10
    • Stetter, K.O.1
  • 85
    • 0033042910 scopus 로고    scopus 로고
    • A molecular view of archaeal diversity in marine and terrestrial hot water environments
    • Takai K., Sako Y. A molecular view of archaeal diversity in marine and terrestrial hot water environments. FEMS Microbiol. Ecol. 1999, 28:177-188.
    • (1999) FEMS Microbiol. Ecol. , vol.28 , pp. 177-188
    • Takai, K.1    Sako, Y.2
  • 87
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov R.L., Koonin E.V., Lipman D.J. A genomic perspective on protein families. Science 1997, 278:631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 90
    • 0030937675 scopus 로고    scopus 로고
    • Structures and functions of four anabolic 2-oxoacid oxidoreductases in Methanobacterium thermoautotrophicum
    • Tersteegen A., Linder D., Thauer R.K., Hedderich R. Structures and functions of four anabolic 2-oxoacid oxidoreductases in Methanobacterium thermoautotrophicum. Eur. J. Biochem. 1997, 244:862-868.
    • (1997) Eur. J. Biochem. , vol.244 , pp. 862-868
    • Tersteegen, A.1    Linder, D.2    Thauer, R.K.3    Hedderich, R.4
  • 91
    • 84862562185 scopus 로고    scopus 로고
    • An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin
    • Thiergart T., Landan G., Schenk M., Dagan T., Martin W.F. An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol. Evol. 2012, 4:466-485.
    • (2012) Genome Biol. Evol. , vol.4 , pp. 466-485
    • Thiergart, T.1    Landan, G.2    Schenk, M.3    Dagan, T.4    Martin, W.F.5
  • 94
    • 0015239525 scopus 로고
    • Pyruvate-ferredoxin oxidoreductase. 3. Purification and properties of the enzyme
    • Uyeda K., Rabinowitz J.C. Pyruvate-ferredoxin oxidoreductase. 3. Purification and properties of the enzyme. J. Biol. Chem. 1971, 246:3111-3119.
    • (1971) J. Biol. Chem. , vol.246 , pp. 3111-3119
    • Uyeda, K.1    Rabinowitz, J.C.2
  • 98
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese C.R., Kandler O., Wheelis M.L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U S A 1990, 87:4576-4579.
    • (1990) Proc. Natl. Acad. Sci. U S A , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 99
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R. Bacterial evolution. Microbiol. Rev. 1987, 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 101
    • 0029784085 scopus 로고    scopus 로고
    • 2-oxoacid:ferredoxin oxidoreductase from the thermoacidophilic archaeon, Sulfolobus sp. strain 7
    • Zhang Q., Iwasaki T., Wakagi T., Oshima T. 2-oxoacid:ferredoxin oxidoreductase from the thermoacidophilic archaeon, Sulfolobus sp. strain 7. J. Biochem. 1996, 120:587-599.
    • (1996) J. Biochem. , vol.120 , pp. 587-599
    • Zhang, Q.1    Iwasaki, T.2    Wakagi, T.3    Oshima, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.