-
1
-
-
78349282589
-
Ammonia-oxidising archaea-physiology, ecology and evolution
-
Schleper C, Nicol G (2010) Ammonia-oxidising archaea-physiology, ecology and evolution. Adv Microb Physiol 57: 1-41.
-
(2010)
Adv Microb Physiol
, vol.57
, pp. 1-41
-
-
Schleper, C.1
Nicol, G.2
-
2
-
-
68149112220
-
Environmental factors shaping the ecological niches of ammonia-oxidizing archaea
-
doi:10.1111/j.1574-6976.2009.00179.x
-
Erguder TH, Boon N, Wittebolle L, Marzorati M, Verstraete W (2009) Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol Rev 33: 855-869. doi: 10. 1111/j. 1574-6976. 2009. 00179. x.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 855-869
-
-
Erguder, T.H.1
Boon, N.2
Wittebolle, L.3
Marzorati, M.4
Verstraete, W.5
-
3
-
-
77956095401
-
Ammonia oxidation: different niches for bacteria and archaea?
-
doi:10.1038/ismej.2010.111
-
Schleper C (2010) Ammonia oxidation: different niches for bacteria and archaea? ISME J 4: 1092-1094. doi: 10. 1038/ismej. 2010. 111.
-
(2010)
ISME J
, vol.4
, pp. 1092-1094
-
-
Schleper, C.1
-
4
-
-
70350052417
-
Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria
-
doi:10.1038/nature08465
-
Martens-Habbena W, Berube PM, Urakawa H, La Torre De JR, Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria. Nature 461: 976-979. doi: 10. 1038/nature08465.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
la Torre de, J.R.4
Stahl, D.A.5
-
5
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR (2011) Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6: e16626.
-
(2011)
PLoS One
, vol.6
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Francis, C.A.4
Quake, S.R.5
-
8
-
-
0026745071
-
Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes
-
Amann RI, Zarda B, Stahl DA, Schleifer KH (1992) Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 58: 3007-3011.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 3007-3011
-
-
Amann, R.I.1
Zarda, B.2
Stahl, D.A.3
Schleifer, K.H.4
-
9
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
-
Daims H, Brühl A, Amann R, Schleifer KH, Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
10
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
doi:10.1126/science.1157890
-
Hunt DE et al (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085. doi: 10. 1126/science. 1157890.
-
(2008)
Science
, vol.320
, pp. 1081-1085
-
-
Hunt, D.E.1
-
11
-
-
52949134066
-
Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary
-
doi:10.1111/j.1462-2920.2008.01764.x
-
Mosier A, Francis C (2008) Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ Microbiol 10: 3002-3016. doi: 10. 1111/j. 1462-2920. 2008. 01764. x.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3002-3016
-
-
Mosier, A.1
Francis, C.2
-
12
-
-
33947215475
-
CAMERA: a community resource for metagenomics
-
doi:10.1371/journal.pbio.0050075
-
Seshadri R, Kravitz SA, Smarr L, Gilna P, Frazier M (2007) CAMERA: a community resource for metagenomics. PLoS Biol 5: e75. doi: 10. 1371/journal. pbio. 0050075.
-
(2007)
PLoS Biol
, vol.5
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
14
-
-
80054738892
-
Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation
-
doi:10.1038/ismej.2011.58
-
Santoro AE, Casciotti KL (2011) Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation. ISME J 5: 1796-1808. doi: 10. 1038/ismej. 2011. 58.
-
(2011)
ISME J
, vol.5
, pp. 1796-1808
-
-
Santoro, A.E.1
Casciotti, K.L.2
-
15
-
-
38549131184
-
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
-
doi:10.1111/j.1462-2920.2007.01506.x
-
de la Torre J, Walker C, Ingalls A, Könneke M, Stahl D (2008) Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol 10: 810-818. doi: 10. 1111/j. 1462-2920. 2007. 01506. x.
-
(2008)
Environ Microbiol
, vol.10
, pp. 810-818
-
-
de la Torre, J.1
Walker, C.2
Ingalls, A.3
Könneke, M.4
Stahl, D.5
-
16
-
-
78649703098
-
Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria
-
doi:10.1128/AEM.01478-10
-
Park B-J et al (2010) Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria. Appl Environ Microbiol 76: 7575-7587. doi: 10. 1128/AEM. 01478-10.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7575-7587
-
-
Park, B.-J.1
-
17
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
doi:10.1073/pnas.1013488108
-
Tourna M et al (2011) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci 108: 8420-8425. doi: 10. 1073/pnas. 1013488108.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
-
18
-
-
84858017989
-
Production of oceanic nitrous oxide by ammonia-oxidizing archaea
-
doi:10.5194/bgd-9-2095-2012
-
Loescher CR et al (2012) Production of oceanic nitrous oxide by ammonia-oxidizing archaea. Biogeosci Discuss 9: 2095-2122. doi: 10. 5194/bgd-9-2095-2012.
-
(2012)
Biogeosci Discuss
, vol.9
, pp. 2095-2122
-
-
Loescher, C.R.1
-
19
-
-
41149153310
-
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring
-
doi:10.1073/pnas.0708857105
-
Hatzenpichler R et al (2008) A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc Natl Acad Sci 105: 2134-2139. doi: 10. 1073/pnas. 0708857105.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 2134-2139
-
-
Hatzenpichler, R.1
-
20
-
-
78049432317
-
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current
-
doi:10.1111/j.1462-2920.2010.02205.x
-
Santoro AE, Casciotti KL, Francis CA (2010) Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current. Environ Microbiol 12: 1989-2006. doi: 10. 1111/j. 1462-2920. 2010. 02205. x.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1989-2006
-
-
Santoro, A.E.1
Casciotti, K.L.2
Francis, C.A.3
-
21
-
-
0015802489
-
Specific inhibitors of ammonia oxidation in Nitrosomonas
-
Hooper AB, Terry KR (1973) Specific inhibitors of ammonia oxidation in Nitrosomonas. J Bacteriol 115: 480-485.
-
(1973)
J Bacteriol
, vol.115
, pp. 480-485
-
-
Hooper, A.B.1
Terry, K.R.2
-
22
-
-
0031747417
-
Estimation of nitrifying bacterial activities by measuring oxygen uptake in the presence of the metabolic inhibitors allylthiourea and azide
-
Ginestet P, Audic J, Urbain V, Block J (1998) Estimation of nitrifying bacterial activities by measuring oxygen uptake in the presence of the metabolic inhibitors allylthiourea and azide. Appl Environ Microbiol 64: 2266-2268.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2266-2268
-
-
Ginestet, P.1
Audic, J.2
Urbain, V.3
Block, J.4
-
23
-
-
70349694213
-
2O): the dominant ozone-depleting substance emitted in the 21st century
-
doi:10.1126/science.1176985
-
2O): the dominant ozone-depleting substance emitted in the 21st century. Science 326: 123-125. doi: 10. 1126/science. 1176985.
-
(2009)
Science
, vol.326
, pp. 123-125
-
-
Ravishankara, A.R.1
Daniel, J.S.2
Portmann, R.W.3
-
24
-
-
77949387838
-
2O
-
doi:10.1126/science.1184945
-
2O. Science 327: 1339-1340. doi: 10. 1126/science. 1184945.
-
(2010)
Science
, vol.327
, pp. 1339-1340
-
-
Codispoti, L.A.1
-
25
-
-
79960898142
-
2O-producing microbial communities in soils-what matters for their functioning?
-
doi:10.1016/B978-0-12-387046-9.00002-5
-
2O-producing microbial communities in soils-what matters for their functioning? Adv Appl Microbiol 75: 33-70. doi: 10. 1016/B978-0-12-387046-9. 00002-5.
-
(2011)
Adv Appl Microbiol
, vol.75
, pp. 33-70
-
-
Braker, G.1
Conrad, R.2
-
26
-
-
0345863540
-
Metabolism of inorganic N compounds by ammonia-oxidizing bacteria
-
doi:10.1080/10409230390267446
-
Arp DJ, Stein LY (2003) Metabolism of inorganic N compounds by ammonia-oxidizing bacteria. Crit Rev Biochem Mol Biol 38: 471-495. doi: 10. 1080/10409230390267446.
-
(2003)
Crit Rev Biochem Mol Biol
, vol.38
, pp. 471-495
-
-
Arp, D.J.1
Stein, L.Y.2
-
27
-
-
33846987885
-
Molecular diversity of nitrite reductase genes (nirK) in nitrifying bacteria
-
Cantera J, Stein L (2007) Molecular diversity of nitrite reductase genes (nirK) in nitrifying bacteria. Environ Microbiol 9: 765-776.
-
(2007)
Environ Microbiol
, vol.9
, pp. 765-776
-
-
Cantera, J.1
Stein, L.2
-
28
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch A et al (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1985-1995
-
-
Treusch, A.1
-
29
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
-
doi:10.1371/journal.pbio.0050016
-
Yooseph S et al (2007) The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 5: e16. doi: 10. 1371/journal. pbio. 0050016.
-
(2007)
PLoS Biol
, vol.5
-
-
Yooseph, S.1
-
30
-
-
77954639120
-
Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context
-
doi:10.1111/j.1462-2920.2010.02153.x
-
Bartossek R, Nicol GW, Lanzen A, Klenk H-P, Schleper C (2010) Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context. Environ Microbiol 12: 1075-1088. doi: 10. 1111/j. 1462-2920. 2010. 02153. x.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1075-1088
-
-
Bartossek, R.1
Nicol, G.W.2
Lanzen, A.3
Klenk, H.-P.4
Schleper, C.5
-
31
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
doi:10.1073/pnas.0913533107
-
Walker CB et al (2010) Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci USA 107: 8818-8823. doi: 10. 1073/pnas. 0913533107.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
-
32
-
-
84867742480
-
Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea
-
doi: 10. 1038/ismej. 2012. 40
-
Lund, M. B., Smith, J. M., & Francis, C. A. (2012). Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea. The ISME Journal. doi: 10. 1038/ismej. 2012. 40.
-
(2012)
The ISME Journal
-
-
Lund, M.B.1
Smith, J.M.2
Francis, C.A.3
-
34
-
-
0034846841
-
Different sensitivities to oxygen of nitrous oxide production by Nitrosomonas europaea and Nitrosolobus multiformis
-
Dundee L, Hopkins D (2001) Different sensitivities to oxygen of nitrous oxide production by Nitrosomonas europaea and Nitrosolobus multiformis. Soil Biol Biochem 33: 1563-1565.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 1563-1565
-
-
Dundee, L.1
Hopkins, D.2
-
35
-
-
34548665995
-
Role of nitrite reductase in the ammonia-oxidizing pathway of Nitrosomonas europaea
-
Cantera J, Stein L (2007) Role of nitrite reductase in the ammonia-oxidizing pathway of Nitrosomonas europaea. Arch Microbiol 188: 349-354.
-
(2007)
Arch Microbiol
, vol.188
, pp. 349-354
-
-
Cantera, J.1
Stein, L.2
-
36
-
-
79955061881
-
Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage
-
doi:10.1038/ismej.2010.172
-
Hollibaugh JT, Gifford S, Sharma S, Bano N, Moran MA (2011) Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage. ISME J 5: 866-878. doi: 10. 1038/ismej. 2010. 172.
-
(2011)
ISME J
, vol.5
, pp. 866-878
-
-
Hollibaugh, J.T.1
Gifford, S.2
Sharma, S.3
Bano, N.4
Moran, M.A.5
-
37
-
-
58149203231
-
InterPro: the integrative protein signature database
-
doi:10.1093/nar/gkn785
-
Hunter S et al (2009) InterPro: the integrative protein signature database. Nucleic Acids Res 37: D211-5. doi: 10. 1093/nar/gkn785.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
-
38
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke M et al (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
-
39
-
-
0027411096
-
Gene regulation by phosphate in enteric bacteria
-
doi:10.1002/jcb.240510110
-
Wanner BL (1993) Gene regulation by phosphate in enteric bacteria. J Cell Biochem 51: 47-54. doi: 10. 1002/jcb. 240510110.
-
(1993)
J Cell Biochem
, vol.51
, pp. 47-54
-
-
Wanner, B.L.1
-
40
-
-
20444450864
-
Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus
-
Oganesyan V et al (2005) Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus. J Bacteriol 187: 4238.
-
(2005)
J Bacteriol
, vol.187
, pp. 4238
-
-
Oganesyan, V.1
-
41
-
-
75149153513
-
The low-affinity phosphate transporter PitA is dispensable for in vitro growth of Mycobacterium smegmatis
-
doi:10.1186/1471-2180-9-254
-
Gebhard S, Ekanayaka N, Cook GM (2009) The low-affinity phosphate transporter PitA is dispensable for in vitro growth of Mycobacterium smegmatis. BMC Microbiol 9: 254. doi: 10. 1186/1471-2180-9-254.
-
(2009)
BMC Microbiol
, vol.9
, pp. 254
-
-
Gebhard, S.1
Ekanayaka, N.2
Cook, G.M.3
-
42
-
-
33746916802
-
Nitrogen sources and cycling in the San Francisco Bay estuary: a nitrate dual isotopic composition approach
-
Wankel S, Kendall C, Francis C, Paytan A (2006) Nitrogen sources and cycling in the San Francisco Bay estuary: a nitrate dual isotopic composition approach. Limnol Oceanogr 51: 1654-1664.
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 1654-1664
-
-
Wankel, S.1
Kendall, C.2
Francis, C.3
Paytan, A.4
-
43
-
-
0002578440
-
Interannual variability in dissolved inorganic nutrients in Northern San Francisco Bay estuary
-
Peterson D et al (1985) Interannual variability in dissolved inorganic nutrients in Northern San Francisco Bay estuary. Hydrobiologia 129: 37-58.
-
(1985)
Hydrobiologia
, vol.129
, pp. 37-58
-
-
Peterson, D.1
-
44
-
-
65049088132
-
Phytoplankton in the Upper San Francisco estuary: recent biomass trends, their causes and their trophic significance
-
Jassby A (2008) Phytoplankton in the Upper San Francisco estuary: recent biomass trends, their causes and their trophic significance. San Francisco Estuary Watershed Sci 6: 1-24.
-
(2008)
San Francisco Estuary Watershed Sci
, vol.6
, pp. 1-24
-
-
Jassby, A.1
-
45
-
-
0018419825
-
Methanogens: reevaluation of a unique biological group
-
Balch W, Fox G, Magrum L, Woese C, Wolfe R (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43: 260-296.
-
(1979)
Microbiol Rev
, vol.43
, pp. 260-296
-
-
Balch, W.1
Fox, G.2
Magrum, L.3
Woese, C.4
Wolfe, R.5
-
46
-
-
0017861955
-
Growth yields of green sulfur bacteria in mixed cultures with sulfur and sulfate reducing bacteria
-
Biebl H, Pfennig N (1978) Growth yields of green sulfur bacteria in mixed cultures with sulfur and sulfate reducing bacteria. Arch Microbiol 117: 9-16.
-
(1978)
Arch Microbiol
, vol.117
, pp. 9-16
-
-
Biebl, H.1
Pfennig, N.2
-
47
-
-
34247231614
-
Fluorescence in situ hybridization for the identification of environmental microbes
-
Pernthaler A, Pernthaler J (2007) Fluorescence in situ hybridization for the identification of environmental microbes. Methods Mol Biol 353: 153-164.
-
(2007)
Methods Mol Biol
, vol.353
, pp. 153-164
-
-
Pernthaler, A.1
Pernthaler, J.2
|