메뉴 건너뛰기




Volumn 28, Issue 2, 1999, Pages 177-188

A molecular view of archaeal diversity in marine and terrestrial hot water environments

Author keywords

Archaea; Biodiversity; Hydrothermal vent; Korarchaeota; Small subunit rDNA; Thermophile

Indexed keywords

RIBOSOME DNA; RIBOSOME RNA;

EID: 0033042910     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(98)00103-2     Document Type: Article
Times cited : (110)

References (38)
  • 1
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellow-stone National Park hot spring environment
    • Barns, S.M., Fundyga, R.E., Jeffries, M.W. and Pace, N.R. (1994) Remarkable archaeal diversity detected in a Yellow-stone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91, 1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 2
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S.M., Delwiche, C.F., Palmer, J.D. and Pace, N.R. (1996) Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93, 9188-9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 4
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E.F. (1992) Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89, 5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 5
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E.F., Wu, K.Y., Prezelin, B.B. and Jovine, R.V.M. (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371, 695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • DeLong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.M.4
  • 6
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J.A., McCallum, K. and Davis, A.A. (1992) Novel major archaebacterial group from marine plankton. Nature 356, 148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 8
    • 15844365305 scopus 로고    scopus 로고
    • A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.
    • Preston, C.M., Wu, K.Y., Molinski, T.F. and Delong, E.F. (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc. Natl. Acad. Sci. USA 93, 6241-6246.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6241-6246
    • Preston, C.M.1    Wu, K.Y.2    Molinski, T.F.3    Delong, E.F.4
  • 9
    • 0028308089 scopus 로고
    • Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
    • Reysenbach, A.-L., Wichham, G.S. and Pace, N.R. (1994) Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl. Environ. Microbiol. 60, 2113-2119.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2113-2119
    • Reysenbach, A.-L.1    Wichham, G.S.2    Pace, N.R.3
  • 10
    • 0031033384 scopus 로고    scopus 로고
    • Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
    • Schleper, C., Holben, W. and Klenk, H.-P. (1997) Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl. Environ. Microbiol. 63, 321-323.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 321-323
    • Schleper, C.1    Holben, W.2    Klenk, H.-P.3
  • 11
    • 0000500633 scopus 로고
    • Analysis of hydrothermal vent associated symbionts by ribosomal RNA sequences
    • Stahl, D.A., Lane, D.J., Olsen, G.J. and Pace, N.R. (1984) Analysis of hydrothermal vent associated symbionts by ribosomal RNA sequences. Science 244, 409-411.
    • (1984) Science , vol.244 , pp. 409-411
    • Stahl, D.A.1    Lane, D.J.2    Olsen, G.J.3    Pace, N.R.4
  • 13
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K.L. and Pace, N.R. (1998) Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180, 366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 15
    • 0030734675 scopus 로고    scopus 로고
    • Phylogenetic analysis of group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea
    • Mcinerney, J.O., Mullarkey, M., Wernecke, M.E. and Powell, R. (1997) Phylogenetic analysis of group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea. Proc. R. Soc. Lond. 264, 1663-1669.
    • (1997) Proc. R. Soc. Lond. , vol.264 , pp. 1663-1669
    • Mcinerney, J.O.1    Mullarkey, M.2    Wernecke, M.E.3    Powell, R.4
  • 16
    • 0030831861 scopus 로고    scopus 로고
    • Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh
    • Munson, M.A., Nedwell, D.B. and Embley, T.M. (1997) Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh. Appl. Environ. Microbiol. 63, 4729-4733.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4729-4733
    • Munson, M.A.1    Nedwell, D.B.2    Embley, T.M.3
  • 17
    • 0032054378 scopus 로고    scopus 로고
    • Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments
    • Vetriani, C., Reysenbach, A.-L. and Dore, J. (1998) Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments. FEMS Microbiol. Lett. 161, 83-88.
    • (1998) FEMS Microbiol. Lett. , vol.161 , pp. 83-88
    • Vetriani, C.1    Reysenbach, A.-L.2    Dore, J.3
  • 18
    • 0027487614 scopus 로고
    • Enzymes and proteins from organisms that grow near and above 100°C
    • Adams, M.W.W. (1993) Enzymes and proteins from organisms that grow near and above 100°C. Annu. Rev. Microbiol. 47, 627-658.
    • (1993) Annu. Rev. Microbiol. , vol.47 , pp. 627-658
    • Adams, M.W.W.1
  • 19
    • 0029055215 scopus 로고
    • Extremozyme: Expanding the limits of biocatalysis
    • Adams, M.W.W., Perler, F.B. and Kelly, R.M. (1995) Extremozyme: expanding the limits of biocatalysis. Bio/technology 13, 662-668.
    • (1995) Bio/technology , vol.13 , pp. 662-668
    • Adams, M.W.W.1    Perler, F.B.2    Kelly, R.M.3
  • 20
    • 0029798568 scopus 로고    scopus 로고
    • Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacterium
    • Sako, Y., Takai, K., Uchida, A., Ishida, Y. and Katayama, Y. (1996) Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacterium. Int. J. Syst. Bacteriol. 46, 1099-1104.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 1099-1104
    • Sako, Y.1    Takai, K.2    Uchida, A.3    Ishida, Y.4    Katayama, Y.5
  • 21
    • 0029826916 scopus 로고    scopus 로고
    • Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100°C
    • Sako, Y., Nomura, N., Uchida, A., Ishida, Y., Morii, H., Koga, Y., Hoaki, T. and Maruyama, T. (1996) Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100°C. Int. J. Syst. Bacteriol. 46, 1070-1077.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 1070-1077
    • Sako, Y.1    Nomura, N.2    Uchida, A.3    Ishida, Y.4    Morii, H.5    Koga, Y.6    Hoaki, T.7    Maruyama, T.8
  • 23
    • 0002346901 scopus 로고
    • Methenothermus sociabilis sp. nov., a second species within the Methanothermaceae growing at 97°C
    • Lauerer, G., Kristjansson, J.K., Langworthy, T.A., König, H. and Stetter, K.O. (1986) Methenothermus sociabilis sp. nov., a second species within the Methanothermaceae growing at 97°C. Syst. Appl. Microbiol. 8, 100-105.
    • (1986) Syst. Appl. Microbiol. , vol.8 , pp. 100-105
    • Lauerer, G.1    Kristjansson, J.K.2    Langworthy, T.A.3    König, H.4    Stetter, K.O.5
  • 24
    • 0031904685 scopus 로고    scopus 로고
    • Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants
    • Tanner, M.A., Grobel, B.M., Dojka, M.A. and Pace N.R. (1998) Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants. Appl. Environ. Microbiol. 64, 3110-3113.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3110-3113
    • Tanner, M.A.1    Grobel, B.M.2    Dojka, M.A.3    Pace, N.R.4
  • 25
    • 0001857117 scopus 로고
    • 16S/23S sequencing
    • Stackbrandt, E. and Good-fellow, M., Eds. John Wiley and Sons, New York, NY
    • Lane, D.J. (1985) 16S/23S sequencing. In: Nucleic Acid Techniques in Bacterial Systematics (Stackbrandt, E. and Good-fellow, M., Eds.), pp. 115-176. John Wiley and Sons, New York, NY.
    • (1985) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-176
    • Lane, D.J.1
  • 30
    • 0024236444 scopus 로고
    • Phylogenetic analysis using ribosomal RNA
    • Olsen, G.J. (1988) Phylogenetic analysis using ribosomal RNA. Methods Enzymol. 164, 793-812.
    • (1988) Methods Enzymol. , vol.164 , pp. 793-812
    • Olsen, G.J.1
  • 31
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence
    • Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J. Mol. Evol. 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 32
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from Atlantic and Pacific Oceans
    • Fuhrman, J.A., McCallum, K. and Davis, A.A. (1993) Phylogenetic diversity of subsurface marine microbial communities from Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59, 1294-1302.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 33
    • 0025952777 scopus 로고
    • Archaeal phylogeny: Reexamination of the phylogenetic position of Archaeglobus fulgidus in light of certain composition induced artifacts
    • Woese, C.R., Achenbach, L., Rouviere, P. and Mandelco, L. (1991) Archaeal phylogeny: reexamination of the phylogenetic position of Archaeglobus fulgidus in light of certain composition induced artifacts. Syst. Appl. Microbiol. 14, 364-371.
    • (1991) Syst. Appl. Microbiol. , vol.14 , pp. 364-371
    • Woese, C.R.1    Achenbach, L.2    Rouviere, P.3    Mandelco, L.4
  • 34
    • 0026050670 scopus 로고
    • A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics
    • Winker, S. and Woese, C.R. (1991) A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics. Syst. Appl. Microbiol. 14, 305-310.
    • (1991) Syst. Appl. Microbiol. , vol.14 , pp. 305-310
    • Winker, S.1    Woese, C.R.2
  • 37
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T.M., DeLong, E.F. and Pace, N.R. (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173, 4371-4378.
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 38
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic Marine archaeon
    • Stein, J.L., Marsh, T.L., Wu, K.Y., Shizuya, H. and DeLong, E.F. (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic Marine archaeon. J. Bacteriol. 178, 591-599.
    • (1996) J. Bacteriol. , vol.178 , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    DeLong, E.F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.