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Volumn 1830, Issue 8, 2013, Pages 4189-4201

Molecular basis of recognition of quadruplexes human telomere and c-myc promoter by the putative anticancer agent sanguinarine

Author keywords

Calorimetry; Fluorescence and CD spectroscopy; Human telomeric DNA; NHE III1 upstream of the P1 promoter of c myc; Sanguinarine; Telomerase repeat amplification protocol

Indexed keywords

ANTINEOPLASTIC AGENT; CELL EXTRACT; GUANINE QUADRUPLEX; MYC PROTEIN; SANGUINARINE; SANGUINARINE DERIVATIVE; TELOMERASE; UNCLASSIFIED DRUG;

EID: 84877862828     PISSN: 03044165     EISSN: 18728006     Source Type: Journal    
DOI: 10.1016/j.bbagen.2013.03.027     Document Type: Article
Times cited : (35)

References (110)
  • 1
    • 85047692457 scopus 로고    scopus 로고
    • The potential for gene repair via triple helix formation
    • DOI 10.1172/JCI200319552
    • M.M. Seidman, and P.M. Glazer The potential for gene repair via triple helix formation J. Clin. Invest. 112 2003 487 494 (Pubitemid 38056331)
    • (2003) Journal of Clinical Investigation , vol.112 , Issue.4 , pp. 487-494
    • Seidman, M.M.1    Glazer, P.M.2
  • 2
    • 0348010398 scopus 로고    scopus 로고
    • Caution! DNA Crossing: Crystal Structures of Holliday Junctions
    • DOI 10.1074/jbc.R300033200
    • F.A. Hays, J. Watson, and P.S. Ho Caution! DNA crossing: crystal structures of Holliday junctions J. Biol. Chem. 278 2003 49663 49666 (Pubitemid 37548795)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.50 , pp. 49663-49666
    • Hays, F.A.1    Watson, J.2    Ho, P.S.3
  • 3
    • 8444231721 scopus 로고    scopus 로고
    • Non-B DNA conformations, genomic rearrangements, and human disease
    • DOI 10.1074/jbc.R400028200
    • A. Bacolla, and R.D. Wells Non-B DNA conformations, genomic rearrangements, and human disease J. Biol. Chem. 279 2004 47411 47414 (Pubitemid 39540882)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.46 , pp. 47411-47414
    • Bacolla, A.1    Wells, R.D.2
  • 4
    • 0037705472 scopus 로고    scopus 로고
    • Unusual DNA duplex and hairpin motifs
    • DOI 10.1093/nar/gkg367
    • S.H. Chou, K.H. Chin, and A.H. Wang Unusual DNA duplex and hairpin motifs Nucleic Acids Res. 31 2003 2461 2474 (Pubitemid 37441730)
    • (2003) Nucleic Acids Research , vol.31 , Issue.10 , pp. 2461-2474
    • Chou, S.-H.1    Chin, K.-H.2    Wang, A.H.-J.3
  • 5
    • 0016207051 scopus 로고
    • Structures for polyinosinic acid and polyguanylic acid
    • S. Arnott, R. Chandrasekaran, and C.M. Marttila Structures for polyinosinic acid and polyguanylic acid Biochem. J. 141 1974 537 543
    • (1974) Biochem. J. , vol.141 , pp. 537-543
    • Arnott, S.1    Chandrasekaran, R.2    Marttila, C.M.3
  • 7
    • 0016610425 scopus 로고
    • X-ray fiber diffraction and model-building study of polyguanylic acid and polyinosinic acid
    • S.B. Zimmerman, G.H. Cohen, and D.R. Davies X-ray fiber diffraction and model-building study of polyguanylic acid and polyinosinic acid J. Mol. Biol. 92 1975 181 192
    • (1975) J. Mol. Biol. , vol.92 , pp. 181-192
    • Zimmerman, S.B.1    Cohen, G.H.2    Davies, D.R.3
  • 9
  • 14
    • 0037189914 scopus 로고    scopus 로고
    • Characterization and thermodynamic properties of quadruplex/duplex competition
    • DOI 10.1016/S0014-5793(02)03118-6, PII S0014579302031186
    • W. Li, P. Wu, T. Ohmichi, and N. Sugimoto Characterization and thermodynamic properties of quadruplex/duplex competition FEBS Lett. 526 2002 77 81 (Pubitemid 35245696)
    • (2002) FEBS Letters , vol.526 , Issue.1-3 , pp. 77-81
    • Li, W.1    Wu, P.2    Ohmichi, T.3    Sugimoto, N.4
  • 15
    • 0028850113 scopus 로고
    • 1H NMR spectroscopy of DNA triplexes and quadruplexes
    • J. Feigon, K.M. Koshlap, and F.W. Smith 1H NMR spectroscopy of DNA triplexes and quadruplexes Methods Enzymol. 261 1995 225 255
    • (1995) Methods Enzymol. , vol.261 , pp. 225-255
    • Feigon, J.1    Koshlap, K.M.2    Smith, F.W.3
  • 16
    • 0036700531 scopus 로고    scopus 로고
    • 13C-labeled nucleotides for resonance assignments in nucleic acids
    • DOI 10.1023/A:1020277223482
    • 13C-labeled nucleotides for resonance assignments in nucleic acids J. Biomol. NMR 23 2002 257 262 (Pubitemid 35174614)
    • (2002) Journal of Biomolecular NMR , vol.23 , Issue.4 , pp. 257-262
    • Phan, A.T.1    Patel, D.J.2
  • 17
    • 40249084264 scopus 로고    scopus 로고
    • Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes
    • DOI 10.1093/nar/gkm1138
    • J. Eddy, and N. Maizels Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes Nucleic Acids Res. 36 2008 1321 1333 (Pubitemid 351330947)
    • (2008) Nucleic Acids Research , vol.36 , Issue.4 , pp. 1321-1333
    • Eddy, J.1    Maizels, N.2
  • 18
    • 0023663911 scopus 로고
    • Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs
    • E. Henderson, C.C. Hardin, S.K. Walk, I. Tinoco Jr., and E.H. Blackburn Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs Cell 51 1987 899 908
    • (1987) Cell , vol.51 , pp. 899-908
    • Henderson, E.1    Hardin, C.C.2    Walk, S.K.3    Tinoco, Jr.I.4    Blackburn, E.H.5
  • 19
    • 33846928449 scopus 로고    scopus 로고
    • G-quadruplexes in promoters throughout the human genome
    • DOI 10.1093/nar/gkl1057
    • J.L. Huppert, and S. Balasubramanian G-quadruplexes in promoters throughout the human genome Nucleic Acids Res. 35 2007 406 413 (Pubitemid 46232058)
    • (2007) Nucleic Acids Research , vol.35 , Issue.2 , pp. 406-413
    • Huppert, J.L.1    Balasubramanian, S.2
  • 20
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • DOI 10.1093/nar/gki553
    • A.K. Todd, M. Johnston, and S. Neidle Highly prevalent putative quadruplex sequence motifs in human DNA Nucleic Acids Res. 33 2005 2901 2907 (Pubitemid 41511229)
    • (2005) Nucleic Acids Research , vol.33 , Issue.9 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 22
    • 52449093394 scopus 로고    scopus 로고
    • Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species
    • A. Verma, K. Halder, R. Halder, V.K. Yadav, P. Rawal, R.K. Thakur, F. Mohd, A. Sharma, and S. Chowdhury Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species J. Med. Chem. 51 2008 5641 5649
    • (2008) J. Med. Chem. , vol.51 , pp. 5641-5649
    • Verma, A.1    Halder, K.2    Halder, R.3    Yadav, V.K.4    Rawal, P.5    Thakur, R.K.6    Mohd, F.7    Sharma, A.8    Chowdhury, S.9
  • 23
    • 38549092075 scopus 로고    scopus 로고
    • QuadBase: Genome-wide database of G4 DNA - Occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
    • V.K. Yadav, J.K. Abraham, P. Mani, R. Kulshrestha, and S. Chowdhury QuadBase: genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes Nucleic Acids Res. 36 2008 D381 D385
    • (2008) Nucleic Acids Res. , vol.36
    • Yadav, V.K.1    Abraham, J.K.2    Mani, P.3    Kulshrestha, R.4    Chowdhury, S.5
  • 24
    • 58549096734 scopus 로고    scopus 로고
    • Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression
    • R.K. Thakur, P. Kumar, K. Halder, A. Verma, A. Kar, J.-L. Parent, R. Basundra, A. Kumar, and S. Chowdhury Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression Nucleic Acids Res. 37 2009 172 183
    • (2009) Nucleic Acids Res. , vol.37 , pp. 172-183
    • Thakur, R.K.1    Kumar, P.2    Halder, K.3    Verma, A.4    Kar, A.5    Parent, J.-L.6    Basundra, R.7    Kumar, A.8    Chowdhury, S.9
  • 25
    • 34347273762 scopus 로고    scopus 로고
    • Tetraplex DNA and its interacting proteins
    • M. Fry Tetraplex DNA and its interacting proteins Front. Biosci. 12 2007 4336 4351
    • (2007) Front. Biosci. , vol.12 , pp. 4336-4351
    • Fry, M.1
  • 26
    • 33845352895 scopus 로고    scopus 로고
    • Dynamic roles for G4 DNA in the biology of eukaryotic cells
    • DOI 10.1038/nsmb1171, PII NSMB1171
    • N. Maizels Dynamic roles for G4 DNA in the biology of eukaryotic cells Nat. Struct. Mol. Biol. 13 2006 1055 1059 (Pubitemid 44885914)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.12 , pp. 1055-1059
    • Maizels, N.1
  • 28
    • 0026772525 scopus 로고
    • MyoD binds to the guanine tetrad nucleic acid structure
    • K. Walsh, and A. Gualberto MyoD binds to the guanine tetrad nucleic acid structure J. Biol. Chem. 267 1992 13714 13718
    • (1992) J. Biol. Chem. , vol.267 , pp. 13714-13718
    • Walsh, K.1    Gualberto, A.2
  • 29
    • 0036519363 scopus 로고    scopus 로고
    • DNA and its associated processes as targets for cancer therapy
    • L.H. Hurley DNA and its associated processes as targets for cancer therapy Nat. Rev. Cancer 2 2002 188 200 (Pubitemid 37328788)
    • (2002) Nature Reviews Cancer , vol.2 , Issue.3 , pp. 188-200
    • Hurley, L.H.1
  • 30
    • 0036562687 scopus 로고    scopus 로고
    • Telomere maintenance as a target for anticancer drug discovery
    • S. Neidle, and G. Parkinson Telomere maintenance as a target for anticancer drug discovery Nat. Rev. Drug Discov. 1 2002 383 393 (Pubitemid 37361468)
    • (2002) Nature Reviews Drug Discovery , vol.1 , Issue.5 , pp. 383-393
    • Neidle, S.1    Parkinson, G.2
  • 31
    • 4444304085 scopus 로고    scopus 로고
    • G-quadruplex interacting agents targeting the telomeric G-overhang are more than simple telomerase inhibitors
    • J.F. Riou G-quadruplex interacting agents targeting the telomeric G-overhang are more than simple telomerase inhibitors Curr. Med. Chem. Anticancer Agents 4 2004 439 443
    • (2004) Curr. Med. Chem. Anticancer Agents , vol.4 , pp. 439-443
    • Riou, J.F.1
  • 32
    • 0034722885 scopus 로고    scopus 로고
    • Telomere maintenance mechanisms as a target for drug development
    • DOI 10.1038/sj.onc.1204092
    • D.J. Bearss, L.H. Hurley, and D.D. Von Hoff Telomere maintenance mechanisms as a target for drug development Oncogene 19 2000 6632 6641 (Pubitemid 32197702)
    • (2000) Oncogene , vol.19 , Issue.56 , pp. 6632-6641
    • Bearss, D.J.1    Hurley, L.H.2    Von Hoff, D.D.3
  • 33
    • 47849105417 scopus 로고    scopus 로고
    • Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions
    • Y. Qin, and L.H. Hurley Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions Biochimie 90 2008 1149 1171
    • (2008) Biochimie , vol.90 , pp. 1149-1171
    • Qin, Y.1    Hurley, L.H.2
  • 34
    • 70549099970 scopus 로고    scopus 로고
    • The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics
    • T.A. Brooks, and L.H. Hurley The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics Nat. Rev. Cancer 9 2009 849 861
    • (2009) Nat. Rev. Cancer , vol.9 , pp. 849-861
    • Brooks, T.A.1    Hurley, L.H.2
  • 37
    • 0032030327 scopus 로고    scopus 로고
    • DNA tetraplex formation in the control region of c-myc
    • DOI 10.1093/nar/26.5.1167
    • T. Simonsson, P. Pecinka, and M. Kubista DNA tetraplex formation in the control region of c-myc Nucleic Acids Res. 26 1998 1167 1172 (Pubitemid 28291685)
    • (1998) Nucleic Acids Research , vol.26 , Issue.5 , pp. 1167-1172
    • Simonsson, T.1    Pecinka, P.2    Kubista, M.3
  • 39
    • 0035200324 scopus 로고    scopus 로고
    • Transcriptional consequences of topoisomerase inhibition
    • DOI 10.1128/MCB.21.24.8437-8451.2001
    • I. Collins, A. Weber, and D. Levens Transcriptional consequences of topoisomerase inhibition Mol. Cell. Biol. 21 2001 8437 8451 (Pubitemid 33108603)
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.24 , pp. 8437-8451
    • Collins, I.1    Weber, A.2    Levens, D.3
  • 40
    • 0032719066 scopus 로고    scopus 로고
    • Porphyrins can catalyze the interconversion of DNA quadruplex structural types
    • H. Arthanari, and P.H. Bolton Porphyrins can catalyze the interconversion of DNA quadruplex structural types Anticancer Drug Des. 14 1999 317 326
    • (1999) Anticancer Drug Des. , vol.14 , pp. 317-326
    • Arthanari, H.1    Bolton, P.H.2
  • 44
  • 47
    • 84860143903 scopus 로고    scopus 로고
    • G-quadruplex binding ligands: From naturally occurring to rationally designed molecules
    • T. Vy, Thi Le, S. Han, J. Chae, and H.J. Park G-quadruplex binding ligands: from naturally occurring to rationally designed molecules Curr. Pharm. Des. 18 2012 1948 1972
    • (2012) Curr. Pharm. Des. , vol.18 , pp. 1948-1972
    • Vy, T.1    Le, T.2    Han, S.3    Chae, J.4    Park, H.J.5
  • 48
    • 77951978938 scopus 로고    scopus 로고
    • Spectroscopic study on the binding of porphyrins to (G(4)T(4)G(4))4 parallel G-quadruplex
    • C. Wei, J. Wang, and M. Zhang Spectroscopic study on the binding of porphyrins to (G(4)T(4)G(4))4 parallel G-quadruplex Biophys. Chem. 148 2010 51 55
    • (2010) Biophys. Chem. , vol.148 , pp. 51-55
    • Wei, C.1    Wang, J.2    Zhang, M.3
  • 51
    • 78649813085 scopus 로고    scopus 로고
    • Mechanism of interaction of small transcription inhibitors with DNA in the context of chromatin and telomere
    • S. Ghosh, P. Majumder, S.K. Pradhan, and D. Dasgupta Mechanism of interaction of small transcription inhibitors with DNA in the context of chromatin and telomere Biochim. Biophys. Acta 1799 2010 795 809
    • (2010) Biochim. Biophys. Acta , vol.1799 , pp. 795-809
    • Ghosh, S.1    Majumder, P.2    Pradhan, S.K.3    Dasgupta, D.4
  • 52
    • 84862587840 scopus 로고    scopus 로고
    • Spectroscopic, molecular modeling, and NMR-spectroscopic investigation of the binding mode of the natural alkaloids berberine and sanguinarine to human telomeric G-quadruplex DNA
    • I. Bessi, C. Bazzicalupi, C. Richter, H.R. Jonker, K. Saxena, C. Sissi, M. Chioccioli, S. Bianco, A.R. Bilia, H. Schwalbe, and P. Gratteri Spectroscopic, molecular modeling, and NMR-spectroscopic investigation of the binding mode of the natural alkaloids berberine and sanguinarine to human telomeric G-quadruplex DNA ACS Chem. Biol. 7 2012 1109 1119
    • (2012) ACS Chem. Biol. , vol.7 , pp. 1109-1119
    • Bessi, I.1    Bazzicalupi, C.2    Richter, C.3    Jonker, H.R.4    Saxena, K.5    Sissi, C.6    Chioccioli, M.7    Bianco, S.8    Bilia, A.R.9    Schwalbe, H.10    Gratteri, P.11
  • 53
    • 79953191076 scopus 로고    scopus 로고
    • Quinolino-benzo-[5, 6]-dihydroisoquindolium compounds derived from berberine: A new class of highly selective ligands for G-quadruplex DNA in c-myc oncogene
    • Y. Ma, T.M. Ou, J.H. Tan, J.Q. Hou, S.L. Huang, L.Q. Gu, and Z.S. Huang Quinolino-benzo-[5, 6]-dihydroisoquindolium compounds derived from berberine: a new class of highly selective ligands for G-quadruplex DNA in c-myc oncogene Eur. J. Med. Chem. 46 2011 1906 1913
    • (2011) Eur. J. Med. Chem. , vol.46 , pp. 1906-1913
    • Ma, Y.1    Ou, T.M.2    Tan, J.H.3    Hou, J.Q.4    Huang, S.L.5    Gu, L.Q.6    Huang, Z.S.7
  • 55
    • 66349113993 scopus 로고    scopus 로고
    • Synthesis and evaluation of 9-O-substituted berberine derivatives containing aza-aromatic terminal group as highly selective telomeric G-quadruplex stabilizing ligands
    • Y. Ma, T.-M. Ou, J.-H. Tan, J.-Q. Hou, S.-L. Huang, L.-Q. Gu, and Z.-S. Huang Synthesis and evaluation of 9-O-substituted berberine derivatives containing aza-aromatic terminal group as highly selective telomeric G-quadruplex stabilizing ligands Bioorg. Med. Chem. Lett. 19 2009 3414 3417
    • (2009) Bioorg. Med. Chem. Lett. , vol.19 , pp. 3414-3417
    • Ma, Y.1    Ou, T.-M.2    Tan, J.-H.3    Hou, J.-Q.4    Huang, S.-L.5    Gu, L.-Q.6    Huang, Z.-S.7
  • 56
    • 47249157340 scopus 로고    scopus 로고
    • Binding of berberine to human telomeric quadruplex - Spectroscopic, calorimetric and molecular modeling studies
    • DOI 10.1111/j.1742-4658.2008.06541.x
    • A. Arora, C. Balasubramanian, N. Kumar, S. Agrawal, R.P. Ojha, and S. Maiti Binding of berberine to human telomeric quadruplex - spectroscopic, calorimetric and molecular modeling studies FEBS J. 275 2008 3971 3983 (Pubitemid 351990958)
    • (2008) FEBS Journal , vol.275 , Issue.15 , pp. 3971-3983
    • Arora, A.1    Balasubramanian, C.2    Kumar, N.3    Agrawal, S.4    Ojha, R.P.5    Maiti, S.6
  • 58
    • 84870865073 scopus 로고    scopus 로고
    • Pt (II) squares as selective and effective human telomeric G-quadruplex binders and potential cancer therapeutics
    • M. Zong-Wan, X.H. Zheng, Y.F. Zhong, C. Tan, and L.N. Ji Pt (II) squares as selective and effective human telomeric G-quadruplex binders and potential cancer therapeutics Dalton Trans. 41 2012 11807 11812
    • (2012) Dalton Trans. , vol.41 , pp. 11807-11812
    • Zong-Wan, M.1    Zheng, X.H.2    Zhong, Y.F.3    Tan, C.4    Ji, L.N.5
  • 60
    • 79951716375 scopus 로고    scopus 로고
    • Interaction of berberine, palmatine, coralyne, and sanguinarine to quadruplex DNA: A comparative spectroscopic and calorimetric study
    • K. Bhadra, and G.S. Kumar Interaction of berberine, palmatine, coralyne, and sanguinarine to quadruplex DNA: a comparative spectroscopic and calorimetric study Biochim. Biophys. Acta 1810 2011 485 496
    • (2011) Biochim. Biophys. Acta , vol.1810 , pp. 485-496
    • Bhadra, K.1    Kumar, G.S.2
  • 62
    • 34548024885 scopus 로고    scopus 로고
    • Molecular aspects on the interaction of protoberberine, benzophenanthridine, and aristolochia group of alkaloids with nucleic acid structures and biological perspectives
    • DOI 10.1002/med.20087
    • M. Maiti, and G.S. Kumar Molecular aspects on the interaction of protoberberine, benzophenanthridine, and aristolochia group of alkaloids with nucleic acid structures and biological perspectives Med. Res. Rev. 27 2007 649 695 (Pubitemid 47282448)
    • (2007) Medicinal Research Reviews , vol.27 , Issue.5 , pp. 649-695
    • Maiti, M.1    Kumar, G.S.2
  • 63
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • DOI 10.1038/nature755
    • G.N. Parkinson, M.P. Lee, and S. Neidle Crystal structure of parallel quadruplexes from human telomeric DNA Nature 417 2002 876 880 (Pubitemid 34670337)
    • (2002) Nature , vol.417 , Issue.6891 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.H.2    Neidle, S.3
  • 67
    • 23844438712 scopus 로고    scopus 로고
    • Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal
    • DOI 10.1093/nar/gki782
    • J. Li, J.J. Correia, L. Wang, J.O. Trent, and J.B. Chaires Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal Nucleic Acids Res. 33 2005 4649 4659 (Pubitemid 41222579)
    • (2005) Nucleic Acids Research , vol.33 , Issue.14 , pp. 4649-4659
    • Li, J.1    Correia, J.J.2    Wang, L.3    Trent, J.O.4    Chaires, J.B.5
  • 69
    • 47249089630 scopus 로고    scopus 로고
    • Polymorphism of human telomeric quadruplex structures
    • J. Dai, M. Carver, and D. Yang Polymorphism of human telomeric quadruplex structures Biochimie 90 2008 1172 1183
    • (2008) Biochimie , vol.90 , pp. 1172-1183
    • Dai, J.1    Carver, M.2    Yang, D.3
  • 70
    • 13644267721 scopus 로고    scopus 로고
    • Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization
    • DOI 10.1021/bi048242p
    • A. Ambrus, D. Chen, J. Dai, R.A. Jones, and D. Yang Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization Biochemistry 44 2005 2048 2058 (Pubitemid 40227475)
    • (2005) Biochemistry , vol.44 , Issue.6 , pp. 2048-2058
    • Ambrus, A.1    Chen, D.2    Dai, J.3    Jones, R.A.4    Yang, D.5
  • 71
    • 80455168261 scopus 로고    scopus 로고
    • C-MYC promoter G-quadruplex formed at the 5′-end of NHE III1 element: Insights into biological relevance and parallel-stranded G-quadruplex stability
    • R.I. Mathad, E. Hatzakis, J. Dai, and D. Yang c-MYC promoter G-quadruplex formed at the 5′-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability Nucleic Acids Res. 39 2011 9023 9033
    • (2011) Nucleic Acids Res. , vol.39 , pp. 9023-9033
    • Mathad, R.I.1    Hatzakis, E.2    Dai, J.3    Yang, D.4
  • 72
    • 34247268502 scopus 로고    scopus 로고
    • 4 repeat in a potassium solution
    • DOI 10.1021/bi602511p
    • C. Antonacci, J.B. Chaires, and R.D. Sheardy Biophysical characterization of the human telomeric (TTAGGG)4 repeat in a potassium solution Biochemistry 46 2007 4654 4660 (Pubitemid 46625520)
    • (2007) Biochemistry , vol.46 , Issue.15 , pp. 4654-4660
    • Antonacci, C.1    Chaires, J.B.2    Sheardy, R.D.3
  • 73
  • 74
    • 0034425217 scopus 로고    scopus 로고
    • Structural basis of DNA recognition by anticancer antibiotics, chromomycin A3, and mithramycin: Roles of minor groove width and ligand flexibility
    • S. Chakrabarti, D. Bhattacharyya, and D. Dasgupta Structural basis of DNA recognition by anticancer antibiotics, chromomycin A3, and mithramycin: roles of minor groove width and ligand flexibility Biopolymers 56 2001 85 95
    • (2001) Biopolymers , vol.56 , pp. 85-95
    • Chakrabarti, S.1    Bhattacharyya, D.2    Dasgupta, D.3
  • 75
    • 0020440236 scopus 로고
    • Determination of binding stoichiometry by the continuous variation method: The Job plot
    • C.Y. Huang Determination of binding stoichiometry by the continuous variation method: the Job plot Methods Enzymol. 87 1982 509 525
    • (1982) Methods Enzymol. , vol.87 , pp. 509-525
    • Huang, C.Y.1
  • 77
    • 0026572767 scopus 로고
    • Role of magnesium ion in the interaction between chromomycin A3 and DNA: Binding of chromomycin A3-magnesium (2 +) complexes with DNA
    • P. Aich, R. Sen, and D. Dasgupta Role of magnesium ion in the interaction between chromomycin A3 and DNA: binding of chromomycin A3-magnesium (2 +) complexes with DNA Biochemistry 31 1992 2988 2997
    • (1992) Biochemistry , vol.31 , pp. 2988-2997
    • Aich, P.1    Sen, R.2    Dasgupta, D.3
  • 79
    • 0025861478 scopus 로고
    • Convex constraint analysis: A natural deconvolution of circular dichroism curves of proteins
    • A. Perczel, M. Hollosi, G. Tusnady, and G.D. Fasman Convex constraint analysis: a natural deconvolution of circular dichroism curves of proteins Protein Eng. 4 1991 669 679
    • (1991) Protein Eng. , vol.4 , pp. 669-679
    • Perczel, A.1    Hollosi, M.2    Tusnady, G.3    Fasman, G.D.4
  • 80
    • 0029026601 scopus 로고
    • Criteria for the mode of binding of DNA binding agents
    • D. Suh, and J.B. Chaires Criteria for the mode of binding of DNA binding agents Bioorg. Med. Chem. 3 1995 723 728
    • (1995) Bioorg. Med. Chem. , vol.3 , pp. 723-728
    • Suh, D.1    Chaires, J.B.2
  • 81
    • 33744772345 scopus 로고    scopus 로고
    • A spectroscopic study on the interactions of porphyrin with G-quadruplex DNAs
    • DOI 10.1021/bi052356z
    • C. Wei, G. Jia, J. Yuan, Z. Feng, and C. Li A spectroscopic study on the interactions of porphyrin with G-quadruplex DNAs Biochemistry 45 2006 6681 6691 (Pubitemid 43825369)
    • (2006) Biochemistry , vol.45 , Issue.21 , pp. 6681-6691
    • Wei, C.1    Jia, G.2    Yuan, J.3    Feng, Z.4    Li, C.5
  • 82
    • 33747802145 scopus 로고    scopus 로고
    • A thermodynamic signature for drug-DNA binding mode
    • J.B. Chaires A thermodynamic signature for drug-DNA binding mode Arch. Biochem. Biophys. 453 2006 26 31
    • (2006) Arch. Biochem. Biophys. , vol.453 , pp. 26-31
    • Chaires, J.B.1
  • 83
    • 49149107193 scopus 로고    scopus 로고
    • Effect of loop orientation on quadruplex - TMPyP4 interaction
    • A. Arora, and S. Maiti Effect of loop orientation on quadruplex - TMPyP4 interaction J. Phys. Chem. B 112 2008 8151 8159
    • (2008) J. Phys. Chem. B , vol.112 , pp. 8151-8159
    • Arora, A.1    Maiti, S.2
  • 84
    • 33947647457 scopus 로고    scopus 로고
    • 1 promoter: Model quadruplex interactions with a cationic porphyrin
    • DOI 10.1529/biophysj.106.097246
    • M.W. Freyer, R. Buscaglia, K. Kaplan, D. Cashman, L.H. Hurley, and E.A. Lewis Biophysical studies of the c-MYC NHE III1 promoter: model quadruplex interactions with a cationic porphyrin Biophys. J. 92 2007 2007 2015 (Pubitemid 46495264)
    • (2007) Biophysical Journal , vol.92 , Issue.6 , pp. 2007-2015
    • Freyer, M.W.1    Buscaglia, R.2    Kaplan, K.3    Cashman, D.4    Hurley, L.H.5    Lewis, E.A.6
  • 85
    • 79953846622 scopus 로고    scopus 로고
    • DSC deconvolution of the structural complexity of c-MYC P1 promoter G-quadruplexes
    • J.M. Dettler, R. Buscaglia, V.H. Le, and E.A. Lewis DSC deconvolution of the structural complexity of c-MYC P1 promoter G-quadruplexes Biophys. J. 100 2011 1517 1525
    • (2011) Biophys. J. , vol.100 , pp. 1517-1525
    • Dettler, J.M.1    Buscaglia, R.2    Le, V.H.3    Lewis, E.A.4
  • 87
    • 77956516586 scopus 로고    scopus 로고
    • Fluorescence of sanguinarine: Spectral changes on interaction with amino acids
    • M. Janovska, M. Kubala, V. Simanek, and J. Ulrichova Fluorescence of sanguinarine: spectral changes on interaction with amino acids Phys. Chem. Chem. Phys. 12 2010 11335 11341
    • (2010) Phys. Chem. Chem. Phys. , vol.12 , pp. 11335-11341
    • Janovska, M.1    Kubala, M.2    Simanek, V.3    Ulrichova, J.4
  • 90
    • 0031079153 scopus 로고    scopus 로고
    • Singlet excited state dynamics of tetrakis(4-N-methylpyridyl)porphine associated with DNA nucleotides
    • R. Jasuja, D.M. Jameson, C.K. Nishijo, and R.W. Larsen Singlet excited state dynamics of tetrakis (4-N-methylpyridyl) porphine associated with DNA nucleotides J. Phys. Chem. B 101 1997 1444 1450 (Pubitemid 127617407)
    • (1997) Journal of Physical Chemistry B , vol.101 , Issue.8 , pp. 1444-1450
    • Jasuja, R.1    Jameson, D.M.2    Nishijo, C.K.3    Larsen, R.W.4
  • 91
    • 84872449842 scopus 로고    scopus 로고
    • Electrospray ionization mass spectrometric exploration of the high-affinity binding of three natural alkaloids with the mRNA G-quadruplex in the BCL2 5′-untranslated region
    • W. Tan, and G. Yuan Electrospray ionization mass spectrometric exploration of the high-affinity binding of three natural alkaloids with the mRNA G-quadruplex in the BCL2 5′-untranslated region Rapid Commun. Mass Spectrom. 27 2013 560 564
    • (2013) Rapid Commun. Mass Spectrom. , vol.27 , pp. 560-564
    • Tan, W.1    Yuan, G.2
  • 92
    • 84871784359 scopus 로고    scopus 로고
    • The crystal structure of human telomeric DNA complexed with berberine: An interesting case of stacked ligand to G-tetrad ratio higher than 1:1
    • C. Bazzicalupi, M. Ferraroni, A.R. Bilia, F. Scheggi, and P. Gratteri The crystal structure of human telomeric DNA complexed with berberine: an interesting case of stacked ligand to G-tetrad ratio higher than 1:1 Nucleic Acids Res. 41 2013 632 638
    • (2013) Nucleic Acids Res. , vol.41 , pp. 632-638
    • Bazzicalupi, C.1    Ferraroni, M.2    Bilia, A.R.3    Scheggi, F.4    Gratteri, P.5
  • 93
    • 0033035891 scopus 로고    scopus 로고
    • Conversions of the left-handed form and the protonated form of DNA back to the bound right-handed form by sanguinarine and ethidium: A comparative study
    • DOI 10.1016/S0301-4622(98)00238-5, PII S0301462298002385
    • S. Das, G.S. Kumar, and M. Maiti Conversions of the left-handed form and the protonated form of DNA back to the bound right-handed form by sanguinarine and ethidium: a comparative study Biophys. Chem. 76 1999 199 218 (Pubitemid 29080766)
    • (1999) Biophysical Chemistry , vol.76 , Issue.3 , pp. 199-218
    • Das, S.1    Kumar, G.S.2    Maiti, M.3
  • 94
    • 61449133312 scopus 로고    scopus 로고
    • Circular dichroism spectra and electrophoretic mobility shift assays show that human replication protein A binds and melts intramolecular G-quadruplex structures
    • J.H. Fan, E. Bochkareva, A. Bochkarev, and D.M. Gray Circular dichroism spectra and electrophoretic mobility shift assays show that human replication protein A binds and melts intramolecular G-quadruplex structures Biochemistry 48 2009 1099 1111
    • (2009) Biochemistry , vol.48 , pp. 1099-1111
    • Fan, J.H.1    Bochkareva, E.2    Bochkarev, A.3    Gray, D.M.4
  • 95
    • 69849097341 scopus 로고    scopus 로고
    • A small molecule that disrupts G-quadruplex DNA structure and enhances gene expression
    • Z.A. Waller, S.A. Sewitz, S.T. Hsu, and S. Balasubramanian A small molecule that disrupts G-quadruplex DNA structure and enhances gene expression J. Am. Chem. Soc. 131 2009 12628 12633
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 12628-12633
    • Waller, Z.A.1    Sewitz, S.A.2    Hsu, S.T.3    Balasubramanian, S.4
  • 96
    • 84861382319 scopus 로고    scopus 로고
    • The porphyrin TmPyP4 unfolds the extremely stable G-quadruplex in MT3-MMP mRNA and alleviates its repressive effect to enhance translation in eukaryotic cells
    • M.J. Morris, K.L. Wingate, J. Silwal, T.C. Leeper, and S. Basu The porphyrin TmPyP4 unfolds the extremely stable G-quadruplex in MT3-MMP mRNA and alleviates its repressive effect to enhance translation in eukaryotic cells Nucleic Acids Res. 40 2012 4137 4145
    • (2012) Nucleic Acids Res. , vol.40 , pp. 4137-4145
    • Morris, M.J.1    Wingate, K.L.2    Silwal, J.3    Leeper, T.C.4    Basu, S.5
  • 99
    • 0036647051 scopus 로고    scopus 로고
    • Thermodynamics of drug-DNA interactions
    • DOI 10.1016/S0003-9861(02)00202-3, PII S0003986102002023
    • I. Haq Thermodynamics of drug-DNA interactions Arch. Biochem. Biophys. 403 2002 1 15 (Pubitemid 34848272)
    • (2002) Archives of Biochemistry and Biophysics , vol.403 , Issue.1 , pp. 1-15
    • Haq, I.1
  • 100
    • 0034713855 scopus 로고    scopus 로고
    • Energetics of DNA intercalation reactions
    • DOI 10.1021/bi000474a
    • J. Ren, T.C. Jenkins, and J.B. Chaires Energetics of DNA intercalation reactions Biochemistry 39 2000 8439 8447 (Pubitemid 30489940)
    • (2000) Biochemistry , vol.39 , Issue.29 , pp. 8439-8447
    • Ren, J.1    Jenkins, T.C.2    Chaires, J.B.3
  • 101
    • 47649122998 scopus 로고    scopus 로고
    • Targeting human telomeric G-quadruplex DNA with oxazole-containing macrocyclic compounds
    • D.S. Pilch, C.M. Barbieri, S.G. Rzuczek, E.J. Lavoie, and J.E. Rice Targeting human telomeric G-quadruplex DNA with oxazole-containing macrocyclic compounds Biochimie 90 2008 1233 1249
    • (2008) Biochimie , vol.90 , pp. 1233-1249
    • Pilch, D.S.1    Barbieri, C.M.2    Rzuczek, S.G.3    Lavoie, E.J.4    Rice, J.E.5
  • 102
    • 0024378717 scopus 로고
    • Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
    • DOI 10.1016/0022-2836(89)90608-6
    • J.H. Ha, R.S. Spolar, and M.T. Record Jr. Role of the hydrophobic effect in stability of site-specific protein-DNA complexes J. Mol. Biol. 209 1989 801 816 (Pubitemid 20046133)
    • (1989) Journal of Molecular Biology , vol.209 , Issue.4 , pp. 801-816
    • Ha, J.-H.1    Spolar, R.S.2    Record Jr., M.T.3
  • 103
    • 0026664432 scopus 로고
    • Relation between the convergence temperatures Th* and Ts* in protein unfolding
    • R.L. Baldwin, and N. Muller Relation between the convergence temperatures Th* and Ts* in protein unfolding Proc. Natl. Acad. Sci. U. S. A. 89 1992 7110 7113
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 7110-7113
    • Baldwin, R.L.1    Muller, N.2
  • 104
    • 0001505226 scopus 로고    scopus 로고
    • Thermodynamic and kinetic characterization of the dissociation and assembly of quadruplex nucleic acids
    • DOI 10.1002/1097-0282(200 0/2001)56:3<147::AID-BIP10011>3. 0.CO;2-N
    • C.C. Hardin, A.G. Perry, and K. White Thermodynamic and kinetic characterization of the dissociation and assembly of quadruplex nucleic acids Biopolymers 56 2000 147 194 (Pubitemid 33115750)
    • (2000) Biopolymers , vol.56 , Issue.3 , pp. 147-194
    • Hardin, C.C.1    Perry, A.G.2    White, K.3
  • 105
    • 33646345847 scopus 로고    scopus 로고
    • Unfolding of G-quadruplexes: Energetic, and ion and water contributions of G-quartet stacking
    • DOI 10.1021/jp0574697
    • C.M. Olsen, W.H. Gmeiner, and L.A. Marky Unfolding of G-quadruplexes: energetic, and ion and water contributions of G-quartet stacking J. Phys. Chem. B 110 2006 6962 6969 (Pubitemid 43672168)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.13 , pp. 6962-6969
    • Olsen, C.M.1    Gmeiner, W.H.2    Marky, L.A.3
  • 106
    • 84862912035 scopus 로고    scopus 로고
    • Recognize three different human telomeric G-quadruplex conformations by quinacrine
    • H. Sun, J. Xiang, Q. Li, Y. Liu, L. Li, Q. Shang, G. Xu, and Y. Tang Recognize three different human telomeric G-quadruplex conformations by quinacrine Analyst 137 2012 862 867
    • (2012) Analyst , vol.137 , pp. 862-867
    • Sun, H.1    Xiang, J.2    Li, Q.3    Liu, Y.4    Li, L.5    Shang, Q.6    Xu, G.7    Tang, Y.8
  • 107
    • 59449107619 scopus 로고    scopus 로고
    • Ligand binding to tandem G quadruplexes from human telomeric DNA
    • L.P. Bai, M. Hagihara, Z.H. Jiang, and K. Nakatani Ligand binding to tandem G quadruplexes from human telomeric DNA ChemBioChem 9 2008 2583 2587
    • (2008) ChemBioChem , vol.9 , pp. 2583-2587
    • Bai, L.P.1    Hagihara, M.2    Jiang, Z.H.3    Nakatani, K.4
  • 108
    • 81855185596 scopus 로고    scopus 로고
    • Inhibition of Stat3 activation by sanguinarine suppresses prostate cancer cell growth and invasion
    • M. Sun, C. Liu, N. Nadiminty, W. Lou, Y. Zhu, J. Yang, C.P. Evans, Q. Zhou, and A.C. Gao Inhibition of Stat3 activation by sanguinarine suppresses prostate cancer cell growth and invasion Prostate 72 2012 82 89
    • (2012) Prostate , vol.72 , pp. 82-89
    • Sun, M.1    Liu, C.2    Nadiminty, N.3    Lou, W.4    Zhu, Y.5    Yang, J.6    Evans, C.P.7    Zhou, Q.8    Gao, A.C.9
  • 109
  • 110
    • 84875464903 scopus 로고    scopus 로고
    • Quantitative visualization of DNA G-quadruplex structures in human cells
    • G. Biffi, D. Tannahill, J. McCafferty, and S. Balasubramanian Quantitative visualization of DNA G-quadruplex structures in human cells Nat. Chem. 5 2013 182 186
    • (2013) Nat. Chem. , vol.5 , pp. 182-186
    • Biffi, G.1    Tannahill, D.2    McCafferty, J.3    Balasubramanian, S.4


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