-
1
-
-
84860338675
-
R loops: From transcription byproducts to threats to genome stability
-
Aguilera A, Garćia-Muse T. 2012. R loops: From transcription byproducts to threats to genome stability. Mol. Cell 46:115-244
-
(2012)
Mol. Cell
, vol.46
, pp. 115-244
-
-
Aguilera, A.1
Garćia-Muse, T.2
-
3
-
-
0023663919
-
Optical trapping andmanipulation of single cells using infraredlaser beams
-
AshkinA,Dziedzic JM,YamaneT. 1987. Optical trapping andmanipulation of single cells using infraredlaser beams. Nature 330:769-711
-
(1987)
Nature
, vol.330
, pp. 769-711
-
-
Ashkin, A.1
Dziedzic, J.M.2
Yamane, T.3
-
4
-
-
33745059535
-
Structural plasticity of single chromatin fibers revealed by torsional manipulation
-
Bancaud A, Conde e SilvaN, Barbi M, Wagner G, Allemand JF, et al. 2006. Structural plasticity of single chromatin fibers revealed by torsional manipulation. Nat. Struct. Mol. Biol. 13:444-500
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 444-500
-
-
Bancaud, A.1
Conde Silva E, N.2
Barbi, M.3
Wagner, G.4
Allemand, J.F.5
-
5
-
-
84863418617
-
The importance of being supercoiled: How DNA mechanics regulate dynamic processes
-
1819
-
Baranello L, Levens D, Gupta A, Kouzine F. 2012. The importance of being supercoiled: How DNA mechanics regulate dynamic processes. Biochim. Biophys. Acta 1819:632-388
-
(2012)
Biochim. Biophys. Acta
, pp. 632-388
-
-
Baranello, L.1
Levens, D.2
Gupta, A.3
Kouzine, F.4
-
6
-
-
0041673353
-
The rotary motor of bacterial flagella
-
Berg HC. 2003. The rotary motor of bacterial flagella. Annu. Rev. Biochem. 72:19-544
-
(2003)
Annu. Rev. Biochem
, vol.72
, pp. 19-544
-
-
Berg, H.C.1
-
7
-
-
0015897650
-
Bacteria swim by rotating their flagellar filaments
-
Berg HC, Anderson RA. 1973. Bacteria swim by rotating their flagellar filaments. Nature 245:380-822
-
(1973)
Nature
, vol.245
, pp. 380-822
-
-
Berg, H.C.1
Anderson, R.A.2
-
8
-
-
0027365641
-
Torque generated by the flagellar motor of Escherichia coli
-
Berg HC,Turner L. 1993. Torque generated by the flagellar motor of Escherichia coli. Biophys. J. 65:2201- 166
-
(1993)
Biophys. J.
, vol.65
, pp. 2201-2176
-
-
Berg, H.C.1
Turner, L.2
-
9
-
-
84859042868
-
Preventing replication stress tomaintain genome stability: Resolving conflicts between replication and transcription
-
Bermejo R, Lai MS, FoianiM. 2012. Preventing replication stress tomaintain genome stability: Resolving conflicts between replication and transcription. Mol. Cell 45:710-188
-
(2012)
Mol. Cell
, vol.45
, pp. 710-188
-
-
Bermejo, R.1
Lai, M.S.2
Foiani, M.3
-
11
-
-
0031460634
-
Absence of a barrier to backwards rotation of the bacterial flagellar motor demonstrated with optical tweezers
-
Berry RM, Berg HC. 1997. Absence of a barrier to backwards rotation of the bacterial flagellar motor demonstrated with optical tweezers. Proc. Natl. Acad. Sci. USA 94:14433-377
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14433-14387
-
-
Berry, R.M.1
Berg, H.C.2
-
12
-
-
0242610824
-
Optical application and measurement of torque on microparticles of isotropic nonabsorbing material
-
Bishop AI, Nieminen TA, Heckenberg NR, Rubinsztein-Dunlop H. 2003. Optical application and measurement of torque on microparticles of isotropic nonabsorbing material. Phys. Rev. A 68:88
-
(2003)
Phys. Rev
, vol.A 68
, pp. 88
-
-
Bishop, A.I.1
Nieminen, T.A.2
Heckenberg, N.R.3
Rubinsztein-Dunlop, H.4
-
13
-
-
0038013991
-
RNA polymerase holoenzyme: Structure, function and biological implications
-
Borukhov S, Nudler E. 2003. RNA polymerase holoenzyme: Structure, function and biological implications. Curr. Opin. Microbiol. 6:93-1000
-
(2003)
Curr. Opin. Microbiol
, vol.6
, pp. 93-1000
-
-
Borukhov, S.1
Nudler, E.2
-
14
-
-
77649165394
-
Maintaining genome stability at the replication fork
-
Branzei D, FoianiM. 2010. Maintaining genome stability at the replication fork. Nat. Rev. Mol. Cell Biol. 11:208-199
-
(2010)
Nat. Rev. Mol. Cell Biol
, Issue.11
, pp. 208-199
-
-
Branzei, D.1
Foiani, M.2
-
15
-
-
70549099970
-
The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics
-
Brooks TA, Hurley LH. 2009. The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics. Nat. Rev. Cancer 9:849-611
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 849-611
-
-
Brooks, T.A.1
Hurley, L.H.2
-
16
-
-
0037133348
-
Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA
-
Brower-Toland BD, Smith CL, Yeh RC, Lis JT, Peterson CL,WangMD. 2002. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc. Natl. Acad. Sci. USA 99:1960-655
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1960-1665
-
-
Brower-Toland, B.D.1
Smith, C.L.2
Yeh, R.C.3
Lis, J.T.4
Peterson, C.L.5
Wang, M.D.6
-
17
-
-
77950659882
-
Energetics at theDNA supercoiling transition
-
BrutzerH, Luzzietti N, KlaueD, Seidel R. 2010. Energetics at theDNA supercoiling transition. Biophys. J. 98:1267-766
-
(2010)
Biophys. J.
, Issue.98
, pp. 1267-1766
-
-
Brutzerh Luzzietti, N.1
Klaued Seidel, R.2
-
19
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant Z, StoneMD, Gore J, Smith SB, Cozzarelli NR, Bustamante C. 2003. Structural transitions and elasticity from torque measurements on DNA. Nature 424:338-411
-
(2003)
Nature
, vol.424
, pp. 338-411
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
Smith, S.B.4
Cozzarelli, N.R.5
Bustamante, C.6
-
20
-
-
0036496185
-
Mechanism of the F1F0-type ATP synthase, a biological rotary motor
-
Capaldi RA, Aggeler R. 2002. Mechanism of the F1F0-type ATP synthase, a biological rotary motor. Trends Biochem. Sci. 27:154-600
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 154-600
-
-
Capaldi, R.A.1
Aggeler, R.2
-
21
-
-
65249161305
-
Magnetic tweezers measurement of single molecule torque
-
Celedon A, Nodelman IM,Wildt B, Dewan R, Searson P, et al. 2009. Magnetic tweezers measurement of single molecule torque. Nano Lett. 9:1720-255
-
(2009)
Nano Lett
, vol.9
, pp. 1720-1265
-
-
Celedon, A.1
Nodelman, I.M.2
Wildt, B.3
Dewan, R.4
Searson, P.5
-
22
-
-
78650358573
-
Torsional mechanics of DNA are regulated by small-molecule intercalation
-
Celedon A, Wirtz D, Sun S. 2010. Torsional mechanics of DNA are regulated by small-molecule intercalation. J. Phys. Chem. B 114:16929-355
-
(2010)
J. Phys. Chem.
, vol.B114
, pp. 16929-16365
-
-
Celedon, A.1
Wirtz, D.2
Sun, S.3
-
23
-
-
0026782093
-
Activity of a plasmid-borne Leu-500 promoter depends on the transcription and translation of an adjacent gene
-
Chen D, Bowater R, Dorman CJ, Lilley DM. 1992. Activity of a plasmid-borne Leu-500 promoter depends on the transcription and translation of an adjacent gene. Proc. Natl. Acad. Sci. USA 89:8784-888
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 8784-8888
-
-
Chen, D.1
Bowater, R.2
Dorman, C.J.3
Lilley, D.M.4
-
24
-
-
0034036156
-
Torque-speed relationship of the flagellar rotary motor of Escherichia coli
-
Chen X, Berg HC. 2000. Torque-speed relationship of the flagellar rotary motor of Escherichia coli. Biophys. J. 78:1036-411
-
(2000)
Biophys. J.
, vol.78
, pp. 1036-1411
-
-
Chen, X.1
Berg, H.C.2
-
25
-
-
0025965065
-
Formation of nucleosomes on positively supercoiled DNA
-
Clark DJ, Felsenfeld G. 1991. Formation of nucleosomes on positively supercoiled DNA. EMBO J. 10:387-955
-
(1991)
EMBO J.
, vol.10
, pp. 387-955
-
-
Clark, D.J.1
Felsenfeld, G.2
-
26
-
-
33748335686
-
Giant proteins that move DNA: Bullies of the genomic playground
-
Cozzarelli NR, Cost GJ, NollmannM, Viard T, Stray JE. 2006. Giant proteins that move DNA: Bullies of the genomic playground. Nat. Rev. Mol. Cell Biol. 7:580-888
-
(2006)
Nat. Rev. Mol. Cell Biol
, vol.7
, pp. 580-888
-
-
Cozzarelli, N.R.1
Cost, G.J.2
Nollmann, M.3
Viard, T.4
Stray, J.E.5
-
27
-
-
70350534421
-
Discontinuities at theDNAsupercoiling transition
-
Daniels BC, Forth S, Sheinin MY,WangMD, Sethna JP. 2009. Discontinuities at theDNAsupercoiling transition. Phys. Rev. E 80:44
-
(2009)
Phys. Rev
, vol.E 80
, pp. 44
-
-
Daniels, B.C.1
Forth, S.2
Sheinin, M.Y.3
Wang, M.D.4
Sethna, J.P.5
-
29
-
-
33847672227
-
Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection
-
Deufel C, Forth S, Simmons CR, Dejgosha S, Wang MD. 2007. Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection. Nat. Methods 4:223-255
-
(2007)
Nat. Methods
, vol.4
, pp. 223-255
-
-
Deufel, C.1
Forth, S.2
Simmons, C.R.3
Dejgosha, S.4
Wang, M.D.5
-
30
-
-
0026555506
-
Control of bacterial DNA supercoiling
-
Drlica K. 1992. Control of bacterial DNA supercoiling. Mol. Microbiol. 6:425-333
-
(1992)
Mol. Microbiol
, vol.6
, pp. 425-333
-
-
Drlica, K.1
-
31
-
-
33846820469
-
Topological locking restrains replication fork reversal
-
Fierro-Ferńandez M, Herńandez P, Krimer DB, Stasiak A, Schvartzman JB. 2007. Topological locking restrains replication fork reversal. Proc. Natl. Acad. Sci. USA 104:1500-55
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 1500-1555
-
-
Fierro-Ferńandez, M.1
Herńandez, P.2
Krimer, D.B.3
Stasiak, A.4
Schvartzman, J.B.5
-
32
-
-
80052434088
-
Direct measurements of torque during Holliday junction migration
-
Forth S, Deufel C, Patel SS, Wang MD. 2011. Direct measurements of torque during Holliday junction migration. Biophys. J. 101:L5-77
-
(2011)
Biophys. J.
-
-
Forth, S.1
Deufel, C.2
Patel, S.S.3
Wang, M.D.4
-
33
-
-
41949110996
-
Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules
-
Forth S, Deufel C, Sheinin MY, Daniels B, Sethna JP, Wang MD. 2008. Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules. Phys. Rev. Lett. 100:44
-
(2008)
Phys. Rev. Lett
, vol.100
, pp. 44
-
-
Forth, S.1
Deufel, C.2
Sheinin, M.Y.3
Daniels, B.4
Sethna, J.P.5
Wang, M.D.6
-
34
-
-
78751519300
-
Distinguishing the roles of topoisomerases i and II in relief of transcription-induced torsional stress in yeast rRNA genes
-
French SL, Sikes ML, Hontz RD, Osheim YN, Lambert TE, et al. 2011. Distinguishing the roles of topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes. Mol. Cell. Biol. 31:482-944
-
(2011)
Mol. Cell. Biol
, Issue.31
, pp. 482-944
-
-
French, S.L.1
Sikes, M.L.2
Hontz, R.D.3
Osheim, Y.N.4
Lambert, T.E.5
-
36
-
-
58349116037
-
Constant power optical tweezers with controllable torque
-
Funk M, Parkin SJ, Stilgoe AB,NieminenTA, Heckenberg NR, Rubinsztein-Dunlop H. 2009. Constant power optical tweezers with controllable torque. Opt. Lett. 34:139-411
-
(2009)
Opt. Lett
, vol.34
, pp. 139-411
-
-
Funk, M.1
Parkin, S.J.2
Stilgoe, A.B.3
Nieminen, T.A.4
Heckenberg, N.R.5
Rubinsztein-Dunlop, H.6
-
37
-
-
0242422950
-
Orientation of flat particles in optical tweezers by linearly polarized light
-
Galajda P, Ormos P. 2003. Orientation of flat particles in optical tweezers by linearly polarized light. Opt. Express 11:446-511
-
(2003)
Opt. Express
, vol.11
, pp. 446-511
-
-
Galajda, P.1
Ormos, P.2
-
39
-
-
33747461393
-
DNA overwinds when stretched
-
Gore J, Bryant Z, Noellmann M, Le MU, Cozzarelli NR, Bustamante C. 2006. DNA overwinds when stretched. Nature 442:836-399
-
(2006)
Nature
, vol.442
, pp. 836-399
-
-
Gore, J.1
Bryant, Z.2
Noellmann, M.3
Le, M.U.4
Cozzarelli, N.R.5
Bustamante, C.6
-
40
-
-
30144434477
-
Mechanochemical analysis of DNA gyrase using rotor bead tracking
-
Gore J, Bryant Z, Stone MD, Nollmann MN, Cozzarelli NR, Bustamante C. 2006. Mechanochemical analysis of DNA gyrase using rotor bead tracking. Nature 439:100-44
-
(2006)
Nature
, vol.439
, pp. 100-144
-
-
Gore, J.1
Bryant, Z.2
Stone, M.D.3
Nollmann, M.N.4
Cozzarelli, N.R.5
Bustamante, C.6
-
41
-
-
77954611277
-
An optical apparatus for rotation and trapping
-
Gutíerrez-Medina B, Andreasson JOL, Greenleaf WJ, LaPorta A, Block SM. 2010. An optical apparatus for rotation and trapping. Methods Enzymol. 475:377-4044
-
(2010)
Methods Enzymol
, Issue.475
, pp. 377-4044
-
-
Gutíerrez-Medina, B.1
Andreasson, J.O.L.2
Greenleaf, W.J.3
Laporta, A.4
Block, S.M.5
-
42
-
-
70350129029
-
Direct measurements of kinesin torsional properties reveal flexible domains and occasional stalk reversals during stepping
-
Gutíerrez-Medina B, Fehr AN, Block SM. 2009. Direct measurements of kinesin torsional properties reveal flexible domains and occasional stalk reversals during stepping. Proc. Natl. Acad. Sci. USA 106:17007-122
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17007-17122
-
-
Gutíerrez-Medina, B.1
Fehr, A.N.2
Block, S.M.3
-
43
-
-
0035804245
-
Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase
-
Harada Y, Ohara O, Takatsuki A, Itoh H, Shimamoto N, Kinosita K. 2001. Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase. Nature 409:113-155
-
(2001)
Nature
, vol.409
, pp. 113-155
-
-
Harada, Y.1
Ohara, O.2
Takatsuki, A.3
Itoh, H.4
Shimamoto, N.5
Kinosita, K.6
-
44
-
-
0036953237
-
DNAtopology-mediated control of global gene expression in Escherichia coli
-
HatfieldGW,BenhamCJ. 2002.DNAtopology-mediated control of global gene expression in Escherichia coli. Annu. Rev. Genet. 36:175-2033
-
(2002)
Annu. Rev. Genet
, vol.36
, pp. 175-2033
-
-
Hatfield, G.W.1
Benham, C.J.2
-
45
-
-
79951903196
-
Electron beam fabrication of birefringent microcylinders
-
Huang ZX, Pedaci F, van Oene M, Wiggin MJ, Dekker NH. 2011. Electron beam fabrication of birefringent microcylinders. ACS Nano 5:1418-277
-
(2011)
ACS Nano
, vol.5
, pp. 1418-1287
-
-
Huang, Z.X.1
Pedaci, F.2
Van Oene, M.3
Wiggin, M.J.4
Dekker, N.H.5
-
46
-
-
77956328121
-
Passive torque wrench and angular position detection using a single-beam optical trap
-
Inman J, Forth S, Wang MD. 2010. Passive torque wrench and angular position detection using a single-beam optical trap. Opt. Lett. 35:2949-511
-
(2010)
Opt. Lett
, Issue.35
, pp. 2949-2521
-
-
Inman, J.1
Forth, S.2
Wang, M.D.3
-
47
-
-
84863856881
-
-
Nano Lett
-
Janssen XJA, Lipfert J, Jager T, Daudey R, Beekman J, Dekker NH. 2012. Electromagnetic torque tweezers: A versatile approach for measurement of single-molecule twist and torque. Nano Lett. 12:3634- 399
-
(2012)
Electromagnetic torque tweezers: A versatile approach for measurement of single-molecule twist and torque
, Issue.12
, pp. 3634-3399
-
-
Janssen, X.J.A.1
Lipfert, J.2
Jager, T.3
Daudey, R.4
Beekman, J.5
Dekker, N.H.6
-
48
-
-
34250766751
-
Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase
-
Johnson DS, Bai L, Smith BY, Patel SS, Wang MD. 2007. Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase. Cell 129:1299-3099
-
(2007)
Cell
, vol.129
, pp. 1299-3099
-
-
Johnson, D.S.1
Bai, L.2
Smith, B.Y.3
Patel, S.S.4
Wang, M.D.5
-
49
-
-
1142298633
-
Basic theory of dielectrophoresis and electrorotation
-
Jones TB. 2003. Basic theory of dielectrophoresis and electrorotation. IEEE Eng. Medicine Biol. Mag. 22:33-422
-
(2003)
IEEE Eng Medicine Biol. Mag
, vol.22
, pp. 33-422
-
-
Jones, T.B.1
-
50
-
-
66249132322
-
Torque generation and elastic power transmission in the rotary F0F1-ATPase
-
JungeW, SielaffH, Engelbrecht S. 2009. Torque generation and elastic power transmission in the rotary F0F1-ATPase. Nature 459:364-700
-
(2009)
Nature
, vol.459
, pp. 364-700
-
-
Junge, W.1
Sielaff, H.2
Engelbrecht, S.3
-
52
-
-
59149096327
-
Torsional stiffness of single superparamagnetic microspheres in an external magnetic field
-
Klaue D, Seidel R. 2009. Torsional stiffness of single superparamagnetic microspheres in an external magnetic field. Phys. Rev. Lett. 102:44
-
(2009)
Phys. Rev. Lett
, vol.102
, pp. 44
-
-
Klaue, D.1
Seidel, R.2
-
53
-
-
34948867142
-
Myosin-V makes two Brownian 90 degrees rotations per 36-nm step
-
Komori Y, Iwane AH, Yanagida T. 2007. Myosin-V makes two Brownian 90 degrees rotations per 36-nm step. Nat. Struct. Mol. Biol. 14:968-733
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 968-733
-
-
Komori, Y.1
Iwane, A.H.2
Yanagida, T.3
-
54
-
-
77955629227
-
Cellular strategies for regulating DNA supercoiling: A single-molecule perspective
-
Koster DA, Crut A, Shuman S, BjornstiMA, Dekker NH. 2010. Cellular strategies for regulating DNA supercoiling: A single-molecule perspective. Cell 142:519-300
-
(2010)
Cell
, vol.142
, pp. 519-300
-
-
Koster, D.A.1
Crut, A.2
Shuman, S.3
Bjornsti, M.A.4
Dekker, N.H.5
-
55
-
-
34347231949
-
Supercoil-drivenDNAstructures regulate genetic transactions
-
Kouzine F, LevensD. 2007. Supercoil-drivenDNAstructures regulate genetic transactions. Front. Biosci. 12:4409-233
-
(2007)
Front. Biosci
, vol.12
, pp. 4409-4243
-
-
Kouzine, F.1
Levens, D.2
-
57
-
-
0024786678
-
TheDNAunwinding element: A novel, cis-acting component that facilitates opening of the Escherichia coli replication origin
-
Kowalski D, Eddy MJ. 1989. TheDNAunwinding element: A novel, cis-acting component that facilitates opening of the Escherichia coli replication origin. EMBO J. 8:4335-444
-
(1989)
EMBO J.
, vol.8
, pp. 4335-4444
-
-
Kowalski, D.1
Eddy, M.J.2
-
59
-
-
18144444347
-
Optical torque wrench: Angular trapping, rotation, and torque detection of quartz microparticles
-
La Porta A,Wang MD. 2004. Optical torque wrench: Angular trapping, rotation, and torque detection of quartz microparticles. Phys. Rev. Lett. 92:44
-
(2004)
Phys. Rev. Lett
, vol.92
, pp. 44
-
-
La Porta, A.1
Wang, M.D.2
-
60
-
-
18344386476
-
Structural transitions of a twisted and stretched DNA molecule
-
Leger J, Romano G, Sarkar A, Robert J, Bourdieu L, et al. 1999. Structural transitions of a twisted and stretched DNA molecule. Phys. Rev. Lett. 83:1066-699
-
(1999)
Phys. Rev. Lett
, vol.83
, pp. 1066-1699
-
-
Leger, J.1
Romano, G.2
Sarkar, A.3
Robert, J.4
Bourdieu, L.5
-
61
-
-
16844366808
-
Histone release during transcription: Displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress
-
Levchenko V, Jackson B, Jackson V. 2005. Histone release during transcription: Displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress. Biochemistry 44:5357-722
-
(2005)
Biochemistry
, vol.44
, pp. 5357-5722
-
-
Levchenko, V.1
Jackson, B.2
Jackson, V.3
-
62
-
-
0041817952
-
Effect of varying the supercoiling of DNA on transcription and its regulation
-
Lim HM, Lewis DE, Lee HJ, Liu M, Adhya S. 2003. Effect of varying the supercoiling of DNA on transcription and its regulation. Biochemistry 42:10718-255
-
(2003)
Biochemistry
, vol.42
, pp. 10718-10265
-
-
Lim, H.M.1
Lewis, D.E.2
Lee, H.J.3
Liu, M.4
Adhya, S.5
-
63
-
-
33646434827
-
Wringing out dna
-
Lionnet T, Joubaud S, Lavery R, Bensimon D, Croquette V. 2006. Wringing out DNA. Phys. Rev. Lett. 96:44
-
(2006)
Phys. Rev. Lett
, Issue.96
, pp. 44
-
-
Lionnet, T.1
Joubaud, S.2
Lavery, R.3
Bensimon, D.4
Croquette, V.5
-
65
-
-
78649709362
-
Magnetic torque tweezers: Measuring torsional stiffness in DNA and RecA-DNA filaments
-
Lipfert J,Kerssemakers JWJ, JagerT,Dekker NH. 2010. Magnetic torque tweezers: Measuring torsional stiffness in DNA and RecA-DNA filaments. Nat. Methods 7:977-800
-
(2010)
Nat. Methods
, vol.7
, pp. 977-800
-
-
Lipfert, J.1
Kerssemakers, J.W.J.2
Jager, T.3
Dekker, N.H.4
-
66
-
-
80052404576
-
Freely orbitingmagnetic tweezers to directly monitor changes in the twist of nucleic acids
-
Lipfert J,WigginM, Kerssemakers JWJ, Pedaci F, DekkerNH. 2011. Freely orbitingmagnetic tweezers to directly monitor changes in the twist of nucleic acids. Nat. Commun. 2:99
-
(2011)
Nat. Commun
, Issue.2
, pp. 99
-
-
Lipfert, J.1
Wiggin, M.2
Kerssemakers, J.W.J.3
Pedaci, F.4
Dekker, N.H.5
-
67
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
Liphardt J, Onoa B, Smith SB, Tinoco I, Bustamante C. 2001. Reversible unfolding of single RNA molecules by mechanical force. Science 292:733-377
-
(2001)
Science
, vol.292
, pp. 733-377
-
-
Liphardt, J.1
Onoa, B.2
Smith, S.B.3
Tinoco, I.4
Bustamante, C.5
-
68
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu LF, Wang JC. 1987. Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. USA 84:7024-277
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7024-7277
-
-
Liu, L.F.1
Wang, J.C.2
-
69
-
-
0026773938
-
Localized torsional tension in the DNA of human cells
-
Ljungman M, Hanawalt PC. 1992. Localized torsional tension in the DNA of human cells. Proc. Natl. Acad. Sci. USA 89:6055-599
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 6055-6599
-
-
Ljungman, M.1
Hanawalt, P.C.2
-
70
-
-
0023128224
-
Rapid rotation of flagellar bundles in swimming bacteria
-
Lowe G, Meister M, Berg HC. 1987. Rapid rotation of flagellar bundles in swimming bacteria. Nature 325:637-400
-
(1987)
Nature
, vol.325
, pp. 637-400
-
-
Lowe, G.1
Meister, M.2
Berg, H.C.3
-
71
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 ̊a resolution
-
Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2.8 ̊A resolution. Nature 389:251-600
-
(1997)
Nature
, vol.389
, pp. 251-600
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
72
-
-
84877755806
-
Very fast flagellar rotation
-
Magariyama Y, Sugiyama S, Muramoto K, Maekawa Y, Kawagishi I, et al. 1994. Very fast flagellar rotation. Nature 371:7522
-
(1994)
Nature
, vol.371
, pp. 7522
-
-
Magariyama, Y.1
Sugiyama, S.2
Muramoto, K.3
Maekawa, Y.4
Kawagishi, I.5
-
73
-
-
34548403896
-
Torque and dynamics of linking number relaxation in stretched supercoiled DNA
-
Marko JF. 2007. Torque and dynamics of linking number relaxation in stretched supercoiled DNA. Phys. Rev. E 76:133
-
(2007)
Phys. Rev
, vol.E 76
, pp. 133
-
-
Marko, J.F.1
-
75
-
-
0031474159
-
Torsional directed walks, entropic elasticity, and DNA twist stiffness
-
Moroz JD, Nelson P. 1997. Torsional directed walks, entropic elasticity, and DNA twist stiffness. Proc. Natl. Acad. Sci. USA 94:14418-222
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14418-14232
-
-
Moroz, J.D.1
Nelson, P.2
-
76
-
-
61349129512
-
Measurement of the torque on a single stretched and twisted DNA using magnetic tweezers
-
Mosconi F, Allemand JF, Bensimon D, Croquette V. 2009. Measurement of the torque on a single stretched and twisted DNA using magnetic tweezers. Phys. Rev. Lett. 102:44
-
(2009)
Phys. Rev. Lett
, Issue.102
, pp. 44
-
-
Mosconi, F.1
Allemand, J.F.2
Bensimon, D.3
Croquette, V.4
-
78
-
-
0030934380
-
Direct observation of the rotation of F1-ATPase
-
Noji H, Yasuda R, YoshidaM,KinositaK. 1997. Direct observation of the rotation of F1-ATPase. Nature 386:299-3022
-
(1997)
Nature
, vol.386
, pp. 299-3022
-
-
Noji, H.1
Yasuda, R.2
Yoshida, M.3
Kinosita, K.4
-
79
-
-
0036574758
-
Rotational control within optical tweezers by use of a rotating aperture
-
O'Neil AT, Padgett MJ. 2002. Rotational control within optical tweezers by use of a rotating aperture. Opt. Lett. 27:743-455
-
(2002)
Opt. Lett
, vol.27
, pp. 743-455
-
-
O'Neil, A.T.1
Padgett, M.J.2
-
80
-
-
84860012641
-
Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA
-
Oberstrass FC, Fernandes LE, Bryant Z. 2012. Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA. Proc. Natl. Acad. Sci. USA 109:6106-111
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 6106-6111
-
-
Oberstrass, F.C.1
Fernandes, L.E.2
Bryant, Z.3
-
81
-
-
33746631341
-
Direct measurement of torque in an optical trap and its application to double-strand DNA
-
Oroszi L, Galajda P, Kirei H, Bottka S, Ormos P. 2006. Direct measurement of torque in an optical trap and its application to double-strand DNA. Phys. Rev. Lett. 97:44
-
(2006)
Phys. Rev. Lett
, vol.97
, pp. 44
-
-
Oroszi, L.1
Galajda, P.2
Kirei, H.3
Bottka, S.4
Ormos, P.5
-
82
-
-
0037333239
-
Rotary protein motors
-
Oster G, Wang H. 2003. Rotary protein motors. Trends Cell Biol. 13:114-211
-
(2003)
Trends Cell Biol
, vol.13
, pp. 114-211
-
-
Oster, G.1
Wang, H.2
-
83
-
-
0025776150
-
Local supercoil-stabilized DNA structures
-
Palecek E. 1991. Local supercoil-stabilized DNA structures. Crit. Rev. Biochem. Mol. Biol. 26:151-2266
-
(1991)
Crit. Rev. Biochem. Mol. Biol
, vol.26
, pp. 151-2266
-
-
Palecek, E.1
-
84
-
-
33746370062
-
Measurement of the total optical angular momentum transfer in optical tweezers
-
Parkin S, Knöner G, Nieminen TA, Heckenberg NR, Rubinsztein-Dunlop H. 2006. Measurement of the total optical angular momentum transfer in optical tweezers. Opt. Express 14:6963-700
-
(2006)
Opt. Express
, vol.14
, pp. 6963-6710
-
-
Parkin, S.1
Knöner, G.2
Nieminen, T.A.3
Heckenberg, N.R.4
Rubinsztein-Dunlop, H.5
-
85
-
-
0035805126
-
Controlled rotation of optically trapped microscopic particles
-
Paterson L, MacDonald MP, Arlt J, Sibbett W, Bryant PE, Dholakia K. 2001. Controlled rotation of optically trapped microscopic particles. Science 292:912-144
-
(2001)
Science
, vol.292
, pp. 912-144
-
-
Paterson, L.1
MacDonald, M.P.2
Arlt, J.3
Sibbett, W.4
Bryant, P.E.5
Dholakia, K.6
-
86
-
-
0025091721
-
In vitro evidence that transcription-induced stress causes nucleosome dissolution and regeneration
-
Pfaffle P, Gerlach V, Bunzel L, Jackson V. 1990. In vitro evidence that transcription-induced stress causes nucleosome dissolution and regeneration. J. Biol. Chem. 265:16830-400
-
(1990)
J. Biol. Chem
, Issue.265
, pp. 16830-16410
-
-
Pfaffle, P.1
Gerlach, V.2
Bunzel, L.3
Jackson, V.4
-
87
-
-
0025075435
-
Studies on rates of nucleosome formation with DNA under stress
-
Pfaffle P, Jackson V. 1990. Studies on rates of nucleosome formation with DNA under stress. J. Biol. Chem. 265:16821-299
-
(1990)
J. Biol. Chem
, Issue.265
, pp. 16821-16299
-
-
Pfaffle, P.1
Jackson, V.2
-
88
-
-
0035902590
-
Topological challenges to DNA replication: Conformations at the fork
-
Postow L, Crisona NJ, Peter BJ, Hardy CD, Cozzarelli NR. 2001. Topological challenges to DNA replication: Conformations at the fork. Proc. Natl. Acad. Sci. USA 98:8219-266
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8219-8266
-
-
Postow, L.1
Crisona, N.J.2
Peter, B.J.3
Hardy, C.D.4
Cozzarelli, N.R.5
-
89
-
-
0035951787
-
Positive torsional strain causes the formation of a four-way junction at replication forks
-
Postow L, Ullsperger C, Keller RW, Bustamante C, Vologodskii AV, Cozzarelli NR. 2001. Positive torsional strain causes the formation of a four-way junction at replication forks. J. Biol. Chem. 276:2790- 966
-
(2001)
J. Biol. Chem
, vol.276
, pp. 2790-2966
-
-
Postow, L.1
Ullsperger, C.2
Keller, R.W.3
Bustamante, C.4
Vologodskii, A.V.5
Cozzarelli, N.R.6
-
90
-
-
33744476417
-
The maximum number of torque-generating units in the flagellar motor of Escherichia coli is at least 11
-
Reid SW, Leake MC, Chandler JH, Lo CJ, Armitage JP, Berry RM. 2006. The maximum number of torque-generating units in the flagellar motor of Escherichia coli is at least 11. Proc. Natl. Acad. Sci. USA 103:8066-711
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8066-8711
-
-
Reid, S.W.1
Leake, M.C.2
Chandler, J.H.3
Lo, C.J.4
Armitage, J.P.5
Berry, R.M.6
-
91
-
-
1842788676
-
Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation
-
Revyakin A, Ebright RH, Strick TR. 2004. Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation. Proc. Natl. Acad. Sci. USA 101:4776-800
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4776-4800
-
-
Revyakin, A.1
Ebright, R.H.2
Strick, T.R.3
-
92
-
-
80054711966
-
The torsional state of DNA within the chromosome
-
Roca J. 2011. The torsional state of DNA within the chromosome. Chromosoma 120:323-344
-
(2011)
Chromosoma
, vol.120
, pp. 323-344
-
-
Roca, J.1
-
93
-
-
1542366687
-
Rapid rotation of micron and submicron dielectric particles measured using optical tweezers
-
Rowe AD, Leake MC, Morgan H, Berry RM. 2003. Rapid rotation of micron and submicron dielectric particles measured using optical tweezers. J. Mod. Opt. 50:1539-544
-
(2003)
J. Mod. Opt
, vol.50
, pp. 1539-1544
-
-
Rowe, A.D.1
Leake, M.C.2
Morgan, H.3
Berry, R.M.4
-
94
-
-
0030740986
-
The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling
-
Rybenkov VV, Vologodskii AV, Cozzarelli NR. 1997. The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling. Nucleic Acids Res. 25:1412-188
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1412-1198
-
-
Rybenkov, V.V.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
95
-
-
33745762610
-
Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA
-
Salceda J, Ferńandez X, Roca J. 2006. Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA. EMBO J. 25:2575-833
-
(2006)
EMBO J.
, vol.25
, pp. 2575-2833
-
-
Salceda, J.1
Ferńandez, X.2
Roca, J.3
-
96
-
-
0035333546
-
Structural transitions in DNA driven by external force and torque
-
Sarkar A, Leger JF, Chatenay D, Marko JF. 2001. Structural transitions in DNA driven by external force and torque. Phys. Rev. E 63:100
-
(2001)
Phys. Rev
, vol.E 63
, pp. 100
-
-
Sarkar, A.1
Leger, J.F.2
Chatenay, D.3
Marko, J.F.4
-
97
-
-
80054774248
-
Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei
-
Scheffer MP, Eltsov M, Frangakis AS. 2011. Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei. Proc. Natl. Acad. Sci. USA 108:16992-977
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 16992-16987
-
-
Scheffer, M.P.1
Eltsov, M.2
Frangakis, A.S.3
-
98
-
-
80052387844
-
Underwound DNA under tension: Structure, elasticity, and sequence-dependent behaviors
-
SheininMY,Forth S, Marko JF,WangMD.2011. UnderwoundDNAunder tension: Structure, elasticity, and sequence-dependent behaviors. Phys. Rev. Lett. 107:55
-
(2011)
Phys. Rev. Lett
, vol.107
, pp. 55
-
-
Sheinin, M.Y.1
Forth, S.2
Marko, J.F.3
Wang, M.D.4
-
99
-
-
68849118253
-
Twist-stretch coupling and phase transition during DNA supercoiling
-
Sheinin MY,Wang MD. 2009. Twist-stretch coupling and phase transition during DNA supercoiling. Phys. Chem. Chem. Phys. 11:4800-33
-
(2009)
Phys. Chem. Chem. Phys
, vol.11
, pp. 4800-4833
-
-
Sheinin, M.Y.1
Wang, M.D.2
-
100
-
-
0022234831
-
Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: A model system for study of higher order structure
-
Simpson RT, Thoma F, Brubaker JM. 1985. Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: A model system for study of higher order structure. Cell 42:799-8088
-
(1985)
Cell
, vol.42
, pp. 799-8088
-
-
Simpson, R.T.1
Thoma, F.2
Brubaker, J.M.3
-
101
-
-
0035909370
-
The bacteriophage ∂ 299 portal motor can package DNA against a large internal force
-
Smith DE, Tans SJ, Smith SB, Grimes S, Anderson DL, Bustamante C. 2001. The bacteriophage ∂299 portal motor can package DNA against a large internal force. Nature 413:748-522
-
(2001)
Nature
, vol.413
, pp. 748-522
-
-
Smith, D.E.1
Tans, S.J.2
Smith, S.B.3
Grimes, S.4
Anderson, D.L.5
Bustamante, C.6
-
102
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith SB, Cui YJ, Bustamante C. 1996. Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules. Science 271:795-999
-
(1996)
Science
, vol.271
, pp. 795-999
-
-
Smith, S.B.1
Cui, Y.J.2
Bustamante, C.3
-
103
-
-
52649147435
-
Bacterial flagellar motor
-
Sowa Y, Berry RM. 2008. Bacterial flagellar motor. Q. Rev. Biophys. 41:103-322
-
(2008)
Q. Rev. Biophys
, vol.41
, pp. 103-322
-
-
Sowa, Y.1
Berry, R.M.2
-
104
-
-
0037432553
-
Torque-speed relationship of the Na+-driven flagellar motor of Vibrio alginolyticus
-
Sowa Y, Hotta H, Homma M, Ishijima A. 2003. Torque-speed relationship of the Na+-driven flagellar motor of Vibrio alginolyticus. J. Mol. Biol. 327:1043-511
-
(2003)
J. Mol. Biol
, vol.327
, pp. 1043-1511
-
-
Sowa, Y.1
Hotta, H.2
Homma, M.3
Ishijima, A.4
-
105
-
-
0029937922
-
The elasticity of a single supercoiled DNA molecule
-
1835377
-
Strick TR, Allemand JF, Bensimon D, Bensimon A, Croquette V. 1996. The elasticity of a single supercoiled DNA molecule. Science 271:1835-377
-
(1996)
Science
, vol.271
-
-
Strick, T.R.1
Allemand, J.F.2
Bensimon, D.3
Bensimon, A.4
Croquette, V.5
-
106
-
-
0033370005
-
Micro-mechanical measurement of the torsional modulus of DNA
-
Strick TR, Bensimon D, Croquette V. 1999. Micro-mechanical measurement of the torsional modulus of DNA. Genetica 106:57-622
-
(1999)
Genetica 106
, pp. 57-622
-
-
Strick, T.R.1
Bensimon, D.2
Croquette, V.3
-
107
-
-
0034690257
-
Single-molecule analysis of DNA uncoiling by a type II topoisomerase
-
Strick TR, Croquette V, Bensimon D. 2000. Single-molecule analysis of DNA uncoiling by a type II topoisomerase. Nature 404:901-44
-
(2000)
Nature
, vol.404
, pp. 901-944
-
-
Strick, T.R.1
Croquette, V.2
Bensimon, D.3
-
108
-
-
81055145461
-
Thermodynamic efficiency and mechanochemical coupling of F1-ATPase
-
Toyabe S, Watanabe-Nakayama T, OkamotoT,Kudo S, Muneyuki E. 2011. Thermodynamic efficiency and mechanochemical coupling of F1-ATPase. Proc. Natl. Acad. Sci. USA 108:17951-566
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 17951-17576
-
-
Toyabe, S.1
Watanabe-Nakayama, T.2
Okamoto, T.3
Kudo, S.4
Muneyuki, E.5
-
109
-
-
0024968110
-
Transcription-driven supercoiling ofDNA: Direct biochemical evidence from in vitro studies
-
Tsao YP,WuHY, LiuLF. 1989. Transcription-driven supercoiling ofDNA: Direct biochemical evidence from in vitro studies. Cell 56:111-188
-
(1989)
Cell
, vol.56
, pp. 111-188
-
-
Tsao, Y.P.1
Wu, H.Y.2
Liu, L.F.3
-
110
-
-
76049087668
-
Oscillations in supercoiling drive circadian gene expression in cyanobacteria
-
Vijayan V, Zuzow R, O'Shea EK. 2009. Oscillations in supercoiling drive circadian gene expression in cyanobacteria. Proc. Natl. Acad. Sci. USA 106:22564-688
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 22564-22688
-
-
Vijayan, V.1
Zuzow, R.2
O'Shea, E.K.3
-
112
-
-
0036333912
-
The Stokes efficiency for molecular motors and its applications
-
Wang H, Oster G. 2002. The Stokes efficiency for molecular motors and its applications. Europhys. Lett. 57:134-400
-
(2002)
Europhys. Lett
, vol.57
, pp. 134-400
-
-
Wang, H.1
Oster, G.2
-
113
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
Wang MD, Schnitzer MJ, Yin H, Landick R, Gelles J, Block SM. 1998. Force and velocity measured for single molecules of RNA polymerase. Science 282:902-77
-
(1998)
Science
, vol.282
, pp. 902-977
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
-
114
-
-
0031047888
-
Stretching DNA with optical tweezers
-
Wang MD, Yin H, Landick R, Gelles J, Block SM. 1997. Stretching DNA with optical tweezers. Biophys. J. 72:1335-466
-
(1997)
Biophys. J.
, vol.72
, pp. 1335-1466
-
-
Wang, M.D.1
Yin, H.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
115
-
-
84877776728
-
Dielectrophoretic measurement of bacterial motor characteristics
-
0228088
-
Washizu M, Kurahashi Y, Iochi H, Kurosawa O, Aizawa S, et al. 1993. Dielectrophoretic measurement of bacterial motor characteristics. Biomicrofluidics pii:0228088
-
(1993)
Biomicrofluidics Pii
-
-
Washizu, M.1
Kurahashi, Y.2
Iochi, H.3
Kurosawa, O.4
Aizawa, S.5
-
116
-
-
37549041710
-
Effect of external torque on the ATP-driven rotation of F1-ATPase
-
Watanabe-Nakayama T, Toyabe S, Kudo S, Sugiyama S, Yoshida M, Muneyuki E. 2008. Effect of external torque on the ATP-driven rotation of F1-ATPase. Biochem. Biophys. Res. Commun. 366:951-577
-
(2008)
Biochem. Biophys. Res. Commun
, vol.366
, pp. 951-577
-
-
Watanabe-Nakayama, T.1
Toyabe, S.2
Kudo, S.3
Sugiyama, S.4
Yoshida, M.5
Muneyuki, E.6
-
117
-
-
0038497542
-
Molecular structure of nucleic acids: A structure for deoxyribose nucleic acid
-
Watson JD, Crick FH. 1953. Molecular structure of nucleic acids: A structure for deoxyribose nucleic acid. Nature 171:737-388
-
(1953)
Nature
, vol.171
, pp. 737-388
-
-
Watson, J.D.1
Crick, F.H.2
-
118
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen J-D, Lancaster L, Hodges C, Zeri A-C, Yoshimura SH, et al. 2008. Following translation by single ribosomes one codon at a time. Nature 452:598-6033
-
(2008)
Nature
, vol.452
, pp. 598-6033
-
-
Wen, J.-D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.-C.4
Yoshimura, S.H.5
-
119
-
-
0034594940
-
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
-
Wuite GJL, Smith SB, Young M, Keller D, Bustamante C. 2000. Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature 404:103-66
-
(2000)
Nature
, vol.404
, pp. 103-166
-
-
Wuite, G.J.L.1
Smith, S.B.2
Young, M.3
Keller, D.4
Bustamante, C.5
-
120
-
-
0032568695
-
F1-ATPase is a highly efficient molecular motor that rotates with discrete 120 steps
-
Yasuda R, Noji H, Kinosita K Jr, YoshidaM. 1998. F1-ATPase is a highly efficient molecular motor that rotates with discrete 120 steps. Cell 93:1117-244
-
(1998)
Cell
, vol.93
, pp. 1117-1244
-
-
Yasuda, R.1
Noji, H.2
Kinosita Jr., K.3
Yoshida, M.4
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