-
1
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
Abbondanzieri E.A., Greenleaf W.J., Shaevitz J.W., Landick R., Block S.M. Direct observation of base-pair stepping by RNA polymerase. Nature 2005, 438:460-465.
-
(2005)
Nature
, vol.438
, pp. 460-465
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
2
-
-
0242610824
-
Optical application and measurement of torque on microparticles of isotropic nonabsorbing material
-
Bishop A.I., Nieminen T.A., Heckenberg N.R., Rubinsztein-Dunlop H. Optical application and measurement of torque on microparticles of isotropic nonabsorbing material. Phys. Rev. A 2003, 68:033802.
-
(2003)
Phys. Rev. A
, vol.68
, pp. 033802
-
-
Bishop, A.I.1
Nieminen, T.A.2
Heckenberg, N.R.3
Rubinsztein-Dunlop, H.4
-
3
-
-
85032426517
-
Relaxation dynamics of semiflexible polymers
-
Bohbot-Raviv Y., Zhao W.Z., Feingold M., Wiggins C.H., Granek R. Relaxation dynamics of semiflexible polymers. Phys. Rev. Lett. 2004, 92:098101.
-
(2004)
Phys. Rev. Lett.
, vol.92
, pp. 098101
-
-
Bohbot-Raviv, Y.1
Zhao, W.Z.2
Feingold, M.3
Wiggins, C.H.4
Granek, R.5
-
4
-
-
0018666498
-
Sign inversion mechanism for enzymatic supercoiling of DNA
-
Brown P.O., Cozzarelli N.R. Sign inversion mechanism for enzymatic supercoiling of DNA. Science 1979, 206:1081-1083.
-
(1979)
Science
, vol.206
, pp. 1081-1083
-
-
Brown, P.O.1
Cozzarelli, N.R.2
-
5
-
-
0000800913
-
Catenation and knotting of duplex DNA by type-1 topoisomerases - a mechanistic parallel with type-2 topoisomerases
-
Brown P.O., Cozzarelli N.R. Catenation and knotting of duplex DNA by type-1 topoisomerases - a mechanistic parallel with type-2 topoisomerases. Proc. Natl. Acad. Sci. USA 1981, 78:843-847.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 843-847
-
-
Brown, P.O.1
Cozzarelli, N.R.2
-
6
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant Z., Stone M.D., Gore J., Smith S.B., Cozzarelli N.R., Bustamante C. Structural transitions and elasticity from torque measurements on DNA. Nature 2003, 424:338-341.
-
(2003)
Nature
, vol.424
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
Smith, S.B.4
Cozzarelli, N.R.5
Bustamante, C.6
-
7
-
-
6444239874
-
High-precision measurements of light-induced torque on absorbing microspheres
-
Capitanio M., Normanno D., Pavone F.S. High-precision measurements of light-induced torque on absorbing microspheres. Opt. Lett. 2004, 29:2231-2233.
-
(2004)
Opt. Lett.
, vol.29
, pp. 2231-2233
-
-
Capitanio, M.1
Normanno, D.2
Pavone, F.S.3
-
8
-
-
0037948842
-
DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein
-
Carey J.F., Schultz S.J., Sisson L., Fazzio T.G., Champoux J.J. DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein. Proc. Natl. Acad. Sci. USA 2003, 100:5640-5645.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5640-5645
-
-
Carey, J.F.1
Schultz, S.J.2
Sisson, L.3
Fazzio, T.G.4
Champoux, J.J.5
-
9
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
Champoux J.J. DNA topoisomerases: Structure, function, and mechanism. Annu. Rev. Biochem. 2001, 70:369-413.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
10
-
-
20544452797
-
Tracking topoisomerase activity at the single-molecule level
-
Charvin G., Strick T.R., Bensimon D., Croquette V. Tracking topoisomerase activity at the single-molecule level. Annu. Rev. Biophys. Biomol. Struct. 2005, 34:201-219.
-
(2005)
Annu. Rev. Biophys. Biomol. Struct.
, vol.34
, pp. 201-219
-
-
Charvin, G.1
Strick, T.R.2
Bensimon, D.3
Croquette, V.4
-
11
-
-
8344238239
-
Recoiling DNA molecule: simulation and experiment
-
Coelho Neto J., Dickman R., Mesquita O.N. Recoiling DNA molecule: simulation and experiment. Physica A 2005, 345:173-184.
-
(2005)
Physica A
, vol.345
, pp. 173-184
-
-
Coelho Neto, J.1
Dickman, R.2
Mesquita, O.N.3
-
12
-
-
22544467771
-
The structural basis for substrate specificity in DNA topoisomerase IV
-
Corbett K.D., Schoeffler A.J., Thomsen N.D., Berger J.M. The structural basis for substrate specificity in DNA topoisomerase IV. J. Mol. Biol. 2005, 351:545-561.
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 545-561
-
-
Corbett, K.D.1
Schoeffler, A.J.2
Thomsen, N.D.3
Berger, J.M.4
-
13
-
-
34447136857
-
Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
-
Corbett K.D., Benedetti P., Berger J.M. Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI. Nat. Struct. Mol. Biol. 2007, 14:611-619.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 611-619
-
-
Corbett, K.D.1
Benedetti, P.2
Berger, J.M.3
-
14
-
-
0034669232
-
Preferential relaxation of positively supercoiled DNA by E-coli topoisomerase IV in single-molecule and ensemble measurements
-
Crisona N.J., Strick T.R., Bensimon D., Croquette V., Cozzarelli N.R. Preferential relaxation of positively supercoiled DNA by E-coli topoisomerase IV in single-molecule and ensemble measurements. Genes Dev. 2000, 14:2881-2892.
-
(2000)
Genes Dev.
, vol.14
, pp. 2881-2892
-
-
Crisona, N.J.1
Strick, T.R.2
Bensimon, D.3
Croquette, V.4
Cozzarelli, N.R.5
-
15
-
-
34547498794
-
Fast dynamics of supercoiled DNA revealed by single-molecule experiments
-
Crut A., Koster D.A., Seidel R., Wiggins C.H., Dekker N.H. Fast dynamics of supercoiled DNA revealed by single-molecule experiments. Proc. Natl. Acad. Sci. USA 2007, 104:11957-11962.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 11957-11962
-
-
Crut, A.1
Koster, D.A.2
Seidel, R.3
Wiggins, C.H.4
Dekker, N.H.5
-
16
-
-
33644821060
-
The structure of the transition state of the heterodimeric topoisomerase I of Leishmania donovani as a vanadate complex with nicked DNA
-
Davies D.R., Mushtaq A., Interthal H., Champoux J.J., Hol W.G.J. The structure of the transition state of the heterodimeric topoisomerase I of Leishmania donovani as a vanadate complex with nicked DNA. J. Mol. Biol. 2006, 357:1202-1210.
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 1202-1210
-
-
Davies, D.R.1
Mushtaq, A.2
Interthal, H.3
Champoux, J.J.4
Hol, W.G.J.5
-
17
-
-
0037126054
-
The mechanism of type IA topoisomerases
-
Dekker N.H., Rybenkov V.V., Duguet M., Crisona N.J., Cozzarelli N.R., Bensimon D., Croquette V. The mechanism of type IA topoisomerases. Proc. Natl. Acad. Sci. USA 2002, 99:12126-12131.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12126-12131
-
-
Dekker, N.H.1
Rybenkov, V.V.2
Duguet, M.3
Crisona, N.J.4
Cozzarelli, N.R.5
Bensimon, D.6
Croquette, V.7
-
18
-
-
0038061515
-
Thermophilic topoisomerase I on a single DNA molecule
-
Dekker N.H., Viard T., de La Tour C.B., Duguet M., Bensimon D., Croquette V. Thermophilic topoisomerase I on a single DNA molecule. J. Mol. Biol. 2003, 329:271-282.
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 271-282
-
-
Dekker, N.H.1
Viard, T.2
de La Tour, C.B.3
Duguet, M.4
Bensimon, D.5
Croquette, V.6
-
19
-
-
0025763074
-
Transcription-induced conformational change in a topologically closed DNA domain
-
Droge P., Nordheim A. Transcription-induced conformational change in a topologically closed DNA domain. Nucleic Acids Res. 1991, 19:2941-2946.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2941-2946
-
-
Droge, P.1
Nordheim, A.2
-
20
-
-
33645052194
-
Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology
-
Drolet M. Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology. Mol. Microbiol. 2006, 59:723-730.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 723-730
-
-
Drolet, M.1
-
21
-
-
0035283455
-
Single-molecule studies of DNA and DNA-protein interactions
-
Feingold M. Single-molecule studies of DNA and DNA-protein interactions. Physica E 2001, 9:616-620.
-
(2001)
Physica E
, vol.9
, pp. 616-620
-
-
Feingold, M.1
-
22
-
-
0021265468
-
DNA supercoiling and gene-expression
-
Fisher L.M. DNA supercoiling and gene-expression. Nature 1984, 307:686-687.
-
(1984)
Nature
, vol.307
, pp. 686-687
-
-
Fisher, L.M.1
-
23
-
-
0343006021
-
DNA supercoiling and unusual structures
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, N.R. Cozzarelli, J.C. Wang (Eds.)
-
Frank-Kamenetskii M.D. DNA supercoiling and unusual structures. DNA Topology and Its Biological Effects 1990, 185-215. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. N.R. Cozzarelli, J.C. Wang (Eds.).
-
(1990)
DNA Topology and Its Biological Effects
, pp. 185-215
-
-
Frank-Kamenetskii, M.D.1
-
24
-
-
0037335662
-
Phylogenomics of type II DNA topoisomerases
-
Gadelle D., Filee J., Buhler C., Forterre P. Phylogenomics of type II DNA topoisomerases. Bioessays 2003, 25:232-242.
-
(2003)
Bioessays
, vol.25
, pp. 232-242
-
-
Gadelle, D.1
Filee, J.2
Buhler, C.3
Forterre, P.4
-
25
-
-
0026452036
-
Positive supercoiling of DNA greatly diminishes messenger-RNA synthesis in yeast
-
Gartenberg M.R., Wang J.C. Positive supercoiling of DNA greatly diminishes messenger-RNA synthesis in yeast. Proc. Natl. Acad. Sci. USA 1992, 89:11461-11465.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 11461-11465
-
-
Gartenberg, M.R.1
Wang, J.C.2
-
26
-
-
0027424759
-
Identification of barriers to rotation of DNA segments in yeast from the topology of DNA rings excised by an inducible site-specific recombinase
-
Gartenberg M.R., Wang J.C. Identification of barriers to rotation of DNA segments in yeast from the topology of DNA rings excised by an inducible site-specific recombinase. Proc. Natl. Acad. Sci. USA 1993, 90:10514-10518.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 10514-10518
-
-
Gartenberg, M.R.1
Wang, J.C.2
-
27
-
-
0000576165
-
DNA gyrase - enzyme that introduces superhelical turns into DNA
-
Gellert M., Mizuuchi K., Odea M.H., Nash H.A. DNA gyrase - enzyme that introduces superhelical turns into DNA. Proc. Natl. Acad. Sci. USA 1976, 73:3872-3876.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 3872-3876
-
-
Gellert, M.1
Mizuuchi, K.2
Odea, M.H.3
Nash, H.A.4
-
28
-
-
0023790970
-
Supercoiling of intracellular DNA can occur in eukaryotic cells
-
Giaever G.N., Wang J.C. Supercoiling of intracellular DNA can occur in eukaryotic cells. Cell 1988, 55:849-856.
-
(1988)
Cell
, vol.55
, pp. 849-856
-
-
Giaever, G.N.1
Wang, J.C.2
-
29
-
-
30144434477
-
Mechanochemical analysis of DNA gyrase using rotor bead tracking
-
Gore J., Bryant Z., Stone M.D., Nollmann M.N., Cozzarelli N.R., Bustamante C. Mechanochemical analysis of DNA gyrase using rotor bead tracking. Nature 2006, 439:100-104.
-
(2006)
Nature
, vol.439
, pp. 100-104
-
-
Gore, J.1
Bryant, Z.2
Stone, M.D.3
Nollmann, M.N.4
Cozzarelli, N.R.5
Bustamante, C.6
-
30
-
-
27944442099
-
Relaxation dynamics of a single DNA molecule
-
Goshen E., Zhao W.Z., Carmon G., Rosen S., Granek R., Feingold M. Relaxation dynamics of a single DNA molecule. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 2005, 71:061920.
-
(2005)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
, vol.71
, pp. 061920
-
-
Goshen, E.1
Zhao, W.Z.2
Carmon, G.3
Rosen, S.4
Granek, R.5
Feingold, M.6
-
31
-
-
40049090181
-
Crystal structure of an intact type II DNA topoisomerase: Insights into DNA transfer mechanisms
-
Graille M., Cladiere L., Durand D., Lecointe F., Gadelle D., Quevillon-Cheruel S., Vachette P., Forterre P., van Tilbeurgh H. Crystal structure of an intact type II DNA topoisomerase: Insights into DNA transfer mechanisms. Structure 2008, 16:360-370.
-
(2008)
Structure
, vol.16
, pp. 360-370
-
-
Graille, M.1
Cladiere, L.2
Durand, D.3
Lecointe, F.4
Gadelle, D.5
Quevillon-Cheruel, S.6
Vachette, P.7
Forterre, P.8
van Tilbeurgh, H.9
-
32
-
-
0022340594
-
Camptothecin induces protein-linked DNA breaks via mammalian DNA topoisomerase-I
-
Hsiang Y.H., Hertzberg R., Hecht S., Liu L.F. Camptothecin induces protein-linked DNA breaks via mammalian DNA topoisomerase-I. J. Biol. Chem. 1985, 260:4873-4878.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 4873-4878
-
-
Hsiang, Y.H.1
Hertzberg, R.2
Hecht, S.3
Liu, L.F.4
-
33
-
-
0025027077
-
New topoisomerase essential for chromosome segregation in Escherichia coli
-
Kato J., Nishimura Y., Imamura R., Niki H., Hiraga S., Suzuki H. New topoisomerase essential for chromosome segregation in Escherichia coli. Cell 1990, 63:393-404.
-
(1990)
Cell
, vol.63
, pp. 393-404
-
-
Kato, J.1
Nishimura, Y.2
Imamura, R.3
Niki, H.4
Hiraga, S.5
Suzuki, H.6
-
34
-
-
0034662998
-
Analysis of topoisomerase function in bacterial replication fork movement: Use of DNA microarrays
-
Khodursky A.B., Peter B.J., Schmidt M.B., DeRisi J., Botstein D., Brown P.O., Cozzarelli N.R. Analysis of topoisomerase function in bacterial replication fork movement: Use of DNA microarrays. Proc. Natl. Acad. Sci. USA 2000, 97:9419-9424.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9419-9424
-
-
Khodursky, A.B.1
Peter, B.J.2
Schmidt, M.B.3
DeRisi, J.4
Botstein, D.5
Brown, P.O.6
Cozzarelli, N.R.7
-
35
-
-
0021930945
-
Bacterial-DNA topoisomerase-I can relax positively supercoiled DNA containing a single-stranded loop
-
Kirkegaard K., Wang J.C. Bacterial-DNA topoisomerase-I can relax positively supercoiled DNA containing a single-stranded loop. J. Mol. Biol. 1985, 185:625-637.
-
(1985)
J. Mol. Biol.
, vol.185
, pp. 625-637
-
-
Kirkegaard, K.1
Wang, J.C.2
-
36
-
-
15844383117
-
Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB
-
Koster D.A., Croquette V., Dekker C., Shuman S., Dekker N.H. Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. Nature 2005, 434:671-674.
-
(2005)
Nature
, vol.434
, pp. 671-674
-
-
Koster, D.A.1
Croquette, V.2
Dekker, C.3
Shuman, S.4
Dekker, N.H.5
-
37
-
-
34447509295
-
Antitumour drugs impede DNA uncoiling by topoisomerase I
-
Koster D.A., Palle K., Bot E.S.M., Bjornsti M.A., Dekker N.H. Antitumour drugs impede DNA uncoiling by topoisomerase I. Nature 2007, 448:213-217.
-
(2007)
Nature
, vol.448
, pp. 213-217
-
-
Koster, D.A.1
Palle, K.2
Bot, E.S.M.3
Bjornsti, M.A.4
Dekker, N.H.5
-
38
-
-
0033634688
-
Catalytic mechanism of DNA topoisomerase IB
-
Krogh B.O., Shuman S. Catalytic mechanism of DNA topoisomerase IB. Mol. Cell 2000, 5:1035-1041.
-
(2000)
Mol. Cell
, vol.5
, pp. 1035-1041
-
-
Krogh, B.O.1
Shuman, S.2
-
39
-
-
0037047088
-
Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins
-
Leng F.F., McMacken R. Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins. Proc. Natl. Acad. Sci. USA 2002, 99:9139-9144.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9139-9144
-
-
Leng, F.F.1
McMacken, R.2
-
41
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
Lewis M., Chang G., Horton N.C., Kercher M.A., Pace H.C., Schumacher M.A., Brennan R.G., Lu P.Z. Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Science 1996, 271:1247-1254.
-
(1996)
Science
, vol.271
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.Z.8
-
42
-
-
0028115776
-
3-dimensional structure of the 67k N-terminal fragment of Escherichia-coli DNA topoisomerase-I
-
Lima C.D., Wang J.C., Mondragon A. 3-dimensional structure of the 67k N-terminal fragment of Escherichia-coli DNA topoisomerase-I. Nature 1994, 367:138-146.
-
(1994)
Nature
, vol.367
, pp. 138-146
-
-
Lima, C.D.1
Wang, J.C.2
Mondragon, A.3
-
43
-
-
0023433855
-
Supercoiling of the DNA-template during transcription
-
Liu L.F., Wang J.C. Supercoiling of the DNA-template during transcription. Proc. Natl. Acad. Sci. USA 1987, 84:7024-7027.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
45
-
-
66349135629
-
Mechanisms of chiral discrimination by topoisomerase IV
-
Neuman K.C., Charvin G., Bensimon D., Croquette V. Mechanisms of chiral discrimination by topoisomerase IV. Proc. Natl. Acad. Sci. USA 2009, 106:6986-6991.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 6986-6991
-
-
Neuman, K.C.1
Charvin, G.2
Bensimon, D.3
Croquette, V.4
-
46
-
-
33746631341
-
Direct measurement of torque in an optical trap and its application to double-strand DNA
-
Oroszi L., Galajda P., Kirei H., Bottka S., Ormos P. Direct measurement of torque in an optical trap and its application to double-strand DNA. Phys. Rev. Lett. 2006, 97:058301.
-
(2006)
Phys. Rev. Lett.
, vol.97
, pp. 058301
-
-
Oroszi, L.1
Galajda, P.2
Kirei, H.3
Bottka, S.4
Ormos, P.5
-
47
-
-
19244372639
-
Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts
-
Pan C.Q., Finkel S.E., Cramton S.E., Feng J.A., Sigman D.S., Johnson R.C. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. J. Mol. Biol. 1996, 264:675-695.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 675-695
-
-
Pan, C.Q.1
Finkel, S.E.2
Cramton, S.E.3
Feng, J.A.4
Sigman, D.S.5
Johnson, R.C.6
-
48
-
-
0027171678
-
Decatenation activity of topoisomerase-Iv during oric and Pbr322 DNA-replication in-vitro
-
Peng H., Marians K.J. Decatenation activity of topoisomerase-Iv during oric and Pbr322 DNA-replication in-vitro. Proc. Natl. Acad. Sci. USA 1993, 90:8571-8575.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8571-8575
-
-
Peng, H.1
Marians, K.J.2
-
49
-
-
73449119919
-
Insights from the structure of a smallpox virus topoisomerase-DNA transition state mimic
-
Perry K., Hwang Y., Bushman F.D., Van Duyne G.D. Insights from the structure of a smallpox virus topoisomerase-DNA transition state mimic. Structure 2010, 18:127-137.
-
(2010)
Structure
, vol.18
, pp. 127-137
-
-
Perry, K.1
Hwang, Y.2
Bushman, F.D.3
Van Duyne, G.D.4
-
50
-
-
11344266685
-
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
-
Peter B.J., Arsuaga J., Breier A.M., Khodursky A.B., Brown P.O., Cozzarelli N.R. Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol. 2004, 5:R87.
-
(2004)
Genome Biol.
, vol.5
-
-
Peter, B.J.1
Arsuaga, J.2
Breier, A.M.3
Khodursky, A.B.4
Brown, P.O.5
Cozzarelli, N.R.6
-
51
-
-
0024469050
-
The basis for camptothecin enhancement of DNA breakage by eukaryotic topoisomerase-I
-
Porter S.E., Champoux J.J. The basis for camptothecin enhancement of DNA breakage by eukaryotic topoisomerase-I. Nucleic Acids Res. 1989, 17:8521-8532.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 8521-8532
-
-
Porter, S.E.1
Champoux, J.J.2
-
52
-
-
0032489634
-
Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA
-
Redinbo M.R., Stewart L., Kuhn P., Champoux J.J., Hol W.G.J. Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science 1998, 279:1504-1513.
-
(1998)
Science
, vol.279
, pp. 1504-1513
-
-
Redinbo, M.R.1
Stewart, L.2
Kuhn, P.3
Champoux, J.J.4
Hol, W.G.J.5
-
53
-
-
1842788676
-
Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation
-
Revyakin A., Ebright R.H., Strick T.R. Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation. Proc. Natl. Acad. Sci. USA 2004, 101:4776-4780.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4776-4780
-
-
Revyakin, A.1
Ebright, R.H.2
Strick, T.R.3
-
54
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: A protein-induced DNA u-turn
-
Rice P.A., Yang S.W., Mizuuchi K., Nash H.A. Crystal structure of an IHF-DNA complex: A protein-induced DNA u-turn. Cell 1996, 87:1295-1306.
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.W.2
Mizuuchi, K.3
Nash, H.A.4
-
55
-
-
0037438725
-
Force and torque measurements using magnetic micro beads for single molecule biophysics
-
Romano G., Sacconi L., Capitanio M., Pavone F.S. Force and torque measurements using magnetic micro beads for single molecule biophysics. Opt. Commun. 2003, 215:323-331.
-
(2003)
Opt. Commun.
, vol.215
, pp. 323-331
-
-
Romano, G.1
Sacconi, L.2
Capitanio, M.3
Pavone, F.S.4
-
56
-
-
0000559443
-
Three-dimensional magneto-optic trap for micro-object manipulation
-
Sacconi L., Romano G., Ballerini R., Capitanio M., De Pas M., Giuntini M., Dunlap D., Finzi L., Pavone F.S. Three-dimensional magneto-optic trap for micro-object manipulation. Opt. Lett. 2001, 26:1359-1361.
-
(2001)
Opt. Lett.
, vol.26
, pp. 1359-1361
-
-
Sacconi, L.1
Romano, G.2
Ballerini, R.3
Capitanio, M.4
De Pas, M.5
Giuntini, M.6
Dunlap, D.7
Finzi, L.8
Pavone, F.S.9
-
57
-
-
20444500568
-
Analysis of DNA supercoil induction by FtsK indicates translocation without groove-tracking
-
Saleh O.A., Bigot S., Barre F.X., Allemand J.F. Analysis of DNA supercoil induction by FtsK indicates translocation without groove-tracking. Nat. Struct. Mol. Biol. 2005, 12:436-440.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 436-440
-
-
Saleh, O.A.1
Bigot, S.2
Barre, F.X.3
Allemand, J.F.4
-
58
-
-
50649101663
-
DNA topoisomerases: harnessing and constraining energy to govern chromosome topology
-
Schoeffler A.J., Berger J.M. DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q. Rev. Biophys. 2008, 41:41-101.
-
(2008)
Q. Rev. Biophys.
, vol.41
, pp. 41-101
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
59
-
-
4344649856
-
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I
-
Seidel R., van Noort J., van der Scheer C., Bloom J.G.P., Dekker N.H., Dutta C.F., Blundell A., Robinson T., Firman K., Dekker C. Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I. Nat. Struct. Mol. Biol. 2004, 11:838-843.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 838-843
-
-
Seidel, R.1
van Noort, J.2
van der Scheer, C.3
Bloom, J.G.P.4
Dekker, N.H.5
Dutta, C.F.6
Blundell, A.7
Robinson, T.8
Firman, K.9
Dekker, C.10
-
60
-
-
0028130224
-
Vaccinia topoisomerase binds circumferentially to DNA
-
Sekiguchi J., Shuman S. Vaccinia topoisomerase binds circumferentially to DNA. J. Biol. Chem. 1994, 269:31731-31734.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31731-31734
-
-
Sekiguchi, J.1
Shuman, S.2
-
62
-
-
0037180432
-
The mechanism of topoisomerase I poisoning by a camptothecin analog
-
Staker B.L., Hjerrild K., Feese M.D., Behnke C.A., Burgin A.B., Stewart L. The mechanism of topoisomerase I poisoning by a camptothecin analog. Proc. Natl. Acad. Sci. USA 2002, 99:15387-15392.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15387-15392
-
-
Staker, B.L.1
Hjerrild, K.2
Feese, M.D.3
Behnke, C.A.4
Burgin, A.B.5
Stewart, L.6
-
63
-
-
0032489675
-
A model for the mechanism of human topoisomerase I
-
Stewart L., Redinbo M.R., Qiu X.Y., Hol W.G.J., Champoux J.J. A model for the mechanism of human topoisomerase I. Science 1998, 279:1534-1541.
-
(1998)
Science
, vol.279
, pp. 1534-1541
-
-
Stewart, L.1
Redinbo, M.R.2
Qiu, X.Y.3
Hol, W.G.J.4
Champoux, J.J.5
-
64
-
-
0031006668
-
Vaccinia DNA topoisomerase I: Evidence supporting a free rotation mechanism for DNA supercoil relaxation
-
Stivers J.T., Harris T.K., Mildvan A.S. Vaccinia DNA topoisomerase I: Evidence supporting a free rotation mechanism for DNA supercoil relaxation. Biochemistry 1997, 36:5212-5222.
-
(1997)
Biochemistry
, vol.36
, pp. 5212-5222
-
-
Stivers, J.T.1
Harris, T.K.2
Mildvan, A.S.3
-
65
-
-
0041306000
-
Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases
-
Stone M.D., Bryant Z., Crisona N.J., Smith S.B., Vologodskii A., Bustamante C., Cozzarelli N.R. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases. Proc. Natl. Acad. Sci. USA 2003, 100:8654-8659.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8654-8659
-
-
Stone, M.D.1
Bryant, Z.2
Crisona, N.J.3
Smith, S.B.4
Vologodskii, A.5
Bustamante, C.6
Cozzarelli, N.R.7
-
66
-
-
0029937922
-
The elasticity of a single supercoiled DNA molecule
-
Strick T.R., Allemand J.F., Bensimon D., Bensimon A., Croquette V. The elasticity of a single supercoiled DNA molecule. Science 1996, 271:1835-1837.
-
(1996)
Science
, vol.271
, pp. 1835-1837
-
-
Strick, T.R.1
Allemand, J.F.2
Bensimon, D.3
Bensimon, A.4
Croquette, V.5
-
67
-
-
0034690257
-
Single-molecule analysis of DNA uncoiling by a type II topoisomerase
-
Strick T.R., Croquette V., Bensimon D. Single-molecule analysis of DNA uncoiling by a type II topoisomerase. Nature 2000, 404:901-904.
-
(2000)
Nature
, vol.404
, pp. 901-904
-
-
Strick, T.R.1
Croquette, V.2
Bensimon, D.3
-
68
-
-
2942556663
-
DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: Effects of DNA bends
-
Stupina V.A., Wang J.C. DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: Effects of DNA bends. Proc. Natl. Acad. Sci. USA 2004, 101:8608-8613.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8608-8613
-
-
Stupina, V.A.1
Wang, J.C.2
-
69
-
-
0041312645
-
Flexible DNA bending in HU-DNA cocrystal structures
-
Swinger K.K., Lemberg K.M., Zhang Y., Rice P.A. Flexible DNA bending in HU-DNA cocrystal structures. EMBO J. 2003, 22:3749-3760.
-
(2003)
EMBO J.
, vol.22
, pp. 3749-3760
-
-
Swinger, K.K.1
Lemberg, K.M.2
Zhang, Y.3
Rice, P.A.4
-
70
-
-
35548950309
-
Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism
-
Taneja B., Schnurr B., Slesarev A., Marko J.F., Mondragon A. Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism. Proc. Natl. Acad. Sci. USA 2007, 104:14670-14675.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 14670-14675
-
-
Taneja, B.1
Schnurr, B.2
Slesarev, A.3
Marko, J.F.4
Mondragon, A.5
-
71
-
-
19044400932
-
Rotational drag on DNA: A single molecule experiment
-
Thomen P., Bockelmann U., Heslot F. Rotational drag on DNA: A single molecule experiment. Phys. Rev. Lett. 2002, 88:248102.
-
(2002)
Phys. Rev. Lett.
, vol.88
, pp. 248102
-
-
Thomen, P.1
Bockelmann, U.2
Heslot, F.3
-
72
-
-
1642493666
-
Remote phosphate contacts trigger assembly of the active site of DNA topoisomerase IB
-
Tian L.G., Claeboe C.D., Hecht S.M., Shuman S. Remote phosphate contacts trigger assembly of the active site of DNA topoisomerase IB. Structure 2004, 12:31-40.
-
(2004)
Structure
, vol.12
, pp. 31-40
-
-
Tian, L.G.1
Claeboe, C.D.2
Hecht, S.M.3
Shuman, S.4
-
73
-
-
17044399694
-
Mechanistic plasticity of DNA topolsomerase IB: Phosphate electrostatics dictate the need for a catalytic arginine
-
Tian L.G., Claeboe C.D., Hecht S.M., Shuman S. Mechanistic plasticity of DNA topolsomerase IB: Phosphate electrostatics dictate the need for a catalytic arginine. Structure 2005, 13:513-520.
-
(2005)
Structure
, vol.13
, pp. 513-520
-
-
Tian, L.G.1
Claeboe, C.D.2
Hecht, S.M.3
Shuman, S.4
-
74
-
-
13444288385
-
DNA supercoiling - A global transcriptional regulator for enterobacterial growth?
-
Travers A., Muskhelishvili G. DNA supercoiling - A global transcriptional regulator for enterobacterial growth?. Nat. Rev. Microbiol. 2005, 3:157-169.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 157-169
-
-
Travers, A.1
Muskhelishvili, G.2
-
75
-
-
0024968110
-
Transcription-driven supercoiling of DNA-Direct biochemical-evidence from in vitro studies
-
Tsao Y.P., Wu H.Y., Liu L.F. Transcription-driven supercoiling of DNA-Direct biochemical-evidence from in vitro studies. Cell 1989, 56:111-118.
-
(1989)
Cell
, vol.56
, pp. 111-118
-
-
Tsao, Y.P.1
Wu, H.Y.2
Liu, L.F.3
-
76
-
-
0030058275
-
Effect of supercoiling on the juxtaposition and relative orientation of DNA sites
-
Vologodskii A., Cozzarelli N.R. Effect of supercoiling on the juxtaposition and relative orientation of DNA sites. Biophys. J. 1996, 70:2548-2556.
-
(1996)
Biophys. J.
, vol.70
, pp. 2548-2556
-
-
Vologodskii, A.1
Cozzarelli, N.R.2
-
77
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
Wang J.C. Cellular roles of DNA topoisomerases: A molecular perspective. Nat. Rev. Mol. Cell Biol. 2002, 3:430-440.
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 430-440
-
-
Wang, J.C.1
-
78
-
-
0344702740
-
Locking the DNA topoisomerase I protein clamp inhibits DNA rotation and induces cell lethality
-
Woo M.H., Losasso C., Guo H., Pattarello L., Benedetti P., Bjornsti M.A. Locking the DNA topoisomerase I protein clamp inhibits DNA rotation and induces cell lethality. Proc. Natl. Acad. Sci. USA 2003, 100:13767-13772.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13767-13772
-
-
Woo, M.H.1
Losasso, C.2
Guo, H.3
Pattarello, L.4
Benedetti, P.5
Bjornsti, M.A.6
-
80
-
-
0024279845
-
Transcription generates positively and negatively supercoiled domains in the template
-
Wu H.Y., Shyy S., Wang J.C., Liu L.F. Transcription generates positively and negatively supercoiled domains in the template. Cell 1988, 53:433-440.
-
(1988)
Cell
, vol.53
, pp. 433-440
-
-
Wu, H.Y.1
Shyy, S.2
Wang, J.C.3
Liu, L.F.4
-
81
-
-
48249095613
-
Single-molecule approach to molecular biology in living bacterial cells
-
Xie X.S., Choi P.J., Li G.W., Lee N.K., Lia G. Single-molecule approach to molecular biology in living bacterial cells. Annu. Rev. Biophys. 2008, 37:417-444.
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 417-444
-
-
Xie, X.S.1
Choi, P.J.2
Li, G.W.3
Lee, N.K.4
Lia, G.5
-
82
-
-
0028858007
-
Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
-
Zechiedrich E.L., Cozzarelli N.R. Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes Dev. 1995, 9:2859-2869.
-
(1995)
Genes Dev.
, vol.9
, pp. 2859-2869
-
-
Zechiedrich, E.L.1
Cozzarelli, N.R.2
|